Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4378 and Pf6N2E2_4379 are separated by 473 nucleotides Pf6N2E2_4379 and Pf6N2E2_4380 are separated by 11 nucleotides Pf6N2E2_4380 and Pf6N2E2_4381 are separated by 90 nucleotides Pf6N2E2_4381 and Pf6N2E2_4382 are separated by 165 nucleotides Pf6N2E2_4382 and Pf6N2E2_4383 are separated by 234 nucleotides
Pf6N2E2_4378 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 5,106,962 to 5,108,551
_4378
Pf6N2E2_4379 - LSU ribosomal protein L28p, at 5,109,025 to 5,109,222
_4379
Pf6N2E2_4380 - LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent, at 5,109,234 to 5,109,389
_4380
Pf6N2E2_4381 - hypothetical protein, at 5,109,480 to 5,109,698
_4381
Pf6N2E2_4382 - FIG00953403: hypothetical protein, at 5,109,864 to 5,110,226
_4382
Pf6N2E2_4383 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) , at 5,110,461 to 5,111,954
_4383
Position (kb)
5109
5110 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5108.613 kb on + strand at 5108.613 kb on + strand at 5108.731 kb on + strand at 5108.731 kb on + strand at 5109.565 kb on + strand, within Pf6N2E2_4381 at 5109.566 kb on - strand, within Pf6N2E2_4381 at 5109.566 kb on - strand, within Pf6N2E2_4381 at 5109.655 kb on + strand, within Pf6N2E2_4381 at 5109.655 kb on + strand, within Pf6N2E2_4381 at 5109.656 kb on - strand, within Pf6N2E2_4381 at 5109.656 kb on - strand, within Pf6N2E2_4381 at 5109.687 kb on + strand at 5109.698 kb on + strand at 5109.699 kb on - strand at 5109.699 kb on - strand at 5109.699 kb on - strand at 5109.699 kb on - strand at 5109.699 kb on - strand at 5109.714 kb on + strand at 5109.714 kb on + strand at 5109.714 kb on + strand at 5109.715 kb on - strand at 5109.721 kb on - strand at 5109.721 kb on - strand at 5109.779 kb on + strand at 5109.780 kb on - strand at 5109.780 kb on - strand at 5109.785 kb on - strand at 5109.785 kb on - strand at 5109.785 kb on - strand at 5109.785 kb on - strand at 5109.785 kb on - strand at 5109.807 kb on + strand at 5109.807 kb on + strand at 5109.808 kb on - strand at 5109.808 kb on - strand at 5109.808 kb on - strand at 5109.826 kb on + strand at 5109.835 kb on + strand at 5109.836 kb on - strand at 5109.836 kb on - strand at 5109.890 kb on - strand at 5109.890 kb on - strand at 5110.027 kb on + strand, within Pf6N2E2_4382 at 5110.027 kb on + strand, within Pf6N2E2_4382 at 5110.027 kb on + strand, within Pf6N2E2_4382 at 5110.028 kb on - strand, within Pf6N2E2_4382 at 5110.028 kb on - strand, within Pf6N2E2_4382 at 5110.028 kb on - strand, within Pf6N2E2_4382 at 5110.042 kb on + strand, within Pf6N2E2_4382 at 5110.042 kb on + strand, within Pf6N2E2_4382 at 5110.042 kb on + strand, within Pf6N2E2_4382 at 5110.042 kb on + strand, within Pf6N2E2_4382 at 5110.043 kb on - strand, within Pf6N2E2_4382 at 5110.043 kb on - strand, within Pf6N2E2_4382 at 5110.043 kb on - strand, within Pf6N2E2_4382 at 5110.043 kb on - strand, within Pf6N2E2_4382 at 5110.043 kb on - strand, within Pf6N2E2_4382 at 5110.043 kb on - strand, within Pf6N2E2_4382 at 5110.043 kb on - strand, within Pf6N2E2_4382 at 5110.043 kb on - strand, within Pf6N2E2_4382 at 5110.043 kb on - strand, within Pf6N2E2_4382 at 5110.078 kb on - strand, within Pf6N2E2_4382 at 5110.078 kb on - strand, within Pf6N2E2_4382 at 5110.111 kb on + strand, within Pf6N2E2_4382 at 5110.112 kb on - strand, within Pf6N2E2_4382 at 5110.112 kb on - strand, within Pf6N2E2_4382 at 5110.187 kb on + strand, within Pf6N2E2_4382 at 