Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4381

Experiment: molybdate 0.25 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4378 and Pf6N2E2_4379 are separated by 473 nucleotidesPf6N2E2_4379 and Pf6N2E2_4380 are separated by 11 nucleotidesPf6N2E2_4380 and Pf6N2E2_4381 are separated by 90 nucleotidesPf6N2E2_4381 and Pf6N2E2_4382 are separated by 165 nucleotidesPf6N2E2_4382 and Pf6N2E2_4383 are separated by 234 nucleotides Pf6N2E2_4378 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 5,106,962 to 5,108,551 _4378 Pf6N2E2_4379 - LSU ribosomal protein L28p, at 5,109,025 to 5,109,222 _4379 Pf6N2E2_4380 - LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent, at 5,109,234 to 5,109,389 _4380 Pf6N2E2_4381 - hypothetical protein, at 5,109,480 to 5,109,698 _4381 Pf6N2E2_4382 - FIG00953403: hypothetical protein, at 5,109,864 to 5,110,226 _4382 Pf6N2E2_4383 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data), at 5,110,461 to 5,111,954 _4383 Position (kb) 5109 5110Strain fitness (log2 ratio) -2 -1 0 1 2at 5108.613 kb on + strandat 5108.613 kb on + strandat 5108.731 kb on + strandat 5108.731 kb on + strandat 5109.565 kb on + strand, within Pf6N2E2_4381at 5109.566 kb on - strand, within Pf6N2E2_4381at 5109.566 kb on - strand, within Pf6N2E2_4381at 5109.655 kb on + strand, within Pf6N2E2_4381at 5109.655 kb on + strand, within Pf6N2E2_4381at 5109.656 kb on - strand, within Pf6N2E2_4381at 5109.656 kb on - strand, within Pf6N2E2_4381at 5109.687 kb on + strandat 5109.698 kb on + strandat 5109.699 kb on - strandat 5109.699 kb on - strandat 5109.699 kb on - strandat 5109.699 kb on - strandat 5109.699 kb on - strandat 5109.714 kb on + strandat 5109.714 kb on + strandat 5109.714 kb on + strandat 5109.715 kb on - strandat 5109.721 kb on - strandat 5109.721 kb on - strandat 5109.779 kb on + strandat 5109.780 kb on - strandat 5109.780 kb on - strandat 5109.785 kb on - strandat 5109.785 kb on - strandat 5109.785 kb on - strandat 5109.785 kb on - strandat 5109.785 kb on - strandat 5109.807 kb on + strandat 5109.807 kb on + strandat 5109.808 kb on - strandat 5109.808 kb on - strandat 5109.808 kb on - strandat 5109.826 kb on + strandat 5109.835 kb on + strandat 5109.836 kb on - strandat 5109.836 kb on - strandat 5109.890 kb on - strandat 5109.890 kb on - strandat 5110.027 kb on + strand, within Pf6N2E2_4382at 5110.027 kb on + strand, within Pf6N2E2_4382at 5110.027 kb on + strand, within Pf6N2E2_4382at 5110.028 kb on - strand, within Pf6N2E2_4382at 5110.028 kb on - strand, within Pf6N2E2_4382at 5110.028 kb on - strand, within Pf6N2E2_4382at 5110.042 kb on + strand, within Pf6N2E2_4382at 5110.042 kb on + strand, within Pf6N2E2_4382at 5110.042 kb on + strand, within Pf6N2E2_4382at 5110.042 kb on + strand, within Pf6N2E2_4382at 5110.043 kb on - strand, within Pf6N2E2_4382at 5110.043 kb on - strand, within Pf6N2E2_4382at 5110.043 kb on - strand, within Pf6N2E2_4382at 5110.043 kb on - strand, within Pf6N2E2_4382at 5110.043 kb on - strand, within Pf6N2E2_4382at 5110.043 kb on - strand, within Pf6N2E2_4382at 5110.043 kb on - strand, within Pf6N2E2_4382at 5110.043 kb on - strand, within Pf6N2E2_4382at 5110.043 kb on - strand, within Pf6N2E2_4382at 5110.078 kb on - strand, within Pf6N2E2_4382at 5110.078 kb on - strand, within Pf6N2E2_4382at 5110.111 kb on + strand, within Pf6N2E2_4382at 5110.112 kb on - strand, within Pf6N2E2_4382at 5110.112 kb on - strand, within Pf6N2E2_4382at 5110.187 kb on + strand, within