Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4498 and Pf6N2E2_4499 are separated by 120 nucleotides Pf6N2E2_4499 and Pf6N2E2_4500 overlap by 11 nucleotides Pf6N2E2_4500 and Pf6N2E2_4501 are separated by 438 nucleotides
Pf6N2E2_4498 - Outer membrane porin, OprD family, at 5,230,894 to 5,232,216
_4498
Pf6N2E2_4499 - protein of unknown function DUF86, at 5,232,337 to 5,232,765
_4499
Pf6N2E2_4500 - hypothetical protein, at 5,232,755 to 5,232,916
_4500
Pf6N2E2_4501 - Alkyl hydroperoxide reductase subunit C-like protein, at 5,233,355 to 5,234,122
_4501
Position (kb) 5232
5233 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5231.446 kb on - strand, within Pf6N2E2_4498 at 5231.527 kb on + strand, within Pf6N2E2_4498 at 5231.528 kb on - strand, within Pf6N2E2_4498 at 5231.528 kb on - strand, within Pf6N2E2_4498 at 5231.528 kb on - strand, within Pf6N2E2_4498 at 5231.528 kb on - strand, within Pf6N2E2_4498 at 5231.528 kb on - strand, within Pf6N2E2_4498 at 5231.528 kb on - strand, within Pf6N2E2_4498 at 5231.542 kb on + strand, within Pf6N2E2_4498 at 5231.542 kb on + strand, within Pf6N2E2_4498 at 5231.575 kb on + strand, within Pf6N2E2_4498 at 5231.575 kb on + strand, within Pf6N2E2_4498 at 5231.575 kb on + strand, within Pf6N2E2_4498 at 5231.575 kb on + strand, within Pf6N2E2_4498 at 5231.575 kb on + strand, within Pf6N2E2_4498 at 5231.575 kb on + strand, within Pf6N2E2_4498 at 5231.575 kb on + strand, within Pf6N2E2_4498 at 5231.576 kb on - strand, within Pf6N2E2_4498 at 5231.576 kb on - strand, within Pf6N2E2_4498 at 5231.576 kb on - strand, within Pf6N2E2_4498 at 5231.578 kb on + strand, within Pf6N2E2_4498 at 5231.578 kb on + strand, within Pf6N2E2_4498 at 5231.579 kb on - strand, within Pf6N2E2_4498 at 5231.579 kb on - strand, within Pf6N2E2_4498 at 5231.599 kb on + strand, within Pf6N2E2_4498 at 5231.599 kb on + strand, within Pf6N2E2_4498 at 5231.599 kb on + strand, within Pf6N2E2_4498 at 5231.599 kb on + strand, within Pf6N2E2_4498 at 5231.599 kb on + strand, within Pf6N2E2_4498 at 5231.599 kb on + strand, within Pf6N2E2_4498 at 5231.599 kb on + strand, within Pf6N2E2_4498 at 5231.600 kb on - strand, within Pf6N2E2_4498 at 5231.600 kb on - strand, within Pf6N2E2_4498 at 5231.600 kb on - strand, within Pf6N2E2_4498 at 5231.600 kb on - strand, within Pf6N2E2_4498 at 5231.600 kb on - strand, within Pf6N2E2_4498 at 5231.600 kb on - strand, within Pf6N2E2_4498 at 5231.651 kb on + strand, within Pf6N2E2_4498 at 5231.651 kb on + strand, within Pf6N2E2_4498 at 5231.651 