Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5734

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5733 and Pf6N2E2_5734 are separated by 164 nucleotidesPf6N2E2_5734 and Pf6N2E2_5735 are separated by 181 nucleotides Pf6N2E2_5733 - NLP/P60 family protein, at 6,550,406 to 6,550,957 _5733 Pf6N2E2_5734 - NLP/P60 family protein, at 6,551,122 to 6,551,655 _5734 Pf6N2E2_5735 - L-sorbosone dehydrogenase, at 6,551,837 to 6,553,147 _5735 Position (kb) 6551 6552Strain fitness (log2 ratio) -3 -2 -1 0 1at 6550.185 kb on - strandat 6550.220 kb on + strandat 6550.220 kb on + strandat 6550.226 kb on + strandat 6550.226 kb on + strandat 6550.226 kb on + strandat 6550.226 kb on + strandat 6550.227 kb on - strandat 6550.227 kb on - strandat 6550.282 kb on + strandat 6550.282 kb on + strandat 6550.282 kb on + strandat 6550.282 kb on + strandat 6550.283 kb on - strandat 6550.292 kb on - strandat 6550.306 kb on + strandat 6550.306 kb on + strandat 6550.306 kb on + strandat 6550.307 kb on - strandat 6550.309 kb on + strandat 6550.335 kb on + strandat 6550.336 kb on - strandat 6550.529 kb on + strand, within Pf6N2E2_5733at 6550.529 kb on + strand, within Pf6N2E2_5733at 6550.529 kb on + strand, within Pf6N2E2_5733at 6550.805 kb on + strand, within Pf6N2E2_5733at 6550.805 kb on + strand, within Pf6N2E2_5733at 6550.805 kb on + strand, within Pf6N2E2_5733at 6550.805 kb on + strand, within Pf6N2E2_5733at 6550.883 kb on + strand, within Pf6N2E2_5733at 6550.883 kb on + strand, within Pf6N2E2_5733at 6550.955 kb on + strandat 6550.955 kb on + strandat 6550.956 kb on - strandat 6551.121 kb on + strandat 6551.121 kb on + strandat 6551.121 kb on + strandat 6551.121 kb on + strandat 6551.121 kb on + strandat 6551.121 kb on + strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.317 kb on - strand, within Pf6N2E2_5734at 6551.317 kb on - strand, within Pf6N2E2_5734at 6551.317 kb on - strand, within Pf6N2E2_5734at 6551.317 kb on - strand, within Pf6N2E2_5734at 6551.356 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.602 kb on + strandat 6551.602 kb on + strandat 6551.602 kb on + strandat 6551.603 kb on - strandat 6551.676 kb on + strandat 6551.676 kb on + strandat 6551.676 kb on + strandat 6551.838 kb on + strandat 6551.838 kb on + strandat 6551.838 kb on + strandat 6552.008 kb on + strand, within Pf6N2E2_5735at 6552.009 kb on - strand, within Pf6N2E2_5735at 6552.024 kb on + strand, within Pf6N2E2_5735at 6552.024 kb on + strand, within Pf6N2E2_5735at 6552.025 kb on - strand, within Pf6N2E2_5735at 6552.025 kb on - strand, within