Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5664

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5662 and Pf6N2E2_5663 are separated by 56 nucleotidesPf6N2E2_5663 and Pf6N2E2_5664 are separated by 113 nucleotidesPf6N2E2_5664 and Pf6N2E2_5665 are separated by 410 nucleotides Pf6N2E2_5662 - L-Arginine ABC transporter, permease protein AotM (from data), at 6,474,158 to 6,474,856 _5662 Pf6N2E2_5663 - L-Arginine ABC transporter, ATPase component (from data), at 6,474,913 to 6,475,677 _5663 Pf6N2E2_5664 - Arginine pathway regulatory protein ArgR, repressor of arg regulon, at 6,475,791 to 6,476,771 _5664 Pf6N2E2_5665 - Succinylornithine transaminase (EC 2.6.1.81), at 6,477,182 to 6,478,402 _5665 Position (kb) 6475 6476 6477Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6474.834 kb on - strandat 6474.916 kb on + strandat 6474.916 kb on + strandat 6474.916 kb on + strandat 6474.916 kb on + strandat 6474.916 kb on + strandat 6474.916 kb on + strandat 6474.917 kb on - strandat 6474.917 kb on - strandat 6474.943 kb on - strandat 6474.943 kb on - strandat 6474.949 kb on + strandat 6475.041 kb on + strand, within Pf6N2E2_5663at 6475.042 kb on - strand, within Pf6N2E2_5663at 6475.042 kb on - strand, within Pf6N2E2_5663at 6475.309 kb on + strand, within Pf6N2E2_5663at 6475.309 kb on + strand, within Pf6N2E2_5663at 6475.310 kb on - strand, within Pf6N2E2_5663at 6475.467 kb on - strand, within Pf6N2E2_5663at 6475.467 kb on - strand, within Pf6N2E2_5663at 6475.587 kb on + strand, within Pf6N2E2_5663at 6475.676 kb on - strandat 6475.676 kb on - strandat 6475.734 kb on + strandat 6475.735 kb on - strandat 6475.735 kb on - strandat 6475.762 kb on - strandat 6475.762 kb on - strandat 6475.808 kb on - strandat 6475.833 kb on - strandat 6475.902 kb on + strand, within Pf6N2E2_5664at 6475.903 kb on - strand, within Pf6N2E2_5664at 6475.903 kb on - strand, within Pf6N2E2_5664at 6476.210 kb on + strand, within Pf6N2E2_5664at 6476.497 kb on + strand, within Pf6N2E2_5664at 6476.498 kb on - strand, within Pf6N2E2_5664at 6476.532 kb on + strand, within Pf6N2E2_5664at 6476.533 kb on - strand, within Pf6N2E2_5664at 6476.533 kb on - strand, within Pf6N2E2_5664at 6476.533 kb on - strand, within Pf6N2E2_5664at 6476.556 kb on + strand, within Pf6N2E2_5664at 6476.556 kb on + strand, within Pf6N2E2_5664at 6476.556 kb on + strand, within Pf6N2E2_5664at 6476.557 kb on - strand, within Pf6N2E2_5664at 6476.557 kb on - strand, within Pf6N2E2_5664at 6476.559 kb on + strand, within Pf6N2E2_5664at 6476.560 kb on - strand, within Pf6N2E2_5664at 6476.560 kb on - strand, within Pf6N2E2_5664at 6476.802 kb on + strandat 