Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_523

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_522 and Pf6N2E2_523 are separated by 77 nucleotidesPf6N2E2_523 and Pf6N2E2_524 are separated by 148 nucleotides Pf6N2E2_522 - Inositol transport system sugar-binding protein, at 590,940 to 591,866 _522 Pf6N2E2_523 - Inositol transport system ATP-binding protein, at 591,944 to 593,497 _523 Pf6N2E2_524 - Inositol transport system permease protein, at 593,646 to 594,668 _524 Position (kb) 591 592 593 594Strain fitness (log2 ratio) -2 -1 0 1 2at 591.060 kb on + strand, within Pf6N2E2_522at 591.061 kb on - strand, within Pf6N2E2_522at 591.061 kb on - strand, within Pf6N2E2_522at 591.478 kb on - strand, within Pf6N2E2_522at 591.658 kb on + strand, within Pf6N2E2_522at 591.770 kb on + strand, within Pf6N2E2_522at 591.770 kb on + strand, within Pf6N2E2_522at 591.897 kb on - strandat 591.935 kb on + strandat 591.935 kb on + strandat 591.935 kb on + strandat 591.999 kb on + strandat 591.999 kb on + strandat 591.999 kb on + strandat 591.999 kb on + strandat 591.999 kb on + strandat 591.999 kb on + strandat 592.000 kb on - strandat 592.000 kb on - strandat 592.002 kb on + strandat 592.003 kb on - strandat 592.003 kb on - strandat 592.003 kb on - strandat 592.017 kb on - strandat 592.017 kb on - strandat 592.077 kb on + strandat 592.077 kb on + strandat 592.077 kb on + strandat 592.077 kb on + strandat 592.077 kb on + strandat 592.077 kb on + strandat 592.078 kb on - strandat 592.169 kb on + strand, within Pf6N2E2_523at 592.169 kb on + strand, within Pf6N2E2_523at 592.170 kb on - strand, within Pf6N2E2_523at 592.482 kb on - strand, within Pf6N2E2_523at 592.482 kb on - strand, within Pf6N2E2_523at 592.482 kb on - strand, within Pf6N2E2_523at 592.482 kb on - strand, within Pf6N2E2_523at 592.482 kb on - strand, within Pf6N2E2_523at 592.595 kb on + strand, within Pf6N2E2_523at 592.595 kb on + strand, within Pf6N2E2_523at 592.595 kb on + strand, within Pf6N2E2_523at 592.595 kb on + strand, within Pf6N2E2_523at 592.595 kb on + strand, within Pf6N2E2_523at 592.595 kb on + strand, within Pf6N2E2_523at 592.595 kb on + strand, within Pf6N2E2_523at 592.595 kb on + strand, within Pf6N2E2_523at 592.595 kb on + strand, within Pf6N2E2_523at 592.595 kb on + strand, within Pf6N2E2_523at 592.664 kb on + strand, within Pf6N2E2_523at 592.664 kb on + strand, within Pf6N2E2_523at 592.664 kb on + strand, within Pf6N2E2_523at 592.664 kb on + strand, within Pf6N2E2_523at 592.664 kb on + strand, within Pf6N2E2_523at 592.665 kb on - strand, within Pf6N2E2_523at 592.665 kb on - strand, within Pf6N2E2_523at 592.665 kb on - strand, within Pf6N2E2_523at 592.665 kb on - strand, within Pf6N2E2_523at 592.665 kb on - strand, within Pf6N2E2_523at 592.665 kb on - strand, within Pf6N2E2_523at 592.924 kb on + strand, within Pf6N2E2_523at 592.963 kb on + strand, within Pf6N2E2_523at 593.087 kb on + strand, within Pf6N2E2_523at 593.087 kb on + strand, within Pf6N2E2_523at 593.087 kb on + strand, within Pf6N2E2_523at 593.087 kb on + strand, within Pf6N2E2_523at 593.088 kb on - strand, within Pf6N2E2_523at 593.312 kb on + strand, within Pf6N2E2_523at 593.312 kb on + strand, within Pf6N2E2_523at 593.327 kb on + strand, within Pf6N2E2_523at 593.328 kb on - strand, within Pf6N2E2_523at 593.328 kb on - strand, within Pf6N2E2_523at 593.383 kb on - strandat 593.515 kb on + strandat 593.515 kb on + strandat 593.515 kb on + strandat 593.515 kb on + strandat 593.516 kb on - strandat 593.549 kb on - strandat 593.645 kb on + strandat 593.646 kb on - strandat 593.720 kb on + strandat 593.720 kb on + strandat 593.721 kb on - strandat 593.721 kb on - strandat 593.721 kb on - strandat 594.080 kb on + strand, within Pf6N2E2_524at 594.141 kb on + strand, within Pf6N2E2_524at 594.141 kb on + strand, within Pf6N2E2_524at 594.141 kb on + strand, within Pf6N2E2_524at 594.141 kb on + strand, within Pf6N2E2_524at 594.141 kb on + strand, within Pf6N2E2_524at 594.142 kb on - strand, within Pf6N2E2_524at 594.142 kb on - strand, within Pf6N2E2_524at 594.180 kb on + strand, within Pf6N2E2_524at 594.180 kb on + strand, within Pf6N2E2_524at 594.180 kb on + strand, within Pf6N2E2_524at 594.181 kb on - strand, within Pf6N2E2_524at 594.245 kb on + strand, within Pf6N2E2_524at 594.268 kb on - strand, within Pf6N2E2_524at 594.276 kb on + strand, within Pf6N2E2_524at 594.276 kb on + strand, within Pf6N2E2_524at 594.276 kb on + strand, within Pf6N2E2_524at 594.277 kb on - strand, within Pf6N2E2_524at 594.277 kb on - strand, within Pf6N2E2_524at 594.277 kb on - strand, within Pf6N2E2_524at 594.277 kb on - strand, within Pf6N2E2_524at 594.277 kb on - strand, within Pf6N2E2_524at 594.277 kb on - strand, within Pf6N2E2_524at 594.282 kb on + strand, within Pf6N2E2_524at 594.282 kb on + strand, within Pf6N2E2_524at 594.282 kb on + strand, within Pf6N2E2_524at 594.283 kb on - strand, within Pf6N2E2_524at 594.354 kb on + strand, within Pf6N2E2_524at 594.354 kb on + strand, within Pf6N2E2_524at 594.355 kb on - strand, within Pf6N2E2_524at 594.355 kb on - strand, within Pf6N2E2_524at 594.355 kb on - strand, within Pf6N2E2_524at 594.441 kb on + strand, within Pf6N2E2_524at 594.441 kb on + strand, within Pf6N2E2_524at 594.442 kb on - strand, within Pf6N2E2_524at 594.442 kb on - strand, within Pf6N2E2_524

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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591,060 + Pf6N2E2_522 0.13 +0.5
591,061 - Pf6N2E2_522 0.13 +0.1
591,061 - Pf6N2E2_522 0.13 -0.1
591,478 - Pf6N2E2_522 0.58 -0.6
591,658 + Pf6N2E2_522 0.77 +0.0
591,770 + Pf6N2E2_522 0.90 -1.6
591,770 + Pf6N2E2_522 0.90 -0.4
591,897 - -2.3
591,935 + +1.5
591,935 + -1.1
591,935 + -0.1
591,999 + -0.1
591,999 + +0.2
591,999 + +0.7
591,999 + +1.0
591,999 + -0.8
591,999 + -1.1
592,000 - -0.3
592,000 - -2.7