Pf6N2E2_5735at 6552.040 kb on + strand, within Pf6N2E2_5735at 6552.153 kb on + strand, within Pf6N2E2_5735at 6552.154 kb on - strand, within Pf6N2E2_5735at 6552.154 kb on - strand, within Pf6N2E2_5735at 6552.154 kb on - strand, within Pf6N2E2_5735at 6552.225 kb on + strand, within Pf6N2E2_5735at 6552.228 kb on + strand, within Pf6N2E2_5735at 6552.228 kb on + strand, within Pf6N2E2_5735at 6552.228 kb on + strand, within Pf6N2E2_5735at 6552.228 kb on + strand, within Pf6N2E2_5735at 6552.228 kb on + strand, within Pf6N2E2_5735at 6552.228 kb on + strand, within Pf6N2E2_5735at 6552.228 kb on + strand, within Pf6N2E2_5735at 6552.228 kb on + strand, within Pf6N2E2_5735at 6552.228 kb on + strand, within Pf6N2E2_5735at 6552.229 kb on - strand, within Pf6N2E2_5735at 6552.229 kb on - strand, within Pf6N2E2_5735at 6552.229 kb on - strand, within Pf6N2E2_5735at 6552.229 kb on - strand, within Pf6N2E2_5735at 6552.229 kb on - strand, within Pf6N2E2_5735at 6552.229 kb on - strand, within Pf6N2E2_5735at 6552.229 kb on - strand, within Pf6N2E2_5735at 6552.229 kb on - strand, within Pf6N2E2_5735at 6552.229 kb on - strand, within Pf6N2E2_5735at 6552.229 kb on - strand, within Pf6N2E2_5735at 6552.229 kb on - strand, within Pf6N2E2_5735at 6552.246 kb on + strand, within Pf6N2E2_5735at 6552.246 kb on + strand, within Pf6N2E2_5735at 6552.246 kb on + strand, within Pf6N2E2_5735at 6552.247 kb on - strand, within Pf6N2E2_5735at 6552.247 kb on - strand, within Pf6N2E2_5735at 6552.247 kb on - strand, within Pf6N2E2_5735at 6552.276 kb on + strand, within Pf6N2E2_5735at 6552.276 kb on + strand, within Pf6N2E2_5735at 6552.277 kb on - strand, within Pf6N2E2_5735at 6552.277 kb on - strand, within Pf6N2E2_5735at 6552.389 kb on + strand, within Pf6N2E2_5735at 6552.389 kb on + strand, within Pf6N2E2_5735at 6552.390 kb on - strand, within Pf6N2E2_5735at 6552.390 kb on - strand, within Pf6N2E2_5735at 6552.495 kb on + strand, within Pf6N2E2_5735at 6552.495 kb on + strand, within Pf6N2E2_5735at 6552.495 kb on + strand, within Pf6N2E2_5735at 6552.495 kb on + strand, within Pf6N2E2_5735at 6552.495 kb on + strand, within Pf6N2E2_5735at 6552.495 kb on + strand, within Pf6N2E2_5735at 6552.495 kb on + strand, within Pf6N2E2_5735at 6552.496 kb on - strand, within Pf6N2E2_5735at 6552.496 kb on - strand, within Pf6N2E2_5735at 6552.615 kb on + strand, within Pf6N2E2_5735at 6552.615 kb on + strand, within Pf6N2E2_5735at 6552.616 kb on - strand, within Pf6N2E2_5735at 6552.616 kb on - strand, within Pf6N2E2_5735at 6552.616 kb on - strand, within Pf6N2E2_5735at 6552.616 