6476.802 kb on + strandat 6476.803 kb on - strandat 6476.976 kb on + strandat 6476.976 kb on + strandat 6476.976 kb on + strandat 6476.976 kb on + strandat 6476.976 kb on + strandat 6476.976 kb on + strandat 6476.976 kb on + strandat 6476.977 kb on - strandat 6476.977 kb on - strandat 6477.034 kb on - strandat 6477.051 kb on - strandat 6477.081 kb on - strandat 6477.081 kb on - strandat 6477.081 kb on - strandat 6477.125 kb on + strandat 6477.125 kb on + strandat 6477.126 kb on - strandat 6477.126 kb on - strandat 6477.126 kb on - strandat 6477.134 kb on + strandat 6477.205 kb on - strandat 6477.242 kb on + strandat 6477.242 kb on + strandat 6477.242 kb on + strandat 6477.242 kb on + strandat 6477.242 kb on + strandat 6477.242 kb on + strandat 6477.242 kb on + strandat 6477.242 kb on + strandat 6477.242 kb on + strandat 6477.242 kb on + strandat 6477.243 kb on - strandat 6477.243 kb on - strandat 6477.243 kb on - strandat 6477.243 kb on - strandat 6477.243 kb on - strandat 6477.243 kb on - strandat 6477.243 kb on - strandat 6477.243 kb on - strandat 6477.243 kb on - strandat 6477.243 kb on - strandat 6477.420 kb on + strand, within Pf6N2E2_5665at 6477.421 kb on - strand, within Pf6N2E2_5665at 6477.421 kb on - strand, within Pf6N2E2_5665at 6477.421 kb on - strand, within Pf6N2E2_5665at 6477.454 kb on + strand, within Pf6N2E2_5665at 6477.454 kb on + strand, within Pf6N2E2_5665at 6477.455 kb on - strand, within Pf6N2E2_5665at 6477.455 kb on - strand, within Pf6N2E2_5665at 6477.575 kb on + strand, within Pf6N2E2_5665at 6477.575 kb on + strand, within Pf6N2E2_5665at 6477.575 kb on + strand, within Pf6N2E2_5665at 6477.598 kb on + strand, within Pf6N2E2_5665at 6477.598 kb on + strand, within Pf6N2E2_5665at 6477.599 kb on - strand, within Pf6N2E2_5665at 6477.614 kb on - strand, within Pf6N2E2_5665at 6477.614 kb on - strand, within Pf6N2E2_5665at 6477.651 kb on - strand, within Pf6N2E2_5665at 6477.676 kb on + strand, within Pf6N2E2_5665at 6477.676 kb on + strand, within Pf6N2E2_5665at 6477.676 kb on + strand, within Pf6N2E2_5665at 6477.676 kb on + strand, within Pf6N2E2_5665at 6477.698 kb on + strand, within Pf6N2E2_5665at 6477.699 kb on - strand, within Pf6N2E2_5665at 6477.699 kb on - strand, within Pf6N2E2_5665

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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6,474,834 - -1.4
6,474,916 + +0.1
6,474,916 + -0.1
6,474,916 + -1.6
6,474,916 + -1.2
6,474,916 + +1.9
6,474,916 + +0.0
6,474,917 - -2.4
6,474,917 - -1.5
6,474,943 - -0.9
6,474,943 - +0.3
6,474,949 + -1.7
6,475,041 + Pf6N2E2_5663 0.17 +1.7
6,475,042 - Pf6N2E2_5663 0.17 -1.2
6,475,042 - Pf6N2E2_5663 0.17 -2.0
