Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3301

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3300 and Pf6N2E2_3301 are separated by 235 nucleotidesPf6N2E2_3301 and Pf6N2E2_3302 are separated by 251 nucleotidesPf6N2E2_3302 and Pf6N2E2_3303 overlap by 8 nucleotides Pf6N2E2_3300 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 3,809,343 to 3,810,089 _3300 Pf6N2E2_3301 - ABC transporter, ATP-binding protein, at 3,810,325 to 3,812,052 _3301 Pf6N2E2_3302 - Dna binding response regulator PrrA (RegA), at 3,812,304 to 3,812,864 _3302 Pf6N2E2_3303 - Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-), at 3,812,857 to 3,814,119 _3303 Position (kb) 3810 3811 3812 3813Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3809.458 kb on + strand, within Pf6N2E2_3300at 3809.459 kb on - strand, within Pf6N2E2_3300at 3809.494 kb on + strand, within Pf6N2E2_3300at 3809.494 kb on + strand, within Pf6N2E2_3300at 3809.495 kb on - strand, within Pf6N2E2_3300at 3809.976 kb on - strand, within Pf6N2E2_3300at 3810.203 kb on + strandat 3810.203 kb on + strandat 3810.203 kb on + strandat 3810.204 kb on - strandat 3810.204 kb on - strandat 3810.271 kb on - strandat 3810.288 kb on + strandat 3810.288 kb on + strandat 3810.289 kb on - strandat 3810.340 kb on - strandat 3810.340 kb on - strandat 3810.340 kb on - strandat 3810.459 kb on - strandat 3810.459 kb on - strandat 3810.459 kb on - strandat 3810.459 kb on - strandat 3810.509 kb on + strand, within Pf6N2E2_3301at 3810.509 kb on + strand, within Pf6N2E2_3301at 3810.509 kb on + strand, within Pf6N2E2_3301at 3810.510 kb on - strand, within Pf6N2E2_3301at 3810.510 kb on - strand, within Pf6N2E2_3301at 3810.510 kb on - strand, within Pf6N2E2_3301at 3810.510 kb on - strand, within Pf6N2E2_3301at 3810.510 kb on - strand, within Pf6N2E2_3301at 3810.528 kb on - strand, within Pf6N2E2_3301at 3810.528 kb on - strand, within Pf6N2E2_3301at 3810.653 kb on + strand, within Pf6N2E2_3301at 3810.653 kb on + strand, within Pf6N2E2_3301at 3810.653 kb on + strand, within Pf6N2E2_3301at 3810.654 kb on - strand, within Pf6N2E2_3301at 3810.654 kb on - strand, within Pf6N2E2_3301at 3810.654 kb on - strand, within Pf6N2E2_3301at 3810.668 kb on + strand, within Pf6N2E2_3301at 3810.668 kb on + strand, within Pf6N2E2_3301at 3810.673 kb on - strand, within Pf6N2E2_3301at 3810.673 kb on - strand, within Pf6N2E2_3301at 3810.697 kb on + strand, within Pf6N2E2_3301at 3810.697 kb on + strand, within Pf6N2E2_3301at 3810.697 kb on + strand, within Pf6N2E2_3301at 3810.697 kb on + strand, within Pf6N2E2_3301at 3810.698 