Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4059

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4058 and Pf6N2E2_4059 are separated by 225 nucleotidesPf6N2E2_4059 and Pf6N2E2_4060 are separated by 191 nucleotides Pf6N2E2_4058 - PUTATIVE ZINC PROTEASE PROTEIN, at 4,735,326 to 4,736,345 _4058 Pf6N2E2_4059 - DNA-binding protein HU-alpha, at 4,736,571 to 4,736,846 _4059 Pf6N2E2_4060 - Rubredoxin-NAD(+) reductase (EC 1.18.1.1), at 4,737,038 to 4,738,198 _4060 Position (kb) 4736 4737Strain fitness (log2 ratio) -2 -1 0 1 2at 4735.650 kb on + strand, within Pf6N2E2_4058at 4735.651 kb on - strand, within Pf6N2E2_4058at 4735.653 kb on + strand, within Pf6N2E2_4058at 4735.653 kb on + strand, within Pf6N2E2_4058at 4735.654 kb on - strand, within Pf6N2E2_4058at 4735.654 kb on - strand, within Pf6N2E2_4058at 4735.654 kb on - strand, within Pf6N2E2_4058at 4735.842 kb on + strand, within Pf6N2E2_4058at 4735.842 kb on + strand, within Pf6N2E2_4058at 4735.842 kb on + strand, within Pf6N2E2_4058at 4735.843 kb on - strand, within Pf6N2E2_4058at 4736.016 kb on + strand, within Pf6N2E2_4058at 4736.016 kb on + strand, within Pf6N2E2_4058at 4736.016 kb on + strand, within Pf6N2E2_4058at 4736.017 kb on - strand, within Pf6N2E2_4058at 4736.088 kb on + strand, within Pf6N2E2_4058at 4736.088 kb on + strand, within Pf6N2E2_4058at 4736.089 kb on - strand, within Pf6N2E2_4058at 4736.089 kb on - strand, within Pf6N2E2_4058at 4736.131 kb on - strand, within Pf6N2E2_4058at 4736.145 kb on + strand, within Pf6N2E2_4058at 4736.145 kb on + strand, within Pf6N2E2_4058at 4736.145 kb on + strand, within Pf6N2E2_4058at 4736.146 kb on - strand, within Pf6N2E2_4058at 4736.146 kb on - strand, within Pf6N2E2_4058at 4736.146 kb on - strand, within Pf6N2E2_4058at 4736.187 kb on + strand, within Pf6N2E2_4058at 4736.187 kb on + strand, within Pf6N2E2_4058at 4736.187 kb on + strand, within Pf6N2E2_4058at 4736.188 kb on - strand, within Pf6N2E2_4058at 4736.188 kb on - strand, within Pf6N2E2_4058at 4736.188 kb on - strand, within Pf6N2E2_4058at 4736.188 kb on - strand, within Pf6N2E2_4058at 4736.188 kb on - strand, within Pf6N2E2_4058at 4736.287 kb on + strandat 4736.344 kb on - strandat 4736.519 kb on + strandat 4736.559 kb on + strandat 4736.559 kb on + strandat 4736.559 kb on + strandat 4736.559 kb on + strandat 4736.559 kb on + strandat 4736.560 kb on - strandat 4736.560 kb on - strandat 4736.560 kb on - strandat 4736.560 kb on - strandat 4736.572 kb on + strandat 4736.609 kb on + strand, within Pf6N2E2_4059at 4736.840 kb on + strandat 4736.840 kb on + strandat 4736.841 kb on - strandat 4736.879 kb on + strandat 4736.879 kb on + strandat 4736.879 kb on + strandat 4736.879 kb on + strandat 4736.879 kb on + strandat 4736.879 kb on + strandat 4736.879 kb on + strandat 4736.879 kb on + strandat 4736.879 kb on + strandat 