Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3293

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3292 and Pf6N2E2_3293 overlap by 4 nucleotidesPf6N2E2_3293 and Pf6N2E2_3294 are separated by 74 nucleotides Pf6N2E2_3292 - K+-dependent Na+/Ca+ exchanger related-protein, at 3,798,861 to 3,799,913 _3292 Pf6N2E2_3293 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 3,799,910 to 3,800,290 _3293 Pf6N2E2_3294 - hypothetical protein, at 3,800,365 to 3,801,327 _3294 Position (kb) 3799 3800 3801Strain fitness (log2 ratio) -2 -1 0 1 2at 3798.919 kb on + strandat 3798.919 kb on + strandat 3798.919 kb on + strandat 3798.920 kb on - strandat 3799.022 kb on + strand, within Pf6N2E2_3292at 3799.022 kb on + strand, within Pf6N2E2_3292at 3799.670 kb on - strand, within Pf6N2E2_3292at 3799.695 kb on + strand, within Pf6N2E2_3292at 3799.695 kb on + strand, within Pf6N2E2_3292at 3799.696 kb on - strand, within Pf6N2E2_3292at 3799.747 kb on - strand, within Pf6N2E2_3292at 3799.747 kb on - strand, within Pf6N2E2_3292at 3799.747 kb on - strand, within Pf6N2E2_3292at 3799.747 kb on - strand, within Pf6N2E2_3292at 3799.756 kb on - strand, within Pf6N2E2_3292at 3799.762 kb on + strand, within Pf6N2E2_3292at 3799.827 kb on + strandat 3799.827 kb on + strandat 3799.827 kb on + strandat 3799.827 kb on + strandat 3799.827 kb on + strandat 3799.827 kb on + strandat 3799.828 kb on - strandat 3799.828 kb on - strandat 3799.828 kb on - strandat 3799.828 kb on - strandat 3799.828 kb on - strandat 3799.828 kb on - strandat 3800.170 kb on + strand, within Pf6N2E2_3293at 3800.170 kb on + strand, within Pf6N2E2_3293at 3800.171 kb on - strand, within Pf6N2E2_3293at 3800.269 kb on + strandat 3800.269 kb on + strandat 3800.270 kb on - strandat 3800.270 kb on - strandat 3800.270 kb on - strandat 3800.270 kb on - strandat 3800.274 kb on - strandat 3800.288 kb on + strandat 3800.423 kb on + strandat 3800.423 kb on + strandat 3800.424 kb on - strandat 3800.424 kb on - strandat 3800.424 kb on - strandat 3800.516 kb on - strand, within Pf6N2E2_3294at 3800.561 kb on + strand, within Pf6N2E2_3294at 3800.562 kb on - strand, within Pf6N2E2_3294at 3800.565 kb on + strand, within Pf6N2E2_3294at 3800.566 kb on - strand, within Pf6N2E2_3294at 3800.566 kb on - strand, within Pf6N2E2_3294at 3800.566 kb on - strand, within Pf6N2E2_3294at 3800.566 kb on - strand, within Pf6N2E2_3294at 3800.606 kb on + strand, within Pf6N2E2_3294at 3800.606 kb on + strand, within Pf6N2E2_3294at 3800.607 kb on - strand, within Pf6N2E2_3294at 3800.607 kb on - strand, within Pf6N2E2_3294at 3800.607 kb on - strand, within Pf6N2E2_3294at 3800.607 kb on - strand, within Pf6N2E2_3294at 3800.655 kb on + strand, within Pf6N2E2_3294at 3800.655 kb on + strand, within Pf6N2E2_3294at 3800.656 kb on - strand, within Pf6N2E2_3294at 3800.656 kb on - strand, within Pf6N2E2_3294at 3800.656 kb on - strand, within Pf6N2E2_3294at 3800.771 kb on + strand, within Pf6N2E2_3294at 3800.771 kb on + strand, within Pf6N2E2_3294at 3800.772 kb on - strand, within Pf6N2E2_3294at 3800.772 kb on - strand, within Pf6N2E2_3294at 3800.772 kb on - strand, within Pf6N2E2_3294at 3800.772 kb on - strand, within Pf6N2E2_3294at 3800.856 kb on - strand, within Pf6N2E2_3294at 3800.856 kb on - strand, within Pf6N2E2_3294at 3800.858 kb on + strand, within Pf6N2E2_3294at 3800.895 kb on - strand, within Pf6N2E2_3294at 3800.909 kb on + strand, within Pf6N2E2_3294at 3800.909 kb on + strand, within Pf6N2E2_3294at 3800.963 kb on + strand, within Pf6N2E2_3294at 