kb on - strand, within Pf6N2E2_3301at 3810.721 kb on + strand, within Pf6N2E2_3301at 3810.725 kb on + strand, within Pf6N2E2_3301at 3810.725 kb on + strand, within Pf6N2E2_3301at 3810.725 kb on + strand, within Pf6N2E2_3301at 3810.725 kb on + strand, within Pf6N2E2_3301at 3810.726 kb on - strand, within Pf6N2E2_3301at 3810.726 kb on - strand, within Pf6N2E2_3301at 3810.750 kb on - strand, within Pf6N2E2_3301at 3810.750 kb on - strand, within Pf6N2E2_3301at 3810.825 kb on + strand, within Pf6N2E2_3301at 3810.961 kb on + strand, within Pf6N2E2_3301at 3810.961 kb on + strand, within Pf6N2E2_3301at 3810.962 kb on - strand, within Pf6N2E2_3301at 3811.313 kb on + strand, within Pf6N2E2_3301at 3811.314 kb on - strand, within Pf6N2E2_3301at 3811.452 kb on - strand, within Pf6N2E2_3301at 3811.452 kb on - strand, within Pf6N2E2_3301at 3811.452 kb on - strand, within Pf6N2E2_3301at 3811.452 kb on - strand, within Pf6N2E2_3301at 3811.476 kb on - strand, within Pf6N2E2_3301at 3811.490 kb on + strand, within Pf6N2E2_3301at 3811.491 kb on - strand, within Pf6N2E2_3301at 3811.670 kb on + strand, within Pf6N2E2_3301at 3811.670 kb on + strand, within Pf6N2E2_3301at 3811.670 kb on + strand, within Pf6N2E2_3301at 3811.670 kb on + strand, within Pf6N2E2_3301at 3811.670 kb on + strand, within Pf6N2E2_3301at 3811.671 kb on - strand, within Pf6N2E2_3301at 3811.671 kb on - strand, within Pf6N2E2_3301at 3811.671 kb on - strand, within Pf6N2E2_3301at 3811.671 kb on - strand, within Pf6N2E2_3301at 3811.671 kb on - strand, within Pf6N2E2_3301at 3811.671 kb on - strand, within Pf6N2E2_3301at 3811.671 kb on - strand, within Pf6N2E2_3301at 3811.671 kb on - strand, within Pf6N2E2_3301at 3811.671 kb on - strand, within Pf6N2E2_3301at 3811.671 kb on - strand, within Pf6N2E2_3301at 3811.671 kb on - strand, within Pf6N2E2_3301at 3811.671 kb on - strand, within Pf6N2E2_3301at 3811.751 kb on + strand, within Pf6N2E2_3301at 3811.752 kb on - strand, within Pf6N2E2_3301at 3811.752 kb on - strand, within Pf6N2E2_3301at 3811.853 kb on + strand, within Pf6N2E2_3301at 3811.853 kb on + strand, within Pf6N2E2_3301at 3811.853 kb on + strand, within Pf6N2E2_3301at 3811.854 kb on - strand, within Pf6N2E2_3301at 3811.854 kb on - strand, within Pf6N2E2_3301at 3811.854 kb on - strand, within Pf6N2E2_3301at 3811.865 kb on + strand, within Pf6N2E2_3301at 3811.866 kb on - strand, within Pf6N2E2_3301at 3811.866 kb on - strand, within Pf6N2E2_3301at 3811.927 kb on + strandat 3811.928 kb on - strandat 3811.928 kb on - strandat 3811.928 kb on - strandat 3811.967 kb on + strandat 3811.968 