Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4710

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4709 and Pf6N2E2_4710 overlap by 38 nucleotidesPf6N2E2_4710 and Pf6N2E2_4711 overlap by 27 nucleotides Pf6N2E2_4709 - Cholesterol oxidase (EC 1.1.3.6), at 5,441,961 to 5,445,413 _4709 Pf6N2E2_4710 - hypothetical protein, at 5,445,376 to 5,445,594 _4710 Pf6N2E2_4711 - FIG00506946: hypothetical protein, at 5,445,568 to 5,447,436 _4711 Position (kb) 5445 5446Strain fitness (log2 ratio) -2 -1 0 1at 5444.511 kb on - strand, within Pf6N2E2_4709at 5444.511 kb on - strand, within Pf6N2E2_4709at 5444.551 kb on - strand, within Pf6N2E2_4709at 5444.568 kb on + strand, within Pf6N2E2_4709at 5444.568 kb on + strand, within Pf6N2E2_4709at 5444.569 kb on - strand, within Pf6N2E2_4709at 5444.880 kb on - strand, within Pf6N2E2_4709at 5444.934 kb on + strand, within Pf6N2E2_4709at 5444.979 kb on + strand, within Pf6N2E2_4709at 5444.979 kb on + strand, within Pf6N2E2_4709at 5445.018 kb on + strand, within Pf6N2E2_4709at 5445.018 kb on + strand, within Pf6N2E2_4709at 5445.018 kb on + strand, within Pf6N2E2_4709at 5445.018 kb on + strand, within Pf6N2E2_4709at 5445.018 kb on + strand, within Pf6N2E2_4709at 5445.018 kb on + strand, within Pf6N2E2_4709at 5445.019 kb on - strand, within Pf6N2E2_4709at 5445.019 kb on - strand, within Pf6N2E2_4709at 5445.019 kb on - strand, within Pf6N2E2_4709at 5445.019 kb on - strand, within Pf6N2E2_4709at 5445.019 kb on - strand, within Pf6N2E2_4709at 5445.019 kb on - strand, within Pf6N2E2_4709at 5445.019 kb on - strand, within Pf6N2E2_4709at 5445.019 kb on - strand, within Pf6N2E2_4709at 5445.028 kb on + strand, within Pf6N2E2_4709at 5445.028 kb on + strand, within Pf6N2E2_4709at 5445.168 kb on + strandat 5445.168 kb on + strandat 5445.168 kb on + strandat 5445.169 kb on - strandat 5445.169 kb on - strandat 5445.234 kb on + strandat 5445.234 kb on + strandat 5445.235 kb on - strandat 5445.235 kb on - strandat 5445.235 kb on - strandat 5445.261 kb on + strandat 5445.261 kb on + strandat 5445.261 kb on + strandat 5445.262 kb on - strandat 5445.262 kb on - strandat 5445.262 kb on - strandat 5445.279 kb on - strandat 5445.552 kb on + strand, within Pf6N2E2_4710at 5445.552 kb on + strand, within Pf6N2E2_4710at 5445.553 kb on - strand, within Pf6N2E2_4710at 5445.577 kb on + strandat 5445.577 kb on + strandat 5445.577 kb on + strandat 5445.578 kb on - strandat 5445.578 kb on - strandat 5445.578 kb on - strandat 5445.751 kb on + strandat 5445.751 kb on + strandat 5445.751 kb on + strandat 5445.751 kb on + strandat 5445.751 kb on + strandat 5445.752 kb on - strandat 5445.752 kb on - strandat 5445.752 kb on - strandat 5445.841 kb on + strand, within Pf6N2E2_4711at 5445.842 kb on - strand, within Pf6N2E2_4711at 5445.842 kb on - strand, within Pf6N2E2_4711at 5445.931 kb on + strand, within Pf6N2E2_4711at 5445.931 kb on + strand, within Pf6N2E2_4711at 5445.931 kb on + strand, within Pf6N2E2_4711at 5446.091 kb on - strand, within Pf6N2E2_4711at 5446.145 kb on - strand, within Pf6N2E2_4711at 5446.151 kb on - strand, within Pf6N2E2_4711at 5446.151 kb on - strand, within Pf6N2E2_4711at 5446.151 kb on - strand, within Pf6N2E2_4711at 5446.190 kb on - strand, within Pf6N2E2_4711at 5446.190 kb on - strand, within Pf6N2E2_4711at 5446.192 kb on + strand, within Pf6N2E2_4711at 5446.192 kb on + strand, within Pf6N2E2_4711at 5446.192 kb on + strand, within Pf6N2E2_4711at 5446.192 kb on + strand, within Pf6N2E2_4711at 5446.193 kb on - strand, within Pf6N2E2_4711at 5446.193 kb on - strand, within Pf6N2E2_4711at 5446.366 kb on + strand, within Pf6N2E2_4711at 5446.453 kb on + strand, within Pf6N2E2_4711at 5446.454 kb on - strand, within Pf6N2E2_4711at 5446.454 kb on - strand, within Pf6N2E2_4711at 5446.543 kb on + strand, within Pf6N2E2_4711at 5446.544 kb on - strand, within Pf6N2E2_4711at 5446.544 kb on - strand, within Pf6N2E2_4711at 5446.544 kb on - strand, within Pf6N2E2_4711at 5446.544 kb on - strand, within Pf6N2E2_4711at 5446.544 kb on - strand, within Pf6N2E2_4711

