Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5645 and Pf6N2E2_5646 are separated by 236 nucleotides Pf6N2E2_5646 and Pf6N2E2_5647 are separated by 23 nucleotides Pf6N2E2_5647 and Pf6N2E2_5648 are separated by 190 nucleotides
Pf6N2E2_5645 - Transcriptional regulator, LysR family, at 6,458,297 to 6,459,244
_5645
Pf6N2E2_5646 - PROBABLE MEMBRANE PROTEIN, at 6,459,481 to 6,459,870
_5646
Pf6N2E2_5647 - Transcriptional regulator, TetR family, at 6,459,894 to 6,460,502
_5647
Pf6N2E2_5648 - Outer membrane protein romA, at 6,460,693 to 6,461,751
_5648
Position (kb)
6459
6460
6461 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6458.894 kb on + strand, within Pf6N2E2_5645 at 6458.895 kb on - strand, within Pf6N2E2_5645 at 6458.895 kb on - strand, within Pf6N2E2_5645 at 6458.895 kb on - strand, within Pf6N2E2_5645 at 6458.895 kb on - strand, within Pf6N2E2_5645 at 6458.912 kb on - strand, within Pf6N2E2_5645 at 6459.144 kb on - strand, within Pf6N2E2_5645 at 6459.144 kb on - strand, within Pf6N2E2_5645 at 6459.296 kb on + strand at 6459.298 kb on + strand at 6459.298 kb on + strand at 6459.298 kb on + strand at 6459.298 kb on + strand at 6459.299 kb on - strand at 6459.299 kb on - strand at 6459.299 kb on - strand at 6459.299 kb on - strand at 6459.559 kb on + strand, within Pf6N2E2_5646 at 6459.604 kb on + strand, within Pf6N2E2_5646 at 6459.604 kb on + strand, within Pf6N2E2_5646 at 6459.868 kb on + strand at 6459.869 kb on - strand at 6460.273 kb on + strand, within Pf6N2E2_5647 at 6460.273 kb on + strand, within Pf6N2E2_5647 at 6460.274 kb on - strand, within Pf6N2E2_5647 at 6460.360 kb on + strand, within Pf6N2E2_5647 at 6460.360 kb on + strand, within Pf6N2E2_5647 at 6460.360 kb on + strand, within Pf6N2E2_5647 at 6460.360 kb on + strand, within Pf6N2E2_5647 at 6460.361 kb on - strand, within Pf6N2E2_5647 at 6460.361 kb on - strand, within Pf6N2E2_5647 at 6460.361 kb on - strand, within Pf6N2E2_5647 at 6460.361 kb on - strand, within Pf6N2E2_5647 at 6460.361 kb on - strand, within Pf6N2E2_5647 at 6460.532 kb on + strand at 6460.532 kb on + strand at 6460.685 kb on - strand at 6460.762 kb on + strand at 6460.763 kb on - strand at 6460.812 kb on + strand, within Pf6N2E2_5648 at 6460.813 kb on - strand, within Pf6N2E2_5648 at 6461.104 kb on + strand, within Pf6N2E2_5648 at 6461.105 kb on - strand, within Pf6N2E2_5648 at 6461.105 kb on - strand, within Pf6N2E2_5648 at 6461.461 kb on + strand, within Pf6N2E2_5648 at 6461.461 kb on + strand, within Pf6N2E2_5648 at 6461.461 kb on + strand, within Pf6N2E2_5648 at 6461.461 kb on + strand, within Pf6N2E2_5648 at 6461.462 kb on - strand, within Pf6N2E2_5648 at 6461.462 kb on - strand, within Pf6N2E2_5648 at 6461.462 kb on - strand, within Pf6N2E2_5648 at 6461.462 kb on - strand, within Pf6N2E2_5648 at 6461.462 kb on - strand, within Pf6N2E2_5648 at 6461.462 kb on - strand, within Pf6N2E2_5648 at 6461.464 kb on - strand, within Pf6N2E2_5648
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 6,458,894 + Pf6N2E2_5645 0.63 +0.1 6,458,895 - Pf6N2E2_5645 0.63 +0.7 6,458,895 - Pf6N2E2_5645 0.63 +1.5 6,458,895 - Pf6N2E2_5645 0.63 -0.3 6,458,895 - Pf6N2E2_5645 0.63 -0.3 6,458,912 - Pf6N2E2_5645 0.65 -1.3 6,459,144 - Pf6N2E2_5645 0.89 +1.4 6,459,144 - Pf6N2E2_5645 0.89 -0.4 6,459,296 + +0.1 6,459,298 + +1.0 6,459,298 + +1.5 6,459,298 + +0.5 6,459,298 + +0.4 6,459,299 - -0.3 6,459,299 - -0.1 6,459,299 - +0.6 6,459,299 - +1.3 6,459,559 + Pf6N2E2_5646 0.20 -0.3 6,459,604 + Pf6N2E2_5646 0.32 -2.2 6,459,604 + Pf6N2E2_5646 0.32 +1.9 6,459,868 + -0.8 6,459,869 - +0.5 6,460,273 + Pf6N2E2_5647 0.62 -0.7 6,460,273 + Pf6N2E2_5647 0.62 -1.9 6,460,274 - Pf6N2E2_5647 0.62 +1.1 6,460,360 + Pf6N2E2_5647 0.77 -0.1 6,460,360 + Pf6N2E2_5647 0.77 -1.4 6,460,360 + Pf6N2E2_5647 0.77 +0.3 6,460,360 + Pf6N2E2_5647 0.77 -0.3 6,460,361 - Pf6N2E2_5647 0.77 -0.1 6,460,361 - Pf6N2E2_5647 0.77 -2.3 6,460,361 - Pf6N2E2_5647 0.77 -1.7 6,460,361 - Pf6N2E2_5647 0.77 -1.2 6,460,361 - Pf6N2E2_5647 0.77 -1.1 6,460,532 + -0.3 6,460,532 + -1.3 6,460,685 - -1.8 6,460,762 + -0.4 6,460,763 - -0.2 6,460,812 + Pf6N2E2_5648 0.11 -0.2 6,460,813 - Pf6N2E2_5648 0.11 -0.1 6,461,104 + Pf6N2E2_5648 0.39 +0.6 6,461,105 - Pf6N2E2_5648 0.39 -0.2 6,461,105 - Pf6N2E2_5648 0.39 +0.9 6,461,461 + Pf6N2E2_5648 0.73 +0.7 6,461,461 + Pf6N2E2_5648 0.73 -0.4 6,461,461 + Pf6N2E2_5648 0.73 -2.0 6,461,461 + Pf6N2E2_5648 0.73 +0.2 6,461,462 - Pf6N2E2_5648 0.73 -0.1 6,461,462 - Pf6N2E2_5648 0.73 -0.1 6,461,462 - Pf6N2E2_5648 0.73 -0.2 6,461,462 - Pf6N2E2_5648 0.73 +0.2 6,461,462 - Pf6N2E2_5648 0.73 +0.8 6,461,462 - Pf6N2E2_5648 0.73 -0.6 6,461,464 - Pf6N2E2_5648 0.73 +0.5
Or see this region's nucleotide sequence