kb on - strandat 3812.034 kb on - strandat 3812.056 kb on + strandat 3812.066 kb on + strandat 3812.079 kb on + strandat 3812.079 kb on + strandat 3812.079 kb on + strandat 3812.079 kb on + strandat 3812.079 kb on + strandat 3812.080 kb on - strandat 3812.080 kb on - strandat 3812.080 kb on - strandat 3812.080 kb on - strandat 3812.080 kb on - strandat 3812.080 kb on - strandat 3812.099 kb on - strandat 3812.099 kb on - strandat 3812.099 kb on - strandat 3812.099 kb on - strandat 3812.219 kb on + strandat 3812.219 kb on + strandat 3812.219 kb on + strandat 3812.219 kb on + strandat 3812.219 kb on + strandat 3812.219 kb on + strandat 3812.219 kb on + strandat 3812.219 kb on + strandat 3812.228 kb on + strandat 3812.228 kb on + strandat 3812.228 kb on + strandat 3812.250 kb on + strandat 3812.251 kb on - strandat 3812.251 kb on - strandat 3812.865 kb on - strandat 3813.014 kb on + strand, within Pf6N2E2_3303at 3813.015 kb on - strand, within Pf6N2E2_3303at 3813.015 kb on - strand, within Pf6N2E2_3303at 3813.015 kb on - strand, within Pf6N2E2_3303

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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3,809,458 + Pf6N2E2_3300 0.15 +0.5
3,809,459 - Pf6N2E2_3300 0.16 +0.1
3,809,494 + Pf6N2E2_3300 0.20 +0.4
3,809,494 + Pf6N2E2_3300 0.20 +1.1
3,809,495 - Pf6N2E2_3300 0.20 -0.3
3,809,976 - Pf6N2E2_3300 0.85 +0.1
3,810,203 + +0.0
3,810,203 + -0.0
3,810,203 + +0.2
3,810,204 - -1.6
3,810,204 - +0.8
3,810,271 - -0.2
3,810,288 + -1.1
3,810,288 + +0.1
3,810,289 - -1.6
3,810,340 - +0.4
3,810,340 - +0.0
3,810,340 - -0.4
3,810,459 - -1.8
3,810,459 - -2.9
3,810,459 - -3.6
3,810,459 - -2.9
3,810,509 + Pf6N2E2_3301 0.11 -0.3
3,810,509 + Pf6N2E2_3301 0.11 +0.1
3,810,509 + Pf6N2E2_3301 0.11 -3.3
3,810,510 - Pf6N2E2_3301 0.11 -2.1
3,810,510 - Pf6N2E2_3301 0.11 -0.5
3,810,510 - Pf6N2E2_3301 0.11 -0.5
3,810,510 - Pf6N2E2_3301 0.11 -2.7
3,810,510 - Pf6N2E2_3301 0.11 -2.5
3,810,528 - Pf6N2E2_3301 0.12 -1.3
3,810,528 - Pf6N2E2_3301 0.12 -1.8
3,810,653 + Pf6N2E2_3301 0.19 +0.5
3,810,653 + Pf6N2E2_3301 0.19 -2.4
3,810,653 + Pf6N2E2_3301 0.19 -0.8
3,810,654 - Pf6N2E2_3301 0.19 -2.6
3,810,654 - Pf6N2E2_3301 0.19 -2.4
3,810,654 - Pf6N2E2_3301 0.19 -0.5
3,810,668 + Pf6N2E2_3301 0.20 -1.2
3,810,668 + Pf6N2E2_3301 0.20 -2.1
3,810,673 - Pf6N2E2_3301 0.20 +1.0
3,810,673 - Pf6N2E2_3301 0.20 +0.3
3,810,697 + Pf6N2E2_3301 0.22 -1.1
3,810,697 + Pf6N2E2_3301 0.22 -2.8
3,810,697 + Pf6N2E2_3301 0.22 -2.5
3,810,697 + Pf6N2E2_3301 0.22 -1.2
3,810,698 - Pf6N2E2_3301 0.22 -2.4
3,810,721 + Pf6N2E2_3301 0.23 +0.7
