Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3373

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3370 and Pf6N2E2_3371 are separated by 77 nucleotidesPf6N2E2_3371 and Pf6N2E2_3372 are separated by 163 nucleotidesPf6N2E2_3372 and Pf6N2E2_3373 overlap by 33 nucleotidesPf6N2E2_3373 and Pf6N2E2_3374 are separated by 59 nucleotidesPf6N2E2_3374 and Pf6N2E2_3375 are separated by 11 nucleotidesPf6N2E2_3375 and Pf6N2E2_3376 are separated by 7 nucleotides Pf6N2E2_3370 - DNA repair protein RecN, at 3,903,544 to 3,905,217 _3370 Pf6N2E2_3371 - Ferric uptake regulation protein FUR, at 3,905,295 to 3,905,699 _3371 Pf6N2E2_3372 - hypothetical protein, at 3,905,863 to 3,906,003 _3372 Pf6N2E2_3373 - Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex, at 3,905,971 to 3,906,324 _3373 Pf6N2E2_3374 - UPF0125 protein yfjF, at 3,906,384 to 3,906,671 _3374 Pf6N2E2_3375 - Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W, at 3,906,683 to 3,907,126 _3375 Pf6N2E2_3376 - Sodium-dependent transporter family protein, at 3,907,134 to 3,908,426 _3376 Position (kb) 3905 3906 3907Strain fitness (log2 ratio) -2 -1 0 1 2at 3905.003 kb on + strand, within Pf6N2E2_3370at 3905.003 kb on + strand, within Pf6N2E2_3370at 3905.003 kb on + strand, within Pf6N2E2_3370at 3905.004 kb on - strand, within Pf6N2E2_3370at 3905.004 kb on - strand, within Pf6N2E2_3370at 3905.004 kb on - strand, within Pf6N2E2_3370at 3905.004 kb on - strand, within Pf6N2E2_3370at 3905.054 kb on + strandat 3905.054 kb on + strandat 3905.054 kb on + strandat 3905.054 kb on + strandat 3905.054 kb on + strandat 3905.054 kb on + strandat 3905.054 kb on + strandat 3905.054 kb on + strandat 3905.054 kb on + strandat 3905.054 kb on + strandat 3905.054 kb on + strandat 3905.054 kb on + strandat 3905.055 kb on - strandat 3905.055 kb on - strandat 3905.055 kb on - strandat 3905.055 kb on - strandat 3905.055 kb on - strandat 3905.055 kb on - strandat 3905.055 kb on - strandat 3905.055 kb on - strandat 3905.055 kb on - strandat 3905.055 kb on - strandat 3905.064 kb on + strandat 3905.064 kb on + strandat 3905.064 kb on + strandat 3905.064 kb on + strandat 3905.064 kb on + strandat 3905.064 kb on + strandat 3905.065 kb on - strandat 3905.065 kb on - strandat 3905.065 kb on - strandat 3905.069 kb on + strandat 3905.069 kb on + strandat 3905.070 kb on - strandat 3905.070 kb on - strandat 3905.126 kb on + strandat 3905.126 kb on + strandat 3905.126 kb on + strandat 3905.276 kb on - strandat 3905.278 kb on + strandat 3905.279 kb on - strandat 3905.279 kb on - strandat 3905.279 kb on - strandat 3905.279 kb on - strandat 3905.296 kb on + strandat 3905.296 kb on + strandat 3905.297 kb on - strandat 3906.131 kb on + strand, within Pf6N2E2_3373at 3906.131 kb on + strand, within Pf6N2E2_3373at 3906.282 