Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3783 and Pf6N2E2_3784 are separated by 24 nucleotides Pf6N2E2_3784 and Pf6N2E2_3785 are separated by 10 nucleotides Pf6N2E2_3785 and Pf6N2E2_3786 overlap by 4 nucleotides Pf6N2E2_3786 and Pf6N2E2_3787 overlap by 4 nucleotides Pf6N2E2_3787 and Pf6N2E2_3788 are separated by 159 nucleotides
Pf6N2E2_3783 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) , at 4,405,909 to 4,406,241
_3783
Pf6N2E2_3784 - Twin-arginine translocation protein TatA, at 4,406,266 to 4,406,553
_3784
Pf6N2E2_3785 - Twin-arginine translocation protein TatB, at 4,406,564 to 4,406,986
_3785
Pf6N2E2_3786 - Twin-arginine translocation protein TatC, at 4,406,983 to 4,407,780
_3786
Pf6N2E2_3787 - Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-), at 4,407,777 to 4,408,484
_3787
Pf6N2E2_3788 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 4,408,644 to 4,410,560
_3788
Position (kb)
4406
4407
4408 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4406.101 kb on + strand, within Pf6N2E2_3783 at 4406.101 kb on + strand, within Pf6N2E2_3783 at 4406.101 kb on + strand, within Pf6N2E2_3783 at 4406.101 kb on + strand, within Pf6N2E2_3783 at 4406.101 kb on + strand, within Pf6N2E2_3783 at 4406.102 kb on - strand, within Pf6N2E2_3783 at 4406.271 kb on + strand at 4406.562 kb on + strand at 4406.562 kb on + strand at 4406.562 kb on + strand at 4406.764 kb on + strand, within Pf6N2E2_3785 at 4406.764 kb on + strand, within Pf6N2E2_3785 at 4406.764 kb on + strand, within Pf6N2E2_3785 at 4406.764 kb on + strand, within Pf6N2E2_3785 at 4406.764 kb on + strand, within Pf6N2E2_3785 at 4406.764 kb on + strand, within Pf6N2E2_3785 at 4406.765 kb on - strand, within Pf6N2E2_3785 at 4406.928 kb on + strand, within Pf6N2E2_3785 at 4406.928 kb on + strand, within Pf6N2E2_3785 at 4406.928 kb on + strand, within Pf6N2E2_3785 at 4406.928 kb on + strand, within Pf6N2E2_3785 at 4406.928 kb on + strand, within Pf6N2E2_3785 at 4406.928 kb on + strand, within Pf6N2E2_3785 at 4406.928 kb on + strand, within Pf6N2E2_3785 at 4406.962 kb on + strand at 4406.962 kb on + strand at 4406.962 kb on + strand at 4407.292 kb on + strand, within Pf6N2E2_3786 at 4407.370 kb on + strand, within Pf6N2E2_3786 at 4407.370 kb on + strand, within Pf6N2E2_3786 at 4407.373 kb on + strand, within Pf6N2E2_3786 at 4407.454 kb on + strand, within Pf6N2E2_3786 at 4407.454 kb on + strand, within Pf6N2E2_3786 at 4407.556 kb on + strand, within Pf6N2E2_3786 at 4407.577 kb on + strand, within Pf6N2E2_3786 at 4407.577 kb on + strand, within Pf6N2E2_3786 at 4407.577 kb on + strand, within Pf6N2E2_3786 at 4408.491 kb on + strand at 4408.491 kb on + strand at 4408.491 kb on + strand at 4408.491 kb on + strand at 4408.491 kb on + strand at 4408.491 kb on + strand at 4408.492 kb on - strand at 4408.492 kb on - strand at 4408.558 kb on - strand at 4408.576 kb on + strand at 4408.577 kb on - strand at 4408.591 kb on + strand at 4408.591 kb on + strand at 4408.591 kb on + strand at 4408.592 kb on - strand at 4408.592 kb on - strand at 4408.611 kb on + strand at 4408.611 kb on + strand at 4408.618 kb on + strand at 4408.619 kb on - strand at 4408.619 kb on - strand at 4408.619 kb on - strand at 4408.619 kb on - strand at 4408.619 kb on - strand at 4408.620 kb on + strand at 4408.621 kb on - strand at 4408.638 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 4,406,101 + Pf6N2E2_3783 0.58 -1.4 4,406,101 + Pf6N2E2_3783 0.58 -1.5 4,406,101 + Pf6N2E2_3783 0.58 -1.6 4,406,101 + Pf6N2E2_3783 0.58 -0.3 4,406,101 + Pf6N2E2_3783 0.58 -1.8 4,406,102 - Pf6N2E2_3783 0.58 +0.7 4,406,271 + -0.5 4,406,562 + +0.9 4,406,562 + -0.2 4,406,562 + +0.0 4,406,764 + Pf6N2E2_3785 0.47 -1.6 4,406,764 + Pf6N2E2_3785 0.47 +0.8 4,406,764 + Pf6N2E2_3785 0.47 -1.7 4,406,764 + Pf6N2E2_3785 0.47 +0.4 4,406,764 + Pf6N2E2_3785 0.47 -1.2 4,406,764 + Pf6N2E2_3785 0.47 +0.3 4,406,765 - Pf6N2E2_3785 0.48 +0.7 4,406,928 + Pf6N2E2_3785 0.86 -1.0 4,406,928 + Pf6N2E2_3785 0.86 +0.6 4,406,928 + Pf6N2E2_3785 0.86 -0.3 4,406,928 + Pf6N2E2_3785 0.86 +0.2 4,406,928 + Pf6N2E2_3785 0.86 +0.2 4,406,928 + Pf6N2E2_3785 0.86 +0.3 4,406,928 + Pf6N2E2_3785 0.86 -0.2 4,406,962 + +0.0 4,406,962 + -0.5 4,406,962 + +1.0 4,407,292 + Pf6N2E2_3786 0.39 -0.1 4,407,370 + Pf6N2E2_3786 0.48 -0.9 4,407,370 + Pf6N2E2_3786 0.48 +2.3 4,407,373 + Pf6N2E2_3786 0.49 -1.8 4,407,454 + Pf6N2E2_3786 0.59 -1.8 4,407,454 + Pf6N2E2_3786 0.59 -0.1 4,407,556 + Pf6N2E2_3786 0.72 -0.4 4,407,577 + Pf6N2E2_3786 0.74 +1.3 4,407,577 + Pf6N2E2_3786 0.74 -0.7 4,407,577 + Pf6N2E2_3786 0.74 -0.1 4,408,491 + +1.2 4,408,491 + -2.1 4,408,491 + -0.1 4,408,491 + +1.5 4,408,491 + +0.4 4,408,491 + +0.2 4,408,492 - -0.6 4,408,492 - -1.2 4,408,558 - +1.0 4,408,576 + +0.6 4,408,577 - -1.3 4,408,591 + -0.6 4,408,591 + +1.3 4,408,591 + +2.3 4,408,592 - +0.4 4,408,592 - +1.1 4,408,611 + +1.1 4,408,611 + +0.3 4,408,618 + -2.4 4,408,619 - +0.2 4,408,619 - +0.5 4,408,619 - -0.3 4,408,619 - -1.2 4,408,619 - +0.0 4,408,620 + -1.0 4,408,621 - -3.1 4,408,638 - -0.9
Or see this region's nucleotide sequence