3,810,725 + Pf6N2E2_3301 0.23 -0.9
3,810,725 + Pf6N2E2_3301 0.23 -1.3
3,810,725 + Pf6N2E2_3301 0.23 -2.4
3,810,725 + Pf6N2E2_3301 0.23 -1.4
3,810,726 - Pf6N2E2_3301 0.23 -1.7
3,810,726 - Pf6N2E2_3301 0.23 -2.2
3,810,750 - Pf6N2E2_3301 0.25 -0.5
3,810,750 - Pf6N2E2_3301 0.25 -1.9
3,810,825 + Pf6N2E2_3301 0.29 -1.5
3,810,961 + Pf6N2E2_3301 0.37 -1.5
3,810,961 + Pf6N2E2_3301 0.37 -0.5
3,810,962 - Pf6N2E2_3301 0.37 -1.8
3,811,313 + Pf6N2E2_3301 0.57 +0.2
3,811,314 - Pf6N2E2_3301 0.57 -1.4
3,811,452 - Pf6N2E2_3301 0.65 +0.7
3,811,452 - Pf6N2E2_3301 0.65 -2.4
3,811,452 - Pf6N2E2_3301 0.65 -1.5
3,811,452 - Pf6N2E2_3301 0.65 -3.1
3,811,476 - Pf6N2E2_3301 0.67 -3.3
3,811,490 + Pf6N2E2_3301 0.67 -2.1
3,811,491 - Pf6N2E2_3301 0.67 -2.1
3,811,670 + Pf6N2E2_3301 0.78 -2.8
3,811,670 + Pf6N2E2_3301 0.78 -2.0
3,811,670 + Pf6N2E2_3301 0.78 -1.0
3,811,670 + Pf6N2E2_3301 0.78 -2.6
3,811,670 + Pf6N2E2_3301 0.78 -1.1
3,811,671 - Pf6N2E2_3301 0.78 +0.9
3,811,671 - Pf6N2E2_3301 0.78 -1.3
3,811,671 - Pf6N2E2_3301 0.78 -2.9
3,811,671 - Pf6N2E2_3301 0.78 -0.7
3,811,671 - Pf6N2E2_3301 0.78 -1.7
3,811,671 - Pf6N2E2_3301 0.78 -2.8
3,811,671 - Pf6N2E2_3301 0.78 -1.1
3,811,671 - Pf6N2E2_3301 0.78 -2.3
3,811,671 - Pf6N2E2_3301 0.78 -2.3
3,811,671 - Pf6N2E2_3301 0.78 -0.8
3,811,671 - Pf6N2E2_3301 0.78 -2.2
3,811,671 - Pf6N2E2_3301 0.78 -2.5
3,811,751 + Pf6N2E2_3301 0.83 -1.8
3,811,752 - Pf6N2E2_3301 0.83 -1.4
3,811,752 - Pf6N2E2_3301 0.83 -0.8
3,811,853 + Pf6N2E2_3301 0.88 -1.2
3,811,853 + Pf6N2E2_3301 0.88 -1.9
3,811,853 + Pf6N2E2_3301 0.88 -1.5
3,811,854 - Pf6N2E2_3301 0.88 -0.1
3,811,854 - Pf6N2E2_3301 0.88 -2.5
3,811,854 - Pf6N2E2_3301 0.88 -0.2
3,811,865 + Pf6N2E2_3301 0.89 -1.3
3,811,866 - Pf6N2E2_3301 0.89 -0.5
3,811,866 - Pf6N2E2_3301 0.89 -1.3
3,811,927 + -1.0
3,811,928 - +0.5
3,811,928 - -1.9
3,811,928 - -1.2
3,811,967 + -0.0
3,811,968 - -1.0
3,812,034 - -1.9
3,812,056 + -2.7
3,812,066 + -1.2
3,812,079 + -0.5
3,812,079 + -3.5
3,812,079 + -0.8
3,812,079 + -1.4
3,812,079 + -1.0
3,812,080 - -0.2
3,812,080 - +0.6
3,812,080 - -0.2
3,812,080 - -0.3
3,812,080 - +0.9
3,812,080 - +1.8
3,812,099 - +0.2
3,812,099 - +0.7
3,812,099 - +1.3
3,812,099 - +1.0
3,812,219 + -1.0
3,812,219 + -0.1
3,812,219 + -2.4
3,812,219 + -0.8
3,812,219 + -0.5
3,812,219 + -1.4
3,812,219 + -3.3
3,812,219 + -1.0
3,812,228 + -1.4
3,812,228 + -1.5
3,812,228 + -1.4
3,812,250 + +0.8
3,812,251 - +0.3
3,812,251 - +0.4
3,812,865 - -1.2
3,813,014 + Pf6N2E2_3303 0.12 -0.7
3,813,015 - Pf6N2E2_3303 0.13 +1.2
3,813,015 - Pf6N2E2_3303 0.13 +1.5
3,813,015 - Pf6N2E2_3303 0.13 +1.5

Or see this region's nucleotide sequence