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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5,444,511 - Pf6N2E2_4709 0.74 -0.5
5,444,511 - Pf6N2E2_4709 0.74 +0.3
5,444,551 - Pf6N2E2_4709 0.75 -0.2
5,444,568 + Pf6N2E2_4709 0.75 +0.4
5,444,568 + Pf6N2E2_4709 0.75 +0.0
5,444,569 - Pf6N2E2_4709 0.76 -1.2
5,444,880 - Pf6N2E2_4709 0.85 -0.3
5,444,934 + Pf6N2E2_4709 0.86 +0.2
5,444,979 + Pf6N2E2_4709 0.87 -0.1
5,444,979 + Pf6N2E2_4709 0.87 -0.1
5,445,018 + Pf6N2E2_4709 0.89 +1.0
5,445,018 + Pf6N2E2_4709 0.89 -1.7
5,445,018 + Pf6N2E2_4709 0.89 +1.2
5,445,018 + Pf6N2E2_4709 0.89 +0.3
5,445,018 + Pf6N2E2_4709 0.89 -0.9
5,445,018 + Pf6N2E2_4709 0.89 -0.5
5,445,019 - Pf6N2E2_4709 0.89 +1.4
5,445,019 - Pf6N2E2_4709 0.89 +0.4
5,445,019 - Pf6N2E2_4709 0.89 +0.4
5,445,019 - Pf6N2E2_4709 0.89 +0.9
5,445,019 - Pf6N2E2_4709 0.89 +0.4
5,445,019 - Pf6N2E2_4709 0.89 -0.1
5,445,019 - Pf6N2E2_4709 0.89 +1.2
5,445,019 - Pf6N2E2_4709 0.89 -0.7
5,445,028 + Pf6N2E2_4709 0.89 +0.9
5,445,028 + Pf6N2E2_4709 0.89 -0.2
5,445,168 + +0.2
5,445,168 + +0.7
5,445,168 + -0.1
5,445,169 - -0.0
5,445,169 - -0.2
5,445,234 + -0.1
5,445,234 + +1.5
5,445,235 - +0.6
5,445,235 - +0.0
5,445,235 - +0.3
5,445,261 + -0.1
5,445,261 + -0.1
5,445,261 + +1.5
5,445,262 - -0.2
5,445,262 - +0.5
5,445,262 - +0.1
5,445,279 - +0.1
5,445,552 + Pf6N2E2_4710 0.80 -0.1
5,445,552 + Pf6N2E2_4710 0.80 -2.0
5,445,553 - Pf6N2E2_4710 0.81 -1.5
5,445,577 + +0.4
5,445,577 + -0.2
5,445,577 + -1.8
5,445,578 - -0.1
5,445,578 - +0.5
5,445,578 - +0.6
5,445,751 + +0.1
5,445,751 + +1.0
5,445,751 + -0.2
5,445,751 + +0.1
5,445,751 + -0.7
5,445,752 - -0.3
5,445,752 - -0.6
5,445,752 - -0.3
5,445,841 + Pf6N2E2_4711 0.15 -0.2
5,445,842 - Pf6N2E2_4711 0.15 +0.0
5,445,842 - Pf6N2E2_4711 0.15 -1.1
5,445,931 + Pf6N2E2_4711 0.19 -0.5
5,445,931 + Pf6N2E2_4711 0.19 -0.1
5,445,931 + Pf6N2E2_4711 0.19 +0.0
5,446,091 - Pf6N2E2_4711 0.28 -0.3
5,446,145 - Pf6N2E2_4711 0.31 +0.1
5,446,151 - Pf6N2E2_4711 0.31 -0.3
5,446,151 - Pf6N2E2_4711 0.31 -0.6
5,446,151 - Pf6N2E2_4711 0.31 +0.8
5,446,190 - Pf6N2E2_4711 0.33 -0.8
5,446,190 - Pf6N2E2_4711 0.33 -0.8
5,446,192 + Pf6N2E2_4711 0.33 +0.8
5,446,192 + Pf6N2E2_4711 0.33 +0.9
5,446,192 + Pf6N2E2_4711 0.33 +0.6
5,446,192 + Pf6N2E2_4711 0.33 +0.4
5,446,193 - Pf6N2E2_4711 0.33 -0.6
5,446,193 - Pf6N2E2_4711 0.33 +0.4
5,446,366 + Pf6N2E2_4711 0.43 +0.3
5,446,453 + Pf6N2E2_4711 0.47 +0.3
5,446,454 - Pf6N2E2_4711 0.47 +0.1
5,446,454 - Pf6N2E2_4711 0.47 -0.7
5,446,543 + Pf6N2E2_4711 0.52 +0.9
5,446,544 - Pf6N2E2_4711 0.52 +0.2
5,446,544 - Pf6N2E2_4711 0.52 -0.6
5,446,544 - Pf6N2E2_4711 0.52 +0.6
5,446,544 - Pf6N2E2_4711 0.52 +0.0
5,446,544 - Pf6N2E2_4711 0.52 +0.2

Or see this region's nucleotide sequence