592,002 + +0.8
592,003 - +1.3
592,003 - +0.2
592,003 - +1.4
592,017 - -0.3
592,017 - -1.0
592,077 + -0.4
592,077 + -0.0
592,077 + +0.2
592,077 + +0.3
592,077 + +1.1
592,077 + -0.4
592,078 - -0.3
592,169 + Pf6N2E2_523 0.14 +0.6
592,169 + Pf6N2E2_523 0.14 +0.5
592,170 - Pf6N2E2_523 0.15 -0.1
592,482 - Pf6N2E2_523 0.35 +2.3
592,482 - Pf6N2E2_523 0.35 +0.2
592,482 - Pf6N2E2_523 0.35 +0.4
592,482 - Pf6N2E2_523 0.35 +1.1
592,482 - Pf6N2E2_523 0.35 -1.2
592,595 + Pf6N2E2_523 0.42 -0.3
592,595 + Pf6N2E2_523 0.42 -0.6
592,595 + Pf6N2E2_523 0.42 +0.3
592,595 + Pf6N2E2_523 0.42 +0.8
592,595 + Pf6N2E2_523 0.42 +2.1
592,595 + Pf6N2E2_523 0.42 +1.0
592,595 + Pf6N2E2_523 0.42 +0.6
592,595 + Pf6N2E2_523 0.42 +0.0
592,595 + Pf6N2E2_523 0.42 -1.4
592,595 + Pf6N2E2_523 0.42 +1.2
592,664 + Pf6N2E2_523 0.46 -0.3
592,664 + Pf6N2E2_523 0.46 -0.4
592,664 + Pf6N2E2_523 0.46 +1.6
592,664 + Pf6N2E2_523 0.46 +0.4
592,664 + Pf6N2E2_523 0.46 +0.1
592,665 - Pf6N2E2_523 0.46 -0.0
592,665 - Pf6N2E2_523 0.46 -0.3
592,665 - Pf6N2E2_523 0.46 +0.7
592,665 - Pf6N2E2_523 0.46 +0.2
592,665 - Pf6N2E2_523 0.46 -0.1
592,665 - Pf6N2E2_523 0.46 +0.1
592,924 + Pf6N2E2_523 0.63 +0.5
592,963 + Pf6N2E2_523 0.66 +0.5
593,087 + Pf6N2E2_523 0.74 +0.1
593,087 + Pf6N2E2_523 0.74 -0.3
593,087 + Pf6N2E2_523 0.74 -0.9
593,087 + Pf6N2E2_523 0.74 -0.7
593,088 - Pf6N2E2_523 0.74 -0.4
593,312 + Pf6N2E2_523 0.88 +1.6
593,312 + Pf6N2E2_523 0.88 +0.3
593,327 + Pf6N2E2_523 0.89 +1.0
593,328 - Pf6N2E2_523 0.89 +0.6
593,328 - Pf6N2E2_523 0.89 -0.9
593,383 - +0.1
593,515 + -0.2
593,515 + +0.3
593,515 + -0.6
593,515 + +0.4
593,516 - +0.7
593,549 - -0.9
593,645 + +0.7
593,646 - +0.4
593,720 + -0.5
593,720 + +1.4
593,721 - +0.6
593,721 - +0.4
593,721 - -0.9
594,080 + Pf6N2E2_524 0.42 +1.2
594,141 + Pf6N2E2_524 0.48 -0.3
594,141 + Pf6N2E2_524 0.48 -0.9
594,141 + Pf6N2E2_524 0.48 +0.4
594,141 + Pf6N2E2_524 0.48 +0.0
594,141 + Pf6N2E2_524 0.48 -0.0
594,142 - Pf6N2E2_524 0.48 +1.2
594,142 - Pf6N2E2_524 0.48 -0.7
594,180 + Pf6N2E2_524 0.52 +0.2
594,180 + Pf6N2E2_524 0.52 -0.5
594,180 + Pf6N2E2_524 0.52 +1.4
594,181 - Pf6N2E2_524 0.52 +1.2
594,245 + Pf6N2E2_524 0.59 +0.5
594,268 - Pf6N2E2_524 0.61 +0.6
594,276 + Pf6N2E2_524 0.62 +0.2
594,276 + Pf6N2E2_524 0.62 -1.0
594,276 + Pf6N2E2_524 0.62 +0.3
594,277 - Pf6N2E2_524 0.62 -0.7
594,277 - Pf6N2E2_524 0.62 -0.1
594,277 - Pf6N2E2_524 0.62 -0.4
594,277 - Pf6N2E2_524 0.62 +1.0
594,277 - Pf6N2E2_524 0.62 -0.1
594,277 - Pf6N2E2_524 0.62 -1.1
594,282 + Pf6N2E2_524 0.62 +1.9
594,282 + Pf6N2E2_524 0.62 +0.4
594,282 + Pf6N2E2_524 0.62 +0.7
594,283 - Pf6N2E2_524 0.62 -1.4
594,354 + Pf6N2E2_524 0.69 -0.6
594,354 + Pf6N2E2_524 0.69 -0.9
594,355 - Pf6N2E2_524 0.69 -0.1
594,355 - Pf6N2E2_524 0.69 +0.9
594,355 - Pf6N2E2_524 0.69 +0.9
594,441 + Pf6N2E2_524 0.78 +0.4
594,441 + Pf6N2E2_524 0.78 -1.2
594,442 - Pf6N2E2_524 0.78 +0.0
594,442 - Pf6N2E2_524 0.78 -0.3

Or see this region's nucleotide sequence