Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5599

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5598 and Pf6N2E2_5599 overlap by 4 nucleotidesPf6N2E2_5599 and Pf6N2E2_5600 are separated by 130 nucleotides Pf6N2E2_5598 - Electron transport complex protein RnfB, at 6,413,451 to 6,414,470 _5598 Pf6N2E2_5599 - Electron transport complex protein RnfA, at 6,414,467 to 6,415,039 _5599 Pf6N2E2_5600 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 6,415,170 to 6,417,143 _5600 Position (kb) 6414 6415 6416Strain fitness (log2 ratio) -1 0 1at 6413.535 kb on - strandat 6414.563 kb on - strand, within Pf6N2E2_5599at 6414.563 kb on - strand, within Pf6N2E2_5599at 6414.702 kb on - strand, within Pf6N2E2_5599at 6414.702 kb on - strand, within Pf6N2E2_5599at 6414.702 kb on - strand, within Pf6N2E2_5599at 6414.859 kb on - strand, within Pf6N2E2_5599at 6415.067 kb on - strandat 6415.067 kb on - strandat 6415.111 kb on - strandat 6415.111 kb on - strandat 6415.171 kb on + strandat 6415.171 kb on + strandat 6415.171 kb on + strandat 6415.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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6,413,535 - +0.0
6,414,563 - Pf6N2E2_5599 0.17 +1.7
6,414,563 - Pf6N2E2_5599 0.17 +0.7
6,414,702 - Pf6N2E2_5599 0.41 -0.6
6,414,702 - Pf6N2E2_5599 0.41 +0.2
6,414,702 - Pf6N2E2_5599 0.41 +0.2
6,414,859 - Pf6N2E2_5599 0.68 +1.2
6,415,067 - +0.9
6,415,067 - -0.2
6,415,111 - -1.4
6,415,111 - +0.9
6,415,171 + +1.7
6,415,171 + +1.1
6,415,171 + +0.1
6,415,172 - -1.1

Or see this region's nucleotide sequence