kb on - strand, within Pf6N2E2_5735at 6552.651 kb on + strand, within Pf6N2E2_5735at 6552.651 kb on + strand, within Pf6N2E2_5735at 6552.652 kb on - strand, within Pf6N2E2_5735at 6552.652 kb on - strand, within Pf6N2E2_5735at 6552.652 kb on - strand, within Pf6N2E2_5735at 6552.652 kb on - strand, within Pf6N2E2_5735at 6552.652 kb on - strand, within Pf6N2E2_5735at 6552.652 kb on - strand, within Pf6N2E2_5735

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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6,550,185 - -2.3
6,550,220 + -0.1
6,550,220 + +1.0
6,550,226 + -0.2
6,550,226 + -0.6
6,550,226 + -1.9
6,550,226 + -0.2
6,550,227 - -0.5
6,550,227 - +1.4
6,550,282 + +0.7
6,550,282 + +0.3
6,550,282 + +0.5
6,550,282 + -1.0
6,550,283 - -1.6
6,550,292 - -0.8
6,550,306 + +0.6
6,550,306 + -2.5
6,550,306 + -0.6
6,550,307 - -1.5
6,550,309 + -0.8
6,550,335 + -1.0
6,550,336 - -1.0
6,550,529 + Pf6N2E2_5733 0.22 -1.6
6,550,529 + Pf6N2E2_5733 0.22 -1.3
6,550,529 + Pf6N2E2_5733 0.22 -0.6
6,550,805 + Pf6N2E2_5733 0.72 -2.2
6,550,805 + Pf6N2E2_5733 0.72 +0.7
6,550,805 + Pf6N2E2_5733 0.72 -1.6
6,550,805 + Pf6N2E2_5733 0.72 -0.6
6,550,883 + Pf6N2E2_5733 0.86 -2.3
6,550,883 + Pf6N2E2_5733 0.86 -1.9
6,550,955 + +0.3
6,550,955 + +1.2
6,550,956 - -0.2
6,551,121 + -0.6
6,551,121 + -0.8
6,551,121 + -0.5
6,551,121 + +1.6
6,551,121 + +1.1
6,551,121 + -1.9
6,551,122 - -0.7
6,551,122 - -1.9
6,551,122 - -0.7
6,551,122 - -1.4
6,551,122 - -1.3
6,551,122 - -1.0
6,551,122 - -1.5
6,551,122 - -0.8
6,551,122 - -1.3
6,551,122 - -1.6
6,551,122 - -1.1
6,551,122 - -1.2
6,551,122 - -2.0
6,551,317 - Pf6N2E2_5734 0.37 +0.3
6,551,317 - Pf6N2E2_5734 0.37 +0.2
6,551,317 - Pf6N2E2_5734 0.37 -2.0
6,551,317 - Pf6N2E2_5734 0.37 -0.6
6,551,356 + Pf6N2E2_5734 0.44 -1.2
6,551,512 + Pf6N2E2_5734 0.73 -1.2
6,551,512 + Pf6N2E2_5734 0.73 +0.0
6,551,512 + Pf6N2E2_5734 0.73 -1.4
6,551,512 + Pf6N2E2_5734 0.73 -1.5
6,551,512 + Pf6N2E2_5734 0.73 -0.9
6,551,512 + Pf6N2E2_5734 0.73 -2.4
6,551,512 + Pf6N2E2_5734 0.73 -0.3
6,551,512 + Pf6N2E2_5734 0.73 -0.3
6,551,512 + Pf6N2E2_5734 0.73 -0.2
6,551,513 - Pf6N2E2_5734 0.73 -0.2
6,551,513 - Pf6N2E2_5734 0.73 -1.3
6,551,513 - Pf6N2E2_5734 0.73 -0.7
6,551,513 - Pf6N2E2_5734 0.73 -0.0
6,551,513 - Pf6N2E2_5734 0.73 -0.2
6,551,513 - Pf6N2E2_5734 0.73 -0.2
6,551,513 - Pf6N2E2_5734 0.73 -1.5
6,551,513 - Pf6N2E2_5734 0.73 -1.2
6,551,513 - Pf6N2E2_5734 0.73 -1.6
6,551,513 - Pf6N2E2_5734 0.73 -1.8
6,551,513 - Pf6N2E2_5734 0.73 +0.7
6,551,513 - Pf6N2E2_5734 0.73 -2.3
6,551,602 + -1.4
6,551,602 + -1.9
6,551,602 + -0.0
6,551,603 - +0.5