4736.879 kb on + strandat 4736.879 kb on + strandat 4736.879 kb on + strandat 4736.879 kb on + strandat 4736.880 kb on - strandat 4736.880 kb on - strandat 4736.880 kb on - strandat 4736.880 kb on - strandat 4736.880 kb on - strandat 4736.880 kb on - strandat 4736.880 kb on - strandat 4736.880 kb on - strandat 4736.880 kb on - strandat 4736.880 kb on - strandat 4736.928 kb on + strandat 4736.928 kb on + strandat 4736.929 kb on - strandat 4737.035 kb on + strandat 4737.190 kb on + strand, within Pf6N2E2_4060at 4737.190 kb on + strand, within Pf6N2E2_4060at 4737.190 kb on + strand, within Pf6N2E2_4060at 4737.191 kb on - strand, within Pf6N2E2_4060at 4737.258 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.330 kb on + strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.331 kb on - strand, within Pf6N2E2_4060at 4737.375 kb on + strand, within Pf6N2E2_4060at 4737.375 kb on + strand, within Pf6N2E2_4060at 4737.375 kb on + strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.376 kb on - strand, within Pf6N2E2_4060at 4737.614 kb on + strand, within Pf6N2E2_4060at 4737.614 kb on + strand, within Pf6N2E2_4060at 4737.615 kb on - strand, within Pf6N2E2_4060at 4737.687 kb on + strand, within Pf6N2E2_4060at 4737.688 kb on - strand, within Pf6N2E2_4060at 4737.688 kb on - strand, within Pf6N2E2_4060at 4737.688 kb on - strand, within Pf6N2E2_4060at 4737.789 kb on + strand, within Pf6N2E2_4060at 4737.789 kb on + strand, within Pf6N2E2_4060at 4737.789 kb on + strand, within Pf6N2E2_4060at 4737.789 kb on + strand, within Pf6N2E2_4060at 4737.790 kb on - strand, within Pf6N2E2_4060at 4737.790 kb on - strand, within Pf6N2E2_4060at 4737.790 kb on - strand, within Pf6N2E2_4060

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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4,735,650 + Pf6N2E2_4058 0.32 -1.4
4,735,651 - Pf6N2E2_4058 0.32 +0.7
4,735,653 + Pf6N2E2_4058 0.32 -0.9
4,735,653 + Pf6N2E2_4058 0.32 -0.2
4,735,654 - Pf6N2E2_4058 0.32 -0.3
4,735,654 - Pf6N2E2_4058 0.32 -0.2
4,735,654 - Pf6N2E2_4058 0.32 +0.8
4,735,842 + Pf6N2E2_4058 0.51 +0.8
4,735,842 + Pf6N2E2_4058 0.51 +0.8
4,735,842 + Pf6N2E2_4058 0.51 +0.2
4,735,843 - Pf6N2E2_4058 0.51 +0.9
4,736,016 + Pf6N2E2_4058 0.68 -0.7
4,736,016 + Pf6N2E2_4058 0.68 -0.3
4,736,016 + Pf6N2E2_4058 0.68 -1.2
4,736,017 - Pf6N2E2_4058 0.68 +0.5
4,736,088 + Pf6N2E2_4058 0.75 -1.5
4,736,088 + Pf6N2E2_4058 0.75 +1.0
4,736,089 - Pf6N2E2_4058 0.75 -0.5
4,736,089 - Pf6N2E2_4058 0.75 -1.9
4,736,131 - Pf6N2E2_4058 0.79 -0.7
4,736,145 + Pf6N2E2_4058 0.80 -0.1
4,736,145 + Pf6N2E2_4058 0.80 -0.3
4,736,145 + Pf6N2E2_4058 0.80 -0.3
4,736,146 - Pf6N2E2_4058 0.80 +0.1
4,736,146 - Pf6N2E2_4058 0.80 -0.2
4,736,146 - Pf6N2E2_4058 0.80 +0.5
4,736,187 + Pf6N2E2_4058 0.84 +0.8
4,736,187 + Pf6N2E2_4058 0.84 +0.5
4,736,187 + Pf6N2E2_4058 0.84 +0.3