6,475,309 + Pf6N2E2_5663 0.52 -1.3
6,475,309 + Pf6N2E2_5663 0.52 +0.3
6,475,310 - Pf6N2E2_5663 0.52 -2.6
6,475,467 - Pf6N2E2_5663 0.72 -1.0
6,475,467 - Pf6N2E2_5663 0.72 -0.9
6,475,587 + Pf6N2E2_5663 0.88 +0.9
6,475,676 - -0.6
6,475,676 - -1.7
6,475,734 + +0.3
6,475,735 - -0.4
6,475,735 - +0.2
6,475,762 - -0.1
6,475,762 - -0.3
6,475,808 - -1.9
6,475,833 - -2.3
6,475,902 + Pf6N2E2_5664 0.11 -2.4
6,475,903 - Pf6N2E2_5664 0.11 -0.8
6,475,903 - Pf6N2E2_5664 0.11 -1.1
6,476,210 + Pf6N2E2_5664 0.43 -0.7
6,476,497 + Pf6N2E2_5664 0.72 -1.6
6,476,498 - Pf6N2E2_5664 0.72 -0.9
6,476,532 + Pf6N2E2_5664 0.76 -1.7
6,476,533 - Pf6N2E2_5664 0.76 -1.0
6,476,533 - Pf6N2E2_5664 0.76 -0.8
6,476,533 - Pf6N2E2_5664 0.76 -1.0
6,476,556 + Pf6N2E2_5664 0.78 -0.4
6,476,556 + Pf6N2E2_5664 0.78 +0.4
6,476,556 + Pf6N2E2_5664 0.78 -2.4
6,476,557 - Pf6N2E2_5664 0.78 -0.5
6,476,557 - Pf6N2E2_5664 0.78 -1.8
6,476,559 + Pf6N2E2_5664 0.78 -0.3
6,476,560 - Pf6N2E2_5664 0.78 -0.7
6,476,560 - Pf6N2E2_5664 0.78 -0.8
6,476,802 + -0.8
6,476,802 + -0.8
6,476,803 - +0.1
6,476,976 + +0.7
6,476,976 + +0.1
6,476,976 + -0.2
6,476,976 + +0.7
6,476,976 + +0.3
6,476,976 + +1.0
6,476,976 + -1.0
6,476,977 - -0.2
6,476,977 - -2.0
6,477,034 - +1.2
6,477,051 - -0.6
6,477,081 - +0.3
6,477,081 - +0.6
6,477,081 - -0.3
6,477,125 + -1.0
6,477,125 + +0.5
6,477,126 - -1.5
6,477,126 - -1.8
6,477,126 - +0.1
6,477,134 + -0.5
6,477,205 - -0.0
6,477,242 + -1.8
6,477,242 + -0.6
6,477,242 + -1.3
6,477,242 + -0.6
6,477,242 + -0.7
6,477,242 + +0.6
6,477,242 + -0.9
6,477,242 + -0.7
6,477,242 + +0.1
6,477,242 + -2.0
6,477,243 - +0.6
6,477,243 - -2.4
6,477,243 - -1.9
6,477,243 - -2.9
6,477,243 - -0.9
6,477,243 - -1.9
6,477,243 - -0.2
6,477,243 - -1.8
6,477,243 - -1.4
6,477,243 - -0.5
6,477,420 + Pf6N2E2_5665 0.19 -0.0
6,477,421 - Pf6N2E2_5665 0.20 -0.3
6,477,421 - Pf6N2E2_5665 0.20 +1.3
6,477,421 - Pf6N2E2_5665 0.20 -1.3
6,477,454 + Pf6N2E2_5665 0.22 +0.2
6,477,454 + Pf6N2E2_5665 0.22 +1.7
6,477,455 - Pf6N2E2_5665 0.22 -1.1
6,477,455 - Pf6N2E2_5665 0.22 +1.9
6,477,575 + Pf6N2E2_5665 0.32 -0.2
6,477,575 + Pf6N2E2_5665 0.32 -1.1
6,477,575 + Pf6N2E2_5665 0.32 +0.2
6,477,598 + Pf6N2E2_5665 0.34 +0.6
6,477,598 + Pf6N2E2_5665 0.34 +0.3
6,477,599 - Pf6N2E2_5665 0.34 -1.7
6,477,614 - Pf6N2E2_5665 0.35 -1.8
6,477,614 - Pf6N2E2_5665 0.35 -0.4
6,477,651 - Pf6N2E2_5665 0.38 +0.2
6,477,676 + Pf6N2E2_5665 0.40 -0.2
6,477,676 + Pf6N2E2_5665 0.40 +1.8
6,477,676 + Pf6N2E2_5665 0.40 +2.3
6,477,676 + Pf6N2E2_5665 0.40 +0.9
6,477,698 + Pf6N2E2_5665 0.42 -1.1
6,477,699 - Pf6N2E2_5665 0.42 -1.3
6,477,699 - Pf6N2E2_5665 0.42 -2.4

Or see this region's nucleotide sequence