Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4891

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4889 and Pf6N2E2_4890 are separated by 9 nucleotidesPf6N2E2_4890 and Pf6N2E2_4891 are separated by 128 nucleotidesPf6N2E2_4891 and Pf6N2E2_4892 are separated by 278 nucleotides Pf6N2E2_4889 - Putative transport protein, at 5,639,540 to 5,640,937 _4889 Pf6N2E2_4890 - Single-stranded DNA-binding protein, at 5,640,947 to 5,641,462 _4890 Pf6N2E2_4891 - hypothetical protein, at 5,641,591 to 5,642,064 _4891 Pf6N2E2_4892 - hypothetical protein, at 5,642,343 to 5,643,197 _4892 Position (kb) 5641 5642 5643Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5640.728 kb on + strand, within Pf6N2E2_4889at 5640.728 kb on + strand, within Pf6N2E2_4889at 5640.728 kb on + strand, within Pf6N2E2_4889at 5640.728 kb on + strand, within Pf6N2E2_4889at 5640.728 kb on + strand, within Pf6N2E2_4889at 5640.728 kb on + strand, within Pf6N2E2_4889at 5640.851 kb on + strandat 5640.851 kb on + strandat 5640.851 kb on + strandat 5640.851 kb on + strandat 5640.851 kb on + strandat 5640.851 kb on + strandat 5640.851 kb on + strandat 5640.851 kb on + strandat 5640.853 kb on + strandat 5640.853 kb on + strandat 5640.853 kb on + strandat 5640.853 kb on + strandat 5640.922 kb on + strandat 5640.935 kb on + strandat 5640.935 kb on + strandat 5641.477 kb on + strandat 5641.478 kb on - strandat 5641.488 kb on + strandat 5641.488 kb on + strandat 5641.488 kb on + strandat 5641.488 kb on + strandat 5641.489 kb on - strandat 5641.533 kb on + strandat 5641.534 kb on - strandat 5641.534 kb on - strandat 5641.609 kb on + strandat 5641.609 kb on + strandat 5641.610 kb on - strandat 5641.610 kb on - strandat 5641.610 kb on - strandat 5641.610 kb on - strandat 5641.679 kb on - strand, within Pf6N2E2_4891at 5641.679 kb on - strand, within Pf6N2E2_4891at 5641.765 kb on + strand, within Pf6N2E2_4891at 5641.765 kb on + strand, within Pf6N2E2_4891at 5641.765 kb on + strand, within Pf6N2E2_4891at 5641.765 kb on + strand, within Pf6N2E2_4891at 5641.765 kb on + strand, within Pf6N2E2_4891at 5641.765 kb on + strand, within Pf6N2E2_4891at 5641.765 kb on + strand, within Pf6N2E2_4891at 5641.766 kb on - strand, within Pf6N2E2_4891at 5641.766 kb on - strand, within Pf6N2E2_4891at 5641.766 kb on - strand, within Pf6N2E2_4891at 5641.766 kb on - strand, within Pf6N2E2_4891at 5641.766 kb on - strand, within Pf6N2E2_4891at 5641.766 kb on - strand, within Pf6N2E2_4891at 5641.769 kb on + strand, within Pf6N2E2_4891at 5641.769 kb on + strand, within Pf6N2E2_4891at 5641.769 kb on + strand, within Pf6N2E2_4891at 5641.770 kb on - strand, within Pf6N2E2_4891at 5641.770 kb on - strand, within Pf6N2E2_4891at 5641.890 kb on + strand, within Pf6N2E2_4891at 5641.891 kb on - strand, within Pf6N2E2_4891at 5641.954 kb on + strand, within Pf6N2E2_4891at 5641.955 kb on - strand, within Pf6N2E2_4891at 5642.025 kb on + strandat 5642.026 kb on - strandat 5642.026 kb on - strandat 5642.075 kb on + strandat 5642.075 kb on + strandat 5642.076 kb on - strandat 5642.076 kb on - strandat 5642.076 kb on - strandat 5642.076 kb on - strandat 5642.076 kb on - strandat 5642.107 kb on + strandat 5642.107 kb on + strandat 5642.154 kb on + strandat 5642.154 kb on + strandat 5642.242 kb on - strandat 5642.248 kb on - strandat 5642.258 kb on + strandat 5642.258 kb on + strandat 5642.258 kb on + strandat 5642.259 kb on - strandat 5642.259 kb on - strandat 5642.259 kb on - strandat 5642.259 kb on - strandat 5642.264 kb on + strandat 5642.265 kb on - strandat 5642.265 kb on - strandat 5642.267 kb on + strandat 5642.268 kb on - strandat 5642.268 kb on - strandat 5642.335 kb on + strandat 5642.335 kb on + strandat 5642.336 kb on - strandat 5642.353 kb on + strandat 5642.365 kb on - strandat 5642.728 kb on + strand, within Pf6N2E2_4892at 5642.729 kb on - strand, within Pf6N2E2_4892at 5642.749 kb on + strand, within Pf6N2E2_4892at 5642.749 kb on + strand, within Pf6N2E2_4892at 5642.749 kb on + strand, within Pf6N2E2_4892at 5642.750 kb on - strand, within Pf6N2E2_4892at 5642.750 kb on - strand, within Pf6N2E2_4892at 5642.750 kb on - strand, within Pf6N2E2_4892at 5642.786 kb on - strand, within Pf6N2E2_4892at 5642.815 kb on + strand, within Pf6N2E2_4892at 5642.821 kb on + strand, within Pf6N2E2_4892at 5642.822 kb on - strand, within Pf6N2E2_4892at 5642.930 kb on - strand, within Pf6N2E2_4892at 5642.930 kb on - strand, within Pf6N2E2_4892at 5642.971 kb on + strand, within Pf6N2E2_4892at 5642.972 kb on - strand, within Pf6N2E2_4892

