Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3370 and Pf6N2E2_3371 are separated by 77 nucleotides Pf6N2E2_3371 and Pf6N2E2_3372 are separated by 163 nucleotides Pf6N2E2_3372 and Pf6N2E2_3373 overlap by 33 nucleotides Pf6N2E2_3373 and Pf6N2E2_3374 are separated by 59 nucleotides Pf6N2E2_3374 and Pf6N2E2_3375 are separated by 11 nucleotides Pf6N2E2_3375 and Pf6N2E2_3376 are separated by 7 nucleotides
Pf6N2E2_3370 - DNA repair protein RecN, at 3,903,544 to 3,905,217
_3370
Pf6N2E2_3371 - Ferric uptake regulation protein FUR, at 3,905,295 to 3,905,699
_3371
Pf6N2E2_3372 - hypothetical protein, at 3,905,863 to 3,906,003
_3372
Pf6N2E2_3373 - Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex, at 3,905,971 to 3,906,324
_3373
Pf6N2E2_3374 - UPF0125 protein yfjF, at 3,906,384 to 3,906,671
_3374
Pf6N2E2_3375 - Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W, at 3,906,683 to 3,907,126
_3375
Pf6N2E2_3376 - Sodium-dependent transporter family protein, at 3,907,134 to 3,908,426
_3376
Position (kb)
3905
3906
3907 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3905.003 kb on + strand, within Pf6N2E2_3370 at 3905.003 kb on + strand, within Pf6N2E2_3370 at 3905.003 kb on + strand, within Pf6N2E2_3370 at 3905.004 kb on - strand, within Pf6N2E2_3370 at 3905.004 kb on - strand, within Pf6N2E2_3370 at 3905.004 kb on - strand, within Pf6N2E2_3370 at 3905.004 kb on - strand, within Pf6N2E2_3370 at 3905.054 kb on + strand at 3905.054 kb on + strand at 3905.054 kb on + strand at 3905.054 kb on + strand at 3905.054 kb on + strand at 3905.054 kb on + strand at 3905.054 kb on + strand at 3905.054 kb on + strand at 3905.054 kb on + strand at 3905.054 kb on + strand at 3905.054 kb on + strand at 3905.054 kb on + strand at 3905.055 kb on - strand at 3905.055 kb on - strand at 3905.055 kb on - strand at 3905.055 kb on - strand at 3905.055 kb on - strand at 3905.055 kb on - strand at 3905.055 kb on - strand at 3905.055 kb on - strand at 3905.055 kb on - strand at 3905.055 kb on - strand at 3905.064 kb on + strand at 3905.064 kb on + strand at 3905.064 kb on + strand at 3905.064 kb on + strand at 3905.064 kb on + strand at 3905.064 kb on + strand at 3905.065 kb on - strand at 3905.065 kb on - strand at 3905.065 kb on - strand at 3905.069 kb on + strand at 3905.069 kb on + strand at 3905.070 kb on - strand at 3905.070 kb on - strand at 3905.126 kb on + strand at 3905.126 kb on + strand at 3905.126 kb on + strand at 3905.276 kb on - strand at 3905.278 kb on + strand at 3905.279 kb on - strand at 3905.279 kb on - strand at 3905.279 kb on - strand at 3905.279 kb on - strand at 3905.296 kb on + strand at 3905.296 kb on + strand at 3905.297 kb on - strand at 3906.131 kb on + strand, within Pf6N2E2_3373 at 3906.131 kb on + strand, within