4,736,188 - Pf6N2E2_4058 0.85 -0.3
4,736,188 - Pf6N2E2_4058 0.85 +0.2
4,736,188 - Pf6N2E2_4058 0.85 -0.3
4,736,188 - Pf6N2E2_4058 0.85 +0.1
4,736,188 - Pf6N2E2_4058 0.85 -0.8
4,736,287 + -0.0
4,736,344 - -0.6
4,736,519 + +0.7
4,736,559 + -0.4
4,736,559 + -1.3
4,736,559 + +0.3
4,736,559 + +1.0
4,736,559 + +1.8
4,736,560 - -0.7
4,736,560 - +1.1
4,736,560 - +0.2
4,736,560 - +0.2
4,736,572 + -1.3
4,736,609 + Pf6N2E2_4059 0.14 -0.8
4,736,840 + +0.3
4,736,840 + -0.7
4,736,841 - +1.3
4,736,879 + +0.4
4,736,879 + -1.0
4,736,879 + +0.5
4,736,879 + -1.6
4,736,879 + -1.5
4,736,879 + -0.1
4,736,879 + +0.6
4,736,879 + +0.2
4,736,879 + +0.8
4,736,879 + -1.0
4,736,879 + -0.3
4,736,879 + -0.2
4,736,879 + +1.6
4,736,880 - -0.6
4,736,880 - -0.6
4,736,880 - -0.2
4,736,880 - -0.7
4,736,880 - -0.3
4,736,880 - -0.6
4,736,880 - +0.5
4,736,880 - -0.4
4,736,880 - -0.0
4,736,880 - -0.9
4,736,928 + -0.0
4,736,928 + -0.2
4,736,929 - +0.1
4,737,035 + -2.5
4,737,190 + Pf6N2E2_4060 0.13 +0.9
4,737,190 + Pf6N2E2_4060 0.13 +0.7
4,737,190 + Pf6N2E2_4060 0.13 -0.3
4,737,191 - Pf6N2E2_4060 0.13 -0.6
4,737,258 + Pf6N2E2_4060 0.19 +0.8
4,737,330 + Pf6N2E2_4060 0.25 +0.1
4,737,330 + Pf6N2E2_4060 0.25 +0.2
4,737,330 + Pf6N2E2_4060 0.25 -0.5
4,737,330 + Pf6N2E2_4060 0.25 +0.8
4,737,330 + Pf6N2E2_4060 0.25 +0.2
4,737,330 + Pf6N2E2_4060 0.25 +0.5
4,737,330 + Pf6N2E2_4060 0.25 -0.1
4,737,330 + Pf6N2E2_4060 0.25 +0.1
4,737,330 + Pf6N2E2_4060 0.25 -1.3
4,737,330 + Pf6N2E2_4060 0.25 +0.2
4,737,330 + Pf6N2E2_4060 0.25 -0.2
4,737,331 - Pf6N2E2_4060 0.25 -1.7
4,737,331 - Pf6N2E2_4060 0.25 +0.3
4,737,331 - Pf6N2E2_4060 0.25 -0.1
4,737,331 - Pf6N2E2_4060 0.25 +0.2
4,737,331 - Pf6N2E2_4060 0.25 -0.7
4,737,331 - Pf6N2E2_4060 0.25 +1.6
4,737,331 - Pf6N2E2_4060 0.25 +0.7
4,737,331 - Pf6N2E2_4060 0.25 +1.0
4,737,331 - Pf6N2E2_4060 0.25 -0.3
4,737,331 - Pf6N2E2_4060 0.25 +0.5
4,737,331 - Pf6N2E2_4060 0.25 +2.3
4,737,331 - Pf6N2E2_4060 0.25 +0.5
4,737,331 - Pf6N2E2_4060 0.25 -0.1
4,737,375 + Pf6N2E2_4060 0.29 -0.1
4,737,375 + Pf6N2E2_4060 0.29 +0.7
4,737,375 + Pf6N2E2_4060 0.29 +1.7
4,737,376 - Pf6N2E2_4060 0.29 +0.9
4,737,376 - Pf6N2E2_4060 0.29 -1.3
4,737,376 - Pf6N2E2_4060 0.29 +0.1
4,737,376 - Pf6N2E2_4060 0.29 -0.3
4,737,376 - Pf6N2E2_4060 0.29 -0.9
4,737,376 - Pf6N2E2_4060 0.29 -1.3
4,737,376 - Pf6N2E2_4060 0.29 -0.8
4,737,614 + Pf6N2E2_4060 0.50 -0.1
4,737,614 + Pf6N2E2_4060 0.50 +0.4
4,737,615 - Pf6N2E2_4060 0.50 -0.5
4,737,687 + Pf6N2E2_4060 0.56 +0.1
4,737,688 - Pf6N2E2_4060 0.56 -1.2
4,737,688 - Pf6N2E2_4060 0.56 +0.8
4,737,688 - Pf6N2E2_4060 0.56 +0.6
4,737,789 + Pf6N2E2_4060 0.65 -0.2
4,737,789 + Pf6N2E2_4060 0.65 -0.4
4,737,789 + Pf6N2E2_4060 0.65 +0.3
4,737,789 + Pf6N2E2_4060 0.65 -0.2
4,737,790 - Pf6N2E2_4060 0.65 -0.1
4,737,790 - Pf6N2E2_4060 0.65 -0.3
4,737,790 - Pf6N2E2_4060 0.65 -0.1

Or see this region's nucleotide sequence