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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5,640,728 + Pf6N2E2_4889 0.85 -3.0
5,640,728 + Pf6N2E2_4889 0.85 -2.4
5,640,728 + Pf6N2E2_4889 0.85 -1.2
5,640,728 + Pf6N2E2_4889 0.85 -2.5
5,640,728 + Pf6N2E2_4889 0.85 +0.1
5,640,728 + Pf6N2E2_4889 0.85 -2.3
5,640,851 + -2.3
5,640,851 + +0.2
5,640,851 + -2.3
5,640,851 + -0.4
5,640,851 + -0.1
5,640,851 + -3.0
5,640,851 + -1.8
5,640,851 + -0.8
5,640,853 + +1.2
5,640,853 + +0.6
5,640,853 + -1.2
5,640,853 + -1.3
5,640,922 + -0.5
5,640,935 + -0.3
5,640,935 + -0.4
5,641,477 + -1.3
5,641,478 - +1.6
5,641,488 + +1.2
5,641,488 + +2.1
5,641,488 + -0.4
5,641,488 + -0.8
5,641,489 - -0.8
5,641,533 + +1.1
5,641,534 - -0.4
5,641,534 - +0.1
5,641,609 + -0.1
5,641,609 + -0.0
5,641,610 - -0.1
5,641,610 - -2.0
5,641,610 - -1.8
5,641,610 - +0.6
5,641,679 - Pf6N2E2_4891 0.19 -0.4
5,641,679 - Pf6N2E2_4891 0.19 -0.2
5,641,765 + Pf6N2E2_4891 0.37 +0.3
5,641,765 + Pf6N2E2_4891 0.37 +0.6
5,641,765 + Pf6N2E2_4891 0.37 +0.6
5,641,765 + Pf6N2E2_4891 0.37 +1.0
5,641,765 + Pf6N2E2_4891 0.37 +1.8
5,641,765 + Pf6N2E2_4891 0.37 +0.9
5,641,765 + Pf6N2E2_4891 0.37 +0.3
5,641,766 - Pf6N2E2_4891 0.37 -1.0
5,641,766 - Pf6N2E2_4891 0.37 -0.3
5,641,766 - Pf6N2E2_4891 0.37 +1.6
5,641,766 - Pf6N2E2_4891 0.37 +0.3
5,641,766 - Pf6N2E2_4891 0.37 +1.3
5,641,766 - Pf6N2E2_4891 0.37 +1.6
5,641,769 + Pf6N2E2_4891 0.38 +0.2
5,641,769 + Pf6N2E2_4891 0.38 +0.9
5,641,769 + Pf6N2E2_4891 0.38 -1.1
5,641,770 - Pf6N2E2_4891 0.38 +0.1
5,641,770 - Pf6N2E2_4891 0.38 +0.2
5,641,890 + Pf6N2E2_4891 0.63 -0.6
5,641,891 - Pf6N2E2_4891 0.63 +1.1
5,641,954 + Pf6N2E2_4891 0.77 +0.0
5,641,955 - Pf6N2E2_4891 0.77 -1.9
5,642,025 + -0.5
5,642,026 - +1.5
5,642,026 - -0.3
5,642,075 + -1.0
5,642,075 + +0.1
5,642,076 - +0.1
5,642,076 - -0.5
5,642,076 - -1.7
5,642,076 - +0.1
5,642,076 - -0.7
5,642,107 + +0.5
5,642,107 + +1.8
5,642,154 + +0.0
5,642,154 + +0.9
5,642,242 - -0.6
5,642,248 - +0.4
5,642,258 + -0.3
5,642,258 + +0.3
5,642,258 + -0.2
5,642,259 - -0.9
5,642,259 - +1.2
5,642,259 - +0.5
5,642,259 - -0.1
5,642,264 + -0.3
5,642,265 - +1.6
5,642,265 - +0.5
5,642,267 + -2.6
5,642,268 - +0.3
5,642,268 - +0.2
5,642,335 + +1.2
5,642,335 + -0.7
5,642,336 - +1.0
5,642,353 + -0.5
5,642,365 - -0.1
5,642,728 + Pf6N2E2_4892 0.45 -0.8
5,642,729 - Pf6N2E2_4892 0.45 -0.1
5,642,749 + Pf6N2E2_4892 0.47 -0.7
5,642,749 + Pf6N2E2_4892 0.47 +0.1
5,642,749 + Pf6N2E2_4892 0.47 +0.4
5,642,750 - Pf6N2E2_4892 0.48 +1.6
5,642,750 - Pf6N2E2_4892 0.48 -0.7
5,642,750 - Pf6N2E2_4892 0.48 -0.5
5,642,786 - Pf6N2E2_4892 0.52 -0.5
5,642,815 + Pf6N2E2_4892 0.55 -1.2
5,642,821 + Pf6N2E2_4892 0.56 +1.6
5,642,822 - Pf6N2E2_4892 0.56 +0.1
5,642,930 - Pf6N2E2_4892 0.69 -0.7
5,642,930 - Pf6N2E2_4892 0.69 -1.2
5,642,971 + Pf6N2E2_4892 0.73 -0.2
5,642,972 - Pf6N2E2_4892 0.74 +0.3

Or see this region's nucleotide sequence