kb on + strand, within Pf6N2E2_4498 at 5231.652 kb on - strand, within Pf6N2E2_4498 at 5231.671 kb on + strand, within Pf6N2E2_4498 at 5231.672 kb on - strand, within Pf6N2E2_4498 at 5231.716 kb on + strand, within Pf6N2E2_4498 at 5231.716 kb on + strand, within Pf6N2E2_4498 at 5231.716 kb on + strand, within Pf6N2E2_4498 at 5231.716 kb on + strand, within Pf6N2E2_4498 at 5231.716 kb on + strand, within Pf6N2E2_4498 at 5231.716 kb on + strand, within Pf6N2E2_4498 at 5231.716 kb on + strand, within Pf6N2E2_4498 at 5231.716 kb on + strand, within Pf6N2E2_4498 at 5231.717 kb on - strand, within Pf6N2E2_4498 at 5231.717 kb on - strand, within Pf6N2E2_4498 at 5231.719 kb on + strand, within Pf6N2E2_4498 at 5231.719 kb on + strand, within Pf6N2E2_4498 at 5231.719 kb on + strand, within Pf6N2E2_4498 at 5231.719 kb on + strand, within Pf6N2E2_4498 at 5231.719 kb on + strand, within Pf6N2E2_4498 at 5231.719 kb on + strand, within Pf6N2E2_4498 at 5231.720 kb on - strand, within Pf6N2E2_4498 at 5231.720 kb on - strand, within Pf6N2E2_4498 at 5231.720 kb on - strand, within Pf6N2E2_4498 at 5231.720 kb on - strand, within Pf6N2E2_4498 at 5231.720 kb on - strand, within Pf6N2E2_4498 at 5231.720 kb on - strand, within Pf6N2E2_4498 at 5231.720 kb on - strand, within Pf6N2E2_4498 at 5231.731 kb on + strand, within Pf6N2E2_4498 at 5231.731 kb on + strand, within Pf6N2E2_4498 at 5231.777 kb on - strand, within Pf6N2E2_4498 at 5231.891 kb on - strand, within Pf6N2E2_4498 at 5231.891 kb on - strand, within Pf6N2E2_4498 at 5231.891 kb on - strand, within Pf6N2E2_4498 at 5231.940 kb on + strand, within Pf6N2E2_4498 at 5231.940 kb on + strand, within Pf6N2E2_4498 at 5231.940 kb on + strand, within Pf6N2E2_4498 at 5231.940 kb on + strand, within Pf6N2E2_4498 at 5231.940 kb on + strand, within Pf6N2E2_4498 at 5231.941 kb on - strand, within Pf6N2E2_4498 at 5231.941 kb on - strand, within Pf6N2E2_4498 at 5231.941 kb on - strand, within Pf6N2E2_4498 at 5231.941 kb on - strand, within Pf6N2E2_4498 at 5231.956 kb on + strand, within Pf6N2E2_4498 at 5231.962 kb on + strand, within Pf6N2E2_4498 at 5231.962 kb on + strand, within Pf6N2E2_4498 at 5231.963 kb on - strand, within Pf6N2E2_4498 at 5232.082 kb on + strand, within Pf6N2E2_4498 at 5232.082 kb on + strand, within Pf6N2E2_4498 at 5232.082 kb on + strand, within Pf6N2E2_4498 at 5232.083 kb on - strand, within Pf6N2E2_4498 at 5232.136 kb on - strand at 5232.196 kb on + strand at 5232.197 kb on - strand at 5232.197 kb on - strand at 5232.214 kb