Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_546

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_545 and Pf6N2E2_546 are separated by 198 nucleotidesPf6N2E2_546 and Pf6N2E2_547 are separated by 221 nucleotidesPf6N2E2_547 and Pf6N2E2_548 are separated by 13 nucleotides Pf6N2E2_545 - Predicted aminoglycoside phosphotransferase, at 614,275 to 615,342 _545 Pf6N2E2_546 - FIG00966904: hypothetical protein, at 615,541 to 615,936 _546 Pf6N2E2_547 - Phophatidylinositol-4-phosphate 5-kinase (EC 2.7.1.68), at 616,158 to 616,700 _547 Pf6N2E2_548 - VgrG protein, at 616,714 to 618,723 _548 Position (kb) 615 616Strain fitness (log2 ratio) -2 -1 0 1at 614.693 kb on + strand, within Pf6N2E2_545at 615.011 kb on + strand, within Pf6N2E2_545at 615.011 kb on + strand, within Pf6N2E2_545at 615.012 kb on - strand, within Pf6N2E2_545at 615.012 kb on - strand, within Pf6N2E2_545at 615.012 kb on - strand, within Pf6N2E2_545at 615.053 kb on + strand, within Pf6N2E2_545at 615.053 kb on + strand, within Pf6N2E2_545at 615.194 kb on + strand, within Pf6N2E2_545at 615.194 kb on + strand, within Pf6N2E2_545at 615.195 kb on - strand, within Pf6N2E2_545at 615.195 kb on - strand, within Pf6N2E2_545at 615.272 kb on + strandat 615.360 kb on - strandat 615.429 kb on + strandat 615.429 kb on + strandat 615.430 kb on - strandat 615.430 kb on - strandat 615.430 kb on - strandat 615.430 kb on - strandat 615.431 kb on + strandat 615.431 kb on + strandat 615.431 kb on + strandat 615.431 kb on + strandat 615.431 kb on + strandat 615.431 kb on + strandat 615.431 kb on + strandat 615.431 kb on + strandat 615.431 kb on + strandat 615.431 kb on + strandat 615.431 kb on + strandat 615.432 kb on - strandat 615.432 kb on - strandat 615.432 kb on - strandat 615.432 kb on - strandat 615.432 kb on - strandat 615.432 kb on - strandat 615.432 kb on - strandat 615.432 kb on - strandat 615.501 kb on + strandat 615.859 kb on - strand, within Pf6N2E2_546at 615.876 kb on + strand, within Pf6N2E2_546at 615.877 kb on - strand, within Pf6N2E2_546at 615.938 kb on + strandat 615.963 kb on + strandat 615.963 kb on + strandat 615.963 kb on + strandat 615.963 kb on + strandat 615.964 kb on - strandat 615.964 kb on - strandat 615.964 kb on - strandat 615.964 kb on - strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.972 kb on + strandat 615.973 kb on - strandat 615.973 kb on - strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.976 kb on + strandat 615.977 kb on - strandat 615.977 kb on - strandat 615.977 kb on - strandat 615.977 kb on - strandat 615.977 kb on - strandat 615.984 kb on + strandat 615.984 kb on + strandat 615.984 kb on + strandat 615.984 kb on + strandat 615.985 kb on - strandat 615.985 kb on - strandat 615.985 kb on - strandat 616.092 kb on + strandat 616.160 kb on - strandat 616.160 kb on - strandat 616.160 kb on - strandat 616.160 kb on - strandat 616.396 kb on + strand, within Pf6N2E2_547at 616.397 kb on - strand, within Pf6N2E2_547at 616.397 kb on - strand, within Pf6N2E2_547at 616.433 kb on - strand, within Pf6N2E2_547at 616.469 kb on - strand, within Pf6N2E2_547at 616.469 kb on - strand, within Pf6N2E2_547at 616.576 kb on + strand, within Pf6N2E2_547

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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614,693 + Pf6N2E2_545 0.39 -0.1
615,011 + Pf6N2E2_545 0.69 +0.4
615,011 + Pf6N2E2_545 0.69 -0.2
615,012 - Pf6N2E2_545 0.69 -0.4
615,012 - Pf6N2E2_545 0.69 -0.1
615,012 - Pf6N2E2_545 0.69 +1.4
615,053 + Pf6N2E2_545 0.73 -0.1
615,053 + Pf6N2E2_545 0.73 +0.3
615,194 + Pf6N2E2_545 0.86 +0.6
615,194 + Pf6N2E2_545 0.86 -0.1
615,195 - Pf6N2E2_545 0.86 -0.3
615,195 - Pf6N2E2_545 0.86 -0.1
615,272 + -0.1
615,360 - +0.2
615,429 + +0.4
615,429 + +0.6
615,430 - -2.6
615,430 - -0.7
615,430 - -0.5
615,430 - +0.8
615,431 + -0.6
615,431 + +0.3
615,431 + +0.2
615,431 + +0.7
615,431 + -1.1
615,431 + +1.1
615,431 + -0.2
615,431 + -0.1
615,431 + +0.1
615,431 + -0.9
615,431 + -0.5
615,432 - -0.9
615,432 - -0.0
615,432 - -1.4
615,432 - -0.0
615,432 - -2.0
615,432 - -0.1
615,432 - -0.3
615,432 - +0.1
615,501 + +0.5
615,859 - Pf6N2E2_546 0.80 -0.3
615,876 + Pf6N2E2_546 0.85 -1.4
615,877 - Pf6N2E2_546 0.85 -0.9
615,938 + +0.7
615,963 + -1.1
615,963 + +0.1
615,963 + +0.7
615,963 + +0.7
615,964 - -0.9
615,964 - -0.9
615,964 - +0.2
615,964 - +0.7
615,967 + +0.5
615,967 + -0.4
615,967 + -0.9
615,967 + +0.4
615,967 + +0.6
615,967 + -0.1
615,967 + +0.1
615,968 - -0.4
615,968 - -2.0
615,968 - -0.1
615,968 - -1.4
615,968 - -0.2
615,968 - +0.1
615,968 - -0.0
615,968 - +0.0
615,968 - -0.6
615,968 - +1.4
615,968 - +0.1
615,968 - +1.4
615,968 - +0.3
615,972 + +1.2
615,973 - +0.2
615,973 - -2.1
615,976 + +0.1
615,976 + +0.0
615,976 + -0.9
615,976 + -2.3
615,976 + +0.3
615,976 + -1.3
615,976 + -0.2
615,976 + -0.1
615,976 + -0.3
615,976 + +0.0
615,977 - -0.1
615,977 - +0.5
615,977 - +0.6
615,977 - +0.8
615,977 - +1.0
615,984 + +0.7
615,984 + -0.0
615,984 + -0.4
615,984 + -0.2
615,985 - +0.7
615,985 - +1.0
615,985 - -2.6
616,092 + +1.1
616,160 - -0.3
616,160 - -0.9
616,160 - +0.0
616,160 - +1.1
616,396 + Pf6N2E2_547 0.44 -0.5
616,397 - Pf6N2E2_547 0.44 -0.2
616,397 - Pf6N2E2_547 0.44 +0.9
616,433 - Pf6N2E2_547 0.51 -0.2
616,469 - Pf6N2E2_547 0.57 +0.2
616,469 - Pf6N2E2_547 0.57 -0.1
616,576 + Pf6N2E2_547 0.77 -0.4

Or see this region's nucleotide sequence