Pf6N2E2_4382at 5110.266 kb on + strandat 5110.266 kb on + strandat 5110.266 kb on + strandat 5110.267 kb on - strandat 5110.267 kb on - strandat 5110.267 kb on - strandat 5110.267 kb on - strandat 5110.267 kb on - strandat 5110.272 kb on + strandat 5110.273 kb on - strandat 5110.273 kb on - strandat 5110.275 kb on + strandat 5110.275 kb on + strandat 5110.317 kb on + strandat 5110.317 kb on + strandat 5110.318 kb on - strandat 5110.319 kb on + strandat 5110.362 kb on + strandat 5110.362 kb on + strandat 5110.363 kb on - strandat 5110.403 kb on + strandat 5110.403 kb on + strandat 5110.404 kb on - strandat 5110.404 kb on - strandat 5110.404 kb on - strandat 5110.404 kb on - strandat 5110.436 kb on + strandat 5110.436 kb on + strandat 5110.437 kb on - strandat 5110.437 kb on - strandat 5110.437 kb on - strandat 5110.444 kb on - strandat 5110.444 kb on - strandat 5110.542 kb on + strandat 5110.542 kb on + strandat 5110.543 kb on - strandat 5110.543 kb on - strandat 5110.543 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
remove
5,108,613 + -0.8
5,108,613 + -0.5
5,108,731 + -0.0
5,108,731 + +0.4
5,109,565 + Pf6N2E2_4381 0.39 -1.2
5,109,566 - Pf6N2E2_4381 0.39 -1.7
5,109,566 - Pf6N2E2_4381 0.39 -0.8
5,109,655 + Pf6N2E2_4381 0.80 -0.8
5,109,655 + Pf6N2E2_4381 0.80 -0.8
5,109,656 - Pf6N2E2_4381 0.80 -0.4
5,109,656 - Pf6N2E2_4381 0.80 -1.5
5,109,687 + +0.6
5,109,698 + +0.1
5,109,699 - -0.3
5,109,699 - +0.4
5,109,699 - -0.1
5,109,699 - -0.6
5,109,699 - -0.9
5,109,714 + +0.6
5,109,714 + -2.4
5,109,714 + +0.7
5,109,715 - +0.4
5,109,721 - -1.1
5,109,721 - +0.3
5,109,779 + -0.2
5,109,780 - +1.1
5,109,780 - +0.2
5,109,785 - +0.4
5,109,785 - -0.6
5,109,785 - +0.4
5,109,785 - +0.0
5,109,785 - +0.6
5,109,807 + +2.3
5,109,807 + +1.0
5,109,808 - +0.2
5,109,808 - +0.3
5,109,808 - -0.4
5,109,826 + -0.4
5,109,835 + -0.4
5,109,836 - +0.7
5,109,836 - +1.3
5,109,890 - +0.0
5,109,890 - -1.1
5,110,027 + Pf6N2E2_4382 0.45 -2.4
5,110,027 + Pf6N2E2_4382 0.45 +0.3
5,110,027 + Pf6N2E2_4382 0.45 +0.1
5,110,028 - Pf6N2E2_4382 0.45 -1.8
5,110,028 - Pf6N2E2_4382 0.45 -2.6
5,110,028 - Pf6N2E2_4382 0.45 -1.0
5,110,042 + Pf6N2E2_4382 0.49 -0.3
5,110,042 + Pf6N2E2_4382 0.49 -1.3
5,110,042 + Pf6N2E2_4382 0.49 -0.3
5,110,042 + Pf6N2E2_4382 0.49 -0.6
5,110,043 - Pf6N2E2_4382 0.49 +1.5
5,110,043 - Pf6N2E2_4382 0.49 +1.0
5,110,043 - Pf6N2E2_4382 0.49 -0.4
5,110,043 - Pf6N2E2_4382 0.49 -0.9
5,110,043 - Pf6N2E2_4382 0.49 -1.6
5,110,043 - Pf6N2E2_4382 0.49 -1.6
5,110,043 - Pf6N2E2_4382 0.49 -0.4
5,110,043 - Pf6N2E2_4382 0.49 -0.4
5,110,043 - Pf6N2E2_4382 0.49 -0.4
5,110,078 - Pf6N2E2_4382 0.59 +0.4
5,110,078 - Pf6N2E2_4382 0.59 +0.6
5,110,111 + Pf6N2E2_4382 0.68 -1.1
5,110,112 - Pf6N2E2_4382 0.68 -0.4
5,110,112 - Pf6N2E2_4382 0.68 +0.1
5,110,187 + Pf6N2E2_4382 0.89 -0.5
5,110,266 + -0.2
5,110,266 + -1.0
5,110,266 + +0.9
5,110,267 - -0.1
5,110,267 - -0.2
5,110,267 - +0.1
5,110,267 - +2.3
5,110,267 - +0.5
5,110,272 + -1.9
5,110,273 - +0.0
5,110,273 - -0.2
5,110,275 + -0.9
5,110,275 + -0.1
5,110,317 + -0.4
5,110,317 + -0.9
5,110,318 - +1.7
5,110,319 + -0.6
5,110,362 + +0.2
5,110,362 + +0.9
5,110,363 - +0.9
5,110,403 + +0.5
5,110,403 + -0.3
5,110,404 - +0.2
5,110,404 - +1.3
5,110,404 - +2.0
5,110,404 - +1.2
5,110,436 + -1.4
5,110,436 + -0.1
5,110,437 - +0.9
5,110,437 - +0.8
5,110,437 - +1.6
5,110,444 - +1.4
5,110,444 - +0.5
5,110,542 + -0.4
5,110,542 + +0.5
5,110,543 - +0.6
5,110,543 - +0.3
5,110,543 - +0.2

Or see this region's nucleotide sequence