on + strand at 5232.215 kb on - strand at 5232.293 kb on + strand at 5232.293 kb on + strand at 5232.293 kb on + strand at 5232.294 kb on - strand at 5232.294 kb on - strand at 5232.294 kb on - strand at 5232.294 kb on - strand at 5232.303 kb on + strand at 5232.303 kb on + strand at 5232.310 kb on + strand at 5232.311 kb on - strand at 5232.311 kb on - strand at 5232.338 kb on + strand at 5232.338 kb on + strand at 5232.338 kb on + strand at 5232.339 kb on - strand at 5232.339 kb on - strand at 5232.339 kb on - strand at 5232.339 kb on - strand at 5232.602 kb on - strand, within Pf6N2E2_4499 at 5232.679 kb on - strand, within Pf6N2E2_4499 at 5232.696 kb on - strand, within Pf6N2E2_4499 at 5232.696 kb on - strand, within Pf6N2E2_4499 at 5232.752 kb on - strand at 5232.752 kb on - strand at 5232.752 kb on - strand at 5233.131 kb on - strand at 5233.131 kb on - strand at 5233.131 kb on - strand at 5233.134 kb on - strand at 5233.134 kb on - strand at 5233.134 kb on - strand at 5233.158 kb on - strand at 5233.158 kb on - strand at 5233.190 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 5,231,446 - Pf6N2E2_4498 0.42 +1.0 5,231,527 + Pf6N2E2_4498 0.48 -1.3 5,231,528 - Pf6N2E2_4498 0.48 +0.0 5,231,528 - Pf6N2E2_4498 0.48 -0.2 5,231,528 - Pf6N2E2_4498 0.48 -0.2 5,231,528 - Pf6N2E2_4498 0.48 +0.8 5,231,528 - Pf6N2E2_4498 0.48 -0.2 5,231,528 - Pf6N2E2_4498 0.48 +0.8 5,231,542 + Pf6N2E2_4498 0.49 -1.2 5,231,542 + Pf6N2E2_4498 0.49 +0.8 5,231,575 + Pf6N2E2_4498 0.51 +1.2 5,231,575 + Pf6N2E2_4498 0.51 -0.3 5,231,575 + Pf6N2E2_4498 0.51 -0.2 5,231,575 + Pf6N2E2_4498 0.51 +0.8 5,231,575 + Pf6N2E2_4498 0.51 -0.0 5,231,575 + Pf6N2E2_4498 0.51 +0.9 5,231,575 + Pf6N2E2_4498 0.51 -1.1 5,231,576 - Pf6N2E2_4498 0.52 -0.3 5,231,576 - Pf6N2E2_4498 0.52 -1.8 5,231,576 - Pf6N2E2_4498 0.52 +0.2 5,231,578 + Pf6N2E2_4498 0.52 +0.4 5,231,578 + Pf6N2E2_4498 0.52 -0.9 5,231,579 - Pf6N2E2_4498 0.52 +1.2 5,231,579 - Pf6N2E2_4498 0.52 -1.0 5,231,599 + Pf6N2E2_4498 0.53 +0.1 5,231,599 + Pf6N2E2_4498 0.53 +0.3 5,231,599 + Pf6N2E2_4498 0.53 -0.1 5,231,599 + Pf6N2E2_4498 0.53 +1.0 5,231,599 + Pf6N2E2_4498 0.53 -0.8 5,231,599 + Pf6N2E2_4498 0.53 -1.7 5,231,599 + Pf6N2E2_4498 0.53 +0.8 5,231,600 - Pf6N2E2_4498 0.53 +0.9 5,231,600 - Pf6N2E2_4498 0.53 +0.6 5,231,600 - Pf6N2E2_4498 0.53 -0.6 5,231,600 - Pf6N2E2_4498 0.53 +0.4 5,231,600 - Pf6N2E2_4498 0.53 +0.3 5,231,600 - Pf6N2E2_4498 0.53 +1.2 5,231,651 + Pf6N2E2_4498 0.57 -0.3 5,231,651 + Pf6N2E2_4498 0.57 -0.1 5,231,651 + Pf6N2E2_4498 0.57 +0.0 5,231,652 - Pf6N2E2_4498 0.57 +0.7 5,231,671 + Pf6N2E2_4498 0.59 -0.1 5,231,672 - Pf6N2E2_4498 0.59 -0.4 5,231,716 + Pf6N2E2_4498 0.62 -0.4 5,231,716 + Pf6N2E2_4498 0.62 +1.3 5,231,716 + Pf6N2E2_4498 0.62 +0.4 5,231,716 + Pf6N2E2_4498 0.62 -1.0 5,231,716 + Pf6N2E2_4498 0.62 -1.1 5,231,716 + Pf6N2E2_4498 0.62 -0.1 5,231,716 + Pf6N2E2_4498 0.62 +0.6 5,231,716 + Pf6N2E2_4498 0.62 -0.4 5,231,717 - Pf6N2E2_4498 0.62 +0.2 5,231,717 - Pf6N2E2_4498 0.62 +2.2 5,231,719 + Pf6N2E2_4498 0.62 +1.7 5,231,719 + Pf6N2E2_4498 0.62 -0.2 5,231,719 + Pf6N2E2_4498 0.62 +2.0 5,231,719 + Pf6N2E2_4498 0.62 +0.0 5,231,719 + Pf6N2E2_4498 0.62 +0.4 5,231,719 + Pf6N2E2_4498 0.62 +0.9 5,231,720 - Pf6N2E2_4498 0.62 -0.2 5,231,720 - Pf6N2E2_4498 0.62 +1.3 5,231,720 - Pf6N2E2_4498 0.62 +0.7 5,231,720 - Pf6N2E2_4498 0.62 -0.4 5,231,720 - Pf6N2E2_4498 0.62 -0.7 5,231,720 - Pf6N2E2_4498 0.62 -0.3 5,231,720 - Pf6N2E2_4498 0.62 -0.1 5,231,731 + Pf6N2E2_4498 0.63 -0.2 5,231,731 + Pf6N2E2_4498 0.63 -0.9 5,231,777 - Pf6N2E2_4498 0.67 +0.3 5,231,891 - Pf6N2E2_4498 0.75 +1.2 5,231,891 - Pf6N2E2_4498 0.75 -0.6 5,231,891 - Pf6N2E2_4498 0.75 +0.2 5,231,940 + Pf6N2E2_4498 0.79 -0.2 5,231,940 + Pf6N2E2_4498 0.79 +1.2 5,231,940 + Pf6N2E2_4498 0.79 +0.1 5,231,940 + Pf6N2E2_4498 0.79 +0.2 5,231,940 + Pf6N2E2_4498 0.79 -1.3 5,231,941 - Pf6N2E2_4498 0.79 -1.4 5,231,941 - Pf6N2E2_4498 0.79 +0.5 5,231,941 - Pf6N2E2_4498 0.79 +1.6 5,231,941 - Pf6N2E2_4498 0.79 -0.6 5,231,956 + Pf6N2E2_4498 0.80 -1.7 5,231,962 + Pf6N2E2_4498 0.81 -0.4 5,231,962 + Pf6N2E2_4498 0.81 +0.1 5,231,963 - Pf6N2E2_4498 0.81 -0.0 5,232,082 + Pf6N2E2_4498 0.90 +1.1 5,232,082 + Pf6N2E2_4498 0.90 +0.1 5,232,082 + Pf6N2E2_4498 0.90 +0.3 5,232,083 - Pf6N2E2_4498 0.90 +0.1 5,232,136 - -1.2 5,232,196 + -0.7 5,232,197 - +1.0 5,232,197 - +0.4 5,232,214 + +0.5 5,232,215 - +0.7 5,232,293 + +0.8 5,232,293 + -0.6 5,232,293 + -0.4 5,232,294 - -0.6 5,232,294 - +1.0 5,232,294 - +0.4 5,232,294 - +0.9 5,232,303 + -0.4 5,232,303 + +0.4 5,232,310 + -0.3 5,232,311 - -0.4 5,232,311 - -0.3 5,232,338 + -2.7 5,232,338 + +0.2 5,232,338 + -0.2 5,232,339 - -0.8 5,232,339 - -1.5 5,232,339 - -1.5 5,232,339 - +0.3 5,232,602 - Pf6N2E2_4499 0.62 -0.9 5,232,679 - Pf6N2E2_4499 0.80 +0.6 5,232,696 - Pf6N2E2_4499 0.84 -1.4 5,232,696 - Pf6N2E2_4499 0.84 -1.2 5,232,752 - -0.2 5,232,752 - -0.8 5,232,752 - -0.2 5,233,131 - -2.4 5,233,131 - -3.0 5,233,131 - -2.9 5,233,134 - -3.0 5,233,134 - -3.0 5,233,134 - -3.0 5,233,158 - +0.7 5,233,158 - +0.2 5,233,190 - -0.3
Or see this region's nucleotide sequence