6,551,676 + -0.0
6,551,676 + -0.9
6,551,676 + -0.3
6,551,838 + -1.8
6,551,838 + -1.8
6,551,838 + -1.5
6,552,008 + Pf6N2E2_5735 0.13 +0.2
6,552,009 - Pf6N2E2_5735 0.13 -0.1
6,552,024 + Pf6N2E2_5735 0.14 -0.7
6,552,024 + Pf6N2E2_5735 0.14 +0.1
6,552,025 - Pf6N2E2_5735 0.14 -0.0
6,552,025 - Pf6N2E2_5735 0.14 +0.8
6,552,040 + Pf6N2E2_5735 0.15 -0.8
6,552,153 + Pf6N2E2_5735 0.24 +0.8
6,552,154 - Pf6N2E2_5735 0.24 -0.8
6,552,154 - Pf6N2E2_5735 0.24 +0.1
6,552,154 - Pf6N2E2_5735 0.24 +0.6
6,552,225 + Pf6N2E2_5735 0.30 -0.2
6,552,228 + Pf6N2E2_5735 0.30 -0.2
6,552,228 + Pf6N2E2_5735 0.30 -1.0
6,552,228 + Pf6N2E2_5735 0.30 +1.1
6,552,228 + Pf6N2E2_5735 0.30 +0.2
6,552,228 + Pf6N2E2_5735 0.30 -0.9
6,552,228 + Pf6N2E2_5735 0.30 -0.6
6,552,228 + Pf6N2E2_5735 0.30 -0.1
6,552,228 + Pf6N2E2_5735 0.30 -1.1
6,552,228 + Pf6N2E2_5735 0.30 -1.3
6,552,229 - Pf6N2E2_5735 0.30 -1.7
6,552,229 - Pf6N2E2_5735 0.30 +1.1
6,552,229 - Pf6N2E2_5735 0.30 +0.6
6,552,229 - Pf6N2E2_5735 0.30 +0.3
6,552,229 - Pf6N2E2_5735 0.30 -0.2
6,552,229 - Pf6N2E2_5735 0.30 -0.4
6,552,229 - Pf6N2E2_5735 0.30 +0.3
6,552,229 - Pf6N2E2_5735 0.30 -0.0
6,552,229 - Pf6N2E2_5735 0.30 -0.6
6,552,229 - Pf6N2E2_5735 0.30 -0.7
6,552,229 - Pf6N2E2_5735 0.30 +0.5
6,552,246 + Pf6N2E2_5735 0.31 -0.0
6,552,246 + Pf6N2E2_5735 0.31 +0.1
6,552,246 + Pf6N2E2_5735 0.31 -0.3
6,552,247 - Pf6N2E2_5735 0.31 -1.5
6,552,247 - Pf6N2E2_5735 0.31 -0.9
6,552,247 - Pf6N2E2_5735 0.31 +0.2
6,552,276 + Pf6N2E2_5735 0.33 -1.8
6,552,276 + Pf6N2E2_5735 0.33 +0.0
6,552,277 - Pf6N2E2_5735 0.34 +0.8
6,552,277 - Pf6N2E2_5735 0.34 +0.8
6,552,389 + Pf6N2E2_5735 0.42 -2.9
6,552,389 + Pf6N2E2_5735 0.42 -0.8
6,552,390 - Pf6N2E2_5735 0.42 -1.2
6,552,390 - Pf6N2E2_5735 0.42 -0.6
6,552,495 + Pf6N2E2_5735 0.50 -0.7
6,552,495 + Pf6N2E2_5735 0.50 +0.3
6,552,495 + Pf6N2E2_5735 0.50 -0.2
6,552,495 + Pf6N2E2_5735 0.50 -0.3
6,552,495 + Pf6N2E2_5735 0.50 -1.6
6,552,495 + Pf6N2E2_5735 0.50 +0.0
6,552,495 + Pf6N2E2_5735 0.50 -0.0
6,552,496 - Pf6N2E2_5735 0.50 -1.6
6,552,496 - Pf6N2E2_5735 0.50 +0.8
6,552,615 + Pf6N2E2_5735 0.59 -1.2
6,552,615 + Pf6N2E2_5735 0.59 +0.5
6,552,616 - Pf6N2E2_5735 0.59 +0.3
6,552,616 - Pf6N2E2_5735 0.59 +0.3
6,552,616 - Pf6N2E2_5735 0.59 +0.4
6,552,616 - Pf6N2E2_5735 0.59 +1.0
6,552,651 + Pf6N2E2_5735 0.62 -0.2
6,552,651 + Pf6N2E2_5735 0.62 -0.4
6,552,652 - Pf6N2E2_5735 0.62 +0.1
6,552,652 - Pf6N2E2_5735 0.62 -1.1
6,552,652 - Pf6N2E2_5735 0.62 -2.7
6,552,652 - Pf6N2E2_5735 0.62 -0.9
6,552,652 - Pf6N2E2_5735 0.62 +0.3
6,552,652 - Pf6N2E2_5735 0.62 -1.4

Or see this region's nucleotide sequence