5110.266 kb on + strand at 5110.266 kb on + strand at 5110.266 kb on + strand at 5110.267 kb on - strand at 5110.267 kb on - strand at 5110.267 kb on - strand at 5110.267 kb on - strand at 5110.267 kb on - strand at 5110.272 kb on + strand at 5110.273 kb on - strand at 5110.273 kb on - strand at 5110.275 kb on + strand at 5110.275 kb on + strand at 5110.317 kb on + strand at 5110.317 kb on + strand at 5110.318 kb on - strand at 5110.319 kb on + strand at 5110.362 kb on + strand at 5110.362 kb on + strand at 5110.363 kb on - strand at 5110.403 kb on + strand at 5110.403 kb on + strand at 5110.404 kb on - strand at 5110.404 kb on - strand at 5110.404 kb on - strand at 5110.404 kb on - strand at 5110.436 kb on + strand at 5110.436 kb on + strand at 5110.437 kb on - strand at 5110.437 kb on - strand at 5110.437 kb on - strand at 5110.444 kb on - strand at 5110.444 kb on - strand at 5110.542 kb on + strand at 5110.542 kb on + strand at 5110.543 kb on - strand at 5110.543 kb on - strand at 5110.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 5,108,613 + -0.8 5,108,613 + -0.5 5,108,731 + -0.0 5,108,731 + +0.4 5,109,565 + Pf6N2E2_4381 0.39 -1.2 5,109,566 - Pf6N2E2_4381 0.39 -1.7 5,109,566 - Pf6N2E2_4381 0.39 -0.8 5,109,655 + Pf6N2E2_4381 0.80 -0.8 5,109,655 + Pf6N2E2_4381 0.80 -0.8 5,109,656 - Pf6N2E2_4381 0.80 -0.4 5,109,656 - Pf6N2E2_4381 0.80 -1.5 5,109,687 + +0.6 5,109,698 + +0.1 5,109,699 - -0.3 5,109,699 - +0.4 5,109,699 - -0.1 5,109,699 - -0.6 5,109,699 - -0.9 5,109,714 + +0.6 5,109,714 + -2.4 5,109,714 + +0.7 5,109,715 - +0.4 5,109,721 - -1.1 5,109,721 - +0.3 5,109,779 + -0.2 5,109,780 - +1.1 5,109,780 - +0.2 5,109,785 - +0.4 5,109,785 - -0.6 5,109,785 - +0.4 5,109,785 - +0.0 5,109,785 - +0.6 5,109,807 + +2.3 5,109,807 + +1.0 5,109,808 - +0.2 5,109,808 - +0.3 5,109,808 - -0.4 5,109,826 + -0.4 5,109,835 + -0.4 5,109,836 - +0.7 5,109,836 - +1.3 5,109,890 - +0.0 5,109,890 - -1.1 5,110,027 + Pf6N2E2_4382 0.45 -2.4 5,110,027 + Pf6N2E2_4382 0.45 +0.3 5,110,027 + Pf6N2E2_4382 0.45 +0.1 5,110,028 - Pf6N2E2_4382 0.45 -1.8 5,110,028 - Pf6N2E2_4382 0.45 -2.6 5,110,028 - Pf6N2E2_4382 0.45 -1.0 5,110,042 + Pf6N2E2_4382 0.49 -0.3 5,110,042 + Pf6N2E2_4382 0.49 -1.3 5,110,042 + Pf6N2E2_4382 0.49 -0.3 5,110,042 + Pf6N2E2_4382 0.49 -0.6 5,110,043 - Pf6N2E2_4382 0.49 +1.5 5,110,043 - Pf6N2E2_4382 0.49 +1.0 5,110,043 - Pf6N2E2_4382 0.49 -0.4 5,110,043 - Pf6N2E2_4382 0.49 -0.9 5,110,043 - Pf6N2E2_4382 0.49 -1.6 5,110,043 - Pf6N2E2_4382 0.49 -1.6 5,110,043 - Pf6N2E2_4382 0.49 -0.4 5,110,043 - Pf6N2E2_4382 0.49 -0.4 5,110,043 - Pf6N2E2_4382 0.49 -0.4 5,110,078 - Pf6N2E2_4382 0.59 +0.4 5,110,078 - Pf6N2E2_4382 0.59 +0.6 5,110,111 + Pf6N2E2_4382 0.68 -1.1 5,110,112 - Pf6N2E2_4382 0.68 -0.4 5,110,112 - Pf6N2E2_4382 0.68 +0.1 5,110,187 + Pf6N2E2_4382 0.89 -0.5 5,110,266 + -0.2 5,110,266 + -1.0 5,110,266 + +0.9 5,110,267 - -0.1 5,110,267 - -0.2 5,110,267 - +0.1 5,110,267 - +2.3 5,110,267 - +0.5 5,110,272 + -1.9 5,110,273 - +0.0 5,110,273 - -0.2 5,110,275 + -0.9 5,110,275 + -0.1 5,110,317 + -0.4 5,110,317 + -0.9 5,110,318 - +1.7 5,110,319 + -0.6 5,110,362 + +0.2 5,110,362 + +0.9 5,110,363 - +0.9 5,110,403 + +0.5 5,110,403 + -0.3 5,110,404 - +0.2 5,110,404 - +1.3 5,110,404 - +2.0 5,110,404 - +1.2 5,110,436 + -1.4 5,110,436 + -0.1 5,110,437 - +0.9 5,110,437 - +0.8 5,110,437 - +1.6 5,110,444 - +1.4 5,110,444 - +0.5 5,110,542 + -0.4 5,110,542 + +0.5 5,110,543 - +0.6 5,110,543 - +0.3 5,110,543 - +0.2
Or see this region's nucleotide sequence