kb on - strand, within Pf6N2E2_3373at 3906.310 kb on - strandat 3906.310 kb on - strandat 3906.322 kb on + strandat 3906.322 kb on + strandat 3906.322 kb on + strandat 3906.322 kb on + strandat 3906.323 kb on - strandat 3906.323 kb on - strandat 3906.323 kb on - strandat 3906.362 kb on - strandat 3906.362 kb on - strandat 3906.385 kb on + strandat 3906.676 kb on - strandat 3906.676 kb on - strandat 3907.129 kb on - strandat 3907.129 kb on - strandat 3907.129 kb on - strandat 3907.129 kb on - strandat 3907.129 kb on - strandat 3907.129 kb on - strandat 3907.129 kb on - strandat 3907.129 kb on - strandat 3907.129 kb on - strandat 3907.162 kb on - strandat 3907.162 kb on - strandat 3907.162 kb on - strandat 3907.162 kb on - strandat 3907.187 kb on - strandat 3907.187 kb on - strandat 3907.187 kb on - strandat 3907.187 kb on - strandat 3907.187 kb on - strandat 3907.187 kb on - strandat 3907.219 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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3,905,003 + Pf6N2E2_3370 0.87 -0.6
3,905,003 + Pf6N2E2_3370 0.87 +0.1
3,905,003 + Pf6N2E2_3370 0.87 -1.3
3,905,004 - Pf6N2E2_3370 0.87 -1.6
3,905,004 - Pf6N2E2_3370 0.87 -0.1
3,905,004 - Pf6N2E2_3370 0.87 -2.3
3,905,004 - Pf6N2E2_3370 0.87 -0.4
3,905,054 + +0.7
3,905,054 + -0.9
3,905,054 + -0.1
3,905,054 + +0.5
3,905,054 + +1.4
3,905,054 + -1.1
3,905,054 + -0.8
3,905,054 + -0.8
3,905,054 + -0.4
3,905,054 + -0.4
3,905,054 + -1.9
3,905,054 + +0.6
3,905,055 - +0.6
3,905,055 - -0.1
3,905,055 - +0.1
3,905,055 - -0.1
3,905,055 - -0.1
3,905,055 - +1.0
3,905,055 - +0.1
3,905,055 - -0.8
3,905,055 - -0.6
3,905,055 - -0.8
3,905,064 + -1.2
3,905,064 + +0.0
3,905,064 + +0.6
3,905,064 + +0.8
3,905,064 + -0.5
3,905,064 + -0.5
3,905,065 - +0.0
3,905,065 - +0.0
3,905,065 - +0.2
3,905,069 + +0.2
3,905,069 + +0.7
3,905,070 - -0.0
3,905,070 - -0.1
3,905,126 + -2.0
3,905,126 + -0.1
3,905,126 + -0.8
3,905,276 - -1.8
3,905,278 + +1.1
3,905,279 - +1.2
3,905,279 - +0.8
3,905,279 - -0.8
3,905,279 - +0.4
3,905,296 + -0.8
3,905,296 + +0.8
3,905,297 - +0.8
3,906,131 + Pf6N2E2_3373 0.45 -1.8
3,906,131 + Pf6N2E2_3373 0.45 -0.8
3,906,282 - Pf6N2E2_3373 0.88 -0.2
3,906,310 - +2.0
3,906,310 - -2.2
3,906,322 + +0.4
3,906,322 + +0.4
3,906,322 + -0.1
3,906,322 + +0.4
3,906,323 - +0.8
3,906,323 - -1.1
3,906,323 - -0.1
3,906,362 - -0.1
3,906,362 - -1.0
3,906,385 + +0.9
3,906,676 - +0.8
3,906,676 - -0.3
3,907,129 - -1.6
3,907,129 - +0.4
3,907,129 - +0.2
3,907,129 - -0.4
3,907,129 - -1.8
3,907,129 - -0.2
3,907,129 - +1.4
3,907,129 - +0.5
3,907,129 - -1.4
3,907,162 - +0.8
3,907,162 - +2.0
3,907,162 - -1.1
3,907,162 - +0.8
3,907,187 - -0.0
3,907,187 - +0.5
3,907,187 - +0.2
3,907,187 - +1.2
3,907,187 - +0.9
3,907,187 - +2.0
3,907,219 - -0.5

Or see this region's nucleotide sequence