Pf6N2E2_3373 at 3906.282 kb on - strand, within Pf6N2E2_3373 at 3906.310 kb on - strand at 3906.310 kb on - strand at 3906.322 kb on + strand at 3906.322 kb on + strand at 3906.322 kb on + strand at 3906.322 kb on + strand at 3906.323 kb on - strand at 3906.323 kb on - strand at 3906.323 kb on - strand at 3906.362 kb on - strand at 3906.362 kb on - strand at 3906.385 kb on + strand at 3906.676 kb on - strand at 3906.676 kb on - strand at 3907.129 kb on - strand at 3907.129 kb on - strand at 3907.129 kb on - strand at 3907.129 kb on - strand at 3907.129 kb on - strand at 3907.129 kb on - strand at 3907.129 kb on - strand at 3907.129 kb on - strand at 3907.129 kb on - strand at 3907.162 kb on - strand at 3907.162 kb on - strand at 3907.162 kb on - strand at 3907.162 kb on - strand at 3907.187 kb on - strand at 3907.187 kb on - strand at 3907.187 kb on - strand at 3907.187 kb on - strand at 3907.187 kb on - strand at 3907.187 kb on - strand at 3907.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 3,905,003 + Pf6N2E2_3370 0.87 -0.6 3,905,003 + Pf6N2E2_3370 0.87 +0.1 3,905,003 + Pf6N2E2_3370 0.87 -1.3 3,905,004 - Pf6N2E2_3370 0.87 -1.6 3,905,004 - Pf6N2E2_3370 0.87 -0.1 3,905,004 - Pf6N2E2_3370 0.87 -2.3 3,905,004 - Pf6N2E2_3370 0.87 -0.4 3,905,054 + +0.7 3,905,054 + -0.9 3,905,054 + -0.1 3,905,054 + +0.5 3,905,054 + +1.4 3,905,054 + -1.1 3,905,054 + -0.8 3,905,054 + -0.8 3,905,054 + -0.4 3,905,054 + -0.4 3,905,054 + -1.9 3,905,054 + +0.6 3,905,055 - +0.6 3,905,055 - -0.1 3,905,055 - +0.1 3,905,055 - -0.1 3,905,055 - -0.1 3,905,055 - +1.0 3,905,055 - +0.1 3,905,055 - -0.8 3,905,055 - -0.6 3,905,055 - -0.8 3,905,064 + -1.2 3,905,064 + +0.0 3,905,064 + +0.6 3,905,064 + +0.8 3,905,064 + -0.5 3,905,064 + -0.5 3,905,065 - +0.0 3,905,065 - +0.0 3,905,065 - +0.2 3,905,069 + +0.2 3,905,069 + +0.7 3,905,070 - -0.0 3,905,070 - -0.1 3,905,126 + -2.0 3,905,126 + -0.1 3,905,126 + -0.8 3,905,276 - -1.8 3,905,278 + +1.1 3,905,279 - +1.2 3,905,279 - +0.8 3,905,279 - -0.8 3,905,279 - +0.4 3,905,296 + -0.8 3,905,296 + +0.8 3,905,297 - +0.8 3,906,131 + Pf6N2E2_3373 0.45 -1.8 3,906,131 + Pf6N2E2_3373 0.45 -0.8 3,906,282 - Pf6N2E2_3373 0.88 -0.2 3,906,310 - +2.0 3,906,310 - -2.2 3,906,322 + +0.4 3,906,322 + +0.4 3,906,322 + -0.1 3,906,322 + +0.4 3,906,323 - +0.8 3,906,323 - -1.1 3,906,323 - -0.1 3,906,362 - -0.1 3,906,362 - -1.0 3,906,385 + +0.9 3,906,676 - +0.8 3,906,676 - -0.3 3,907,129 - -1.6 3,907,129 - +0.4 3,907,129 - +0.2 3,907,129 - -0.4 3,907,129 - -1.8 3,907,129 - -0.2 3,907,129 - +1.4 3,907,129 - +0.5 3,907,129 - -1.4 3,907,162 - +0.8 3,907,162 - +2.0 3,907,162 - -1.1 3,907,162 - +0.8 3,907,187 - -0.0 3,907,187 - +0.5 3,907,187 - +0.2 3,907,187 - +1.2 3,907,187 - +0.9 3,907,187 - +2.0 3,907,219 - -0.5
Or see this region's nucleotide sequence