3800.963 kb on + strand, within Pf6N2E2_3294at 3800.963 kb on + strand, within Pf6N2E2_3294at 3800.963 kb on + strand, within Pf6N2E2_3294at 3800.963 kb on + strand, within Pf6N2E2_3294at 3800.964 kb on - strand, within Pf6N2E2_3294at 3801.086 kb on + strand, within Pf6N2E2_3294at 3801.086 kb on + strand, within Pf6N2E2_3294at 3801.087 kb on - strand, within Pf6N2E2_3294at 3801.087 kb on - strand, within Pf6N2E2_3294at 3801.087 kb on - strand, within Pf6N2E2_3294at 3801.087 kb on - strand, within Pf6N2E2_3294at 3801.143 kb on + strand, within Pf6N2E2_3294at 3801.156 kb on + strand, within Pf6N2E2_3294at 3801.156 kb on + strand, within Pf6N2E2_3294at 3801.165 kb on + strand, within Pf6N2E2_3294at 3801.165 kb on + strand, within Pf6N2E2_3294at 3801.165 kb on + strand, within Pf6N2E2_3294

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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3,798,919 + -0.1
3,798,919 + -0.6
3,798,919 + +1.1
3,798,920 - +0.7
3,799,022 + Pf6N2E2_3292 0.15 +0.0
3,799,022 + Pf6N2E2_3292 0.15 +0.3
3,799,670 - Pf6N2E2_3292 0.77 +0.1
3,799,695 + Pf6N2E2_3292 0.79 -0.5
3,799,695 + Pf6N2E2_3292 0.79 -1.2
3,799,696 - Pf6N2E2_3292 0.79 +1.4
3,799,747 - Pf6N2E2_3292 0.84 -0.4
3,799,747 - Pf6N2E2_3292 0.84 -2.1
3,799,747 - Pf6N2E2_3292 0.84 -0.1
3,799,747 - Pf6N2E2_3292 0.84 -2.1
3,799,756 - Pf6N2E2_3292 0.85 -0.8
3,799,762 + Pf6N2E2_3292 0.86 -1.6
3,799,827 + +0.8
3,799,827 + -1.1
3,799,827 + +0.6
3,799,827 + -0.5
3,799,827 + -0.4
3,799,827 + +0.2
3,799,828 - -0.3
3,799,828 - -1.5
3,799,828 - +0.9
3,799,828 - -0.8
3,799,828 - -1.5
3,799,828 - +0.9
3,800,170 + Pf6N2E2_3293 0.68 -0.3
3,800,170 + Pf6N2E2_3293 0.68 -1.2
3,800,171 - Pf6N2E2_3293 0.69 -0.8
3,800,269 + -1.3
3,800,269 + -0.3
3,800,270 - +0.3
3,800,270 - +1.2
3,800,270 - -1.5
3,800,270 - +0.4
3,800,274 - +0.9
3,800,288 + -0.5
3,800,423 + +0.0
3,800,423 + +0.7
3,800,424 - -0.7
3,800,424 - -0.1
3,800,424 - -0.8
3,800,516 - Pf6N2E2_3294 0.16 +1.5
3,800,561 + Pf6N2E2_3294 0.20 +0.4
3,800,562 - Pf6N2E2_3294 0.20 -0.1
3,800,565 + Pf6N2E2_3294 0.21 +0.2
3,800,566 - Pf6N2E2_3294 0.21 -0.1
3,800,566 - Pf6N2E2_3294 0.21 +0.2
3,800,566 - Pf6N2E2_3294 0.21 +0.1
3,800,566 - Pf6N2E2_3294 0.21 -1.1
3,800,606 + Pf6N2E2_3294 0.25 -0.4
3,800,606 + Pf6N2E2_3294 0.25 -0.7
3,800,607 - Pf6N2E2_3294 0.25 +0.8
3,800,607 - Pf6N2E2_3294 0.25 -0.3
3,800,607 - Pf6N2E2_3294 0.25 -0.8
3,800,607 - Pf6N2E2_3294 0.25 -0.4
3,800,655 + Pf6N2E2_3294 0.30 -0.3
3,800,655 + Pf6N2E2_3294 0.30 +0.6
3,800,656 - Pf6N2E2_3294 0.30 +0.3
3,800,656 - Pf6N2E2_3294 0.30 -0.6
3,800,656 - Pf6N2E2_3294 0.30 -1.0
3,800,771 + Pf6N2E2_3294 0.42 +0.5
3,800,771 + Pf6N2E2_3294 0.42 +2.6
3,800,772 - Pf6N2E2_3294 0.42 +0.4
3,800,772 - Pf6N2E2_3294 0.42 +1.0
3,800,772 - Pf6N2E2_3294 0.42 -1.0
3,800,772 - Pf6N2E2_3294 0.42 -0.9
3,800,856 - Pf6N2E2_3294 0.51 -0.4
3,800,856 - Pf6N2E2_3294 0.51 -0.6
3,800,858 + Pf6N2E2_3294 0.51 +0.8
3,800,895 - Pf6N2E2_3294 0.55 -0.6
3,800,909 + Pf6N2E2_3294 0.56 -0.1
3,800,909 + Pf6N2E2_3294 0.56 +0.1
3,800,963 + Pf6N2E2_3294 0.62 -1.3
3,800,963 + Pf6N2E2_3294 0.62 +2.0
3,800,963 + Pf6N2E2_3294 0.62 -1.3
3,800,963 + Pf6N2E2_3294 0.62 -0.1
3,800,963 + Pf6N2E2_3294 0.62 -1.8
3,800,964 - Pf6N2E2_3294 0.62 -1.0
3,801,086 + Pf6N2E2_3294 0.75 -0.5
3,801,086 + Pf6N2E2_3294 0.75 -0.4
3,801,087 - Pf6N2E2_3294 0.75 -1.5
3,801,087 - Pf6N2E2_3294 0.75 -0.8
3,801,087 - Pf6N2E2_3294 0.75 +1.2
3,801,087 - Pf6N2E2_3294 0.75 +0.5
3,801,143 + Pf6N2E2_3294 0.81 +0.8
3,801,156 + Pf6N2E2_3294 0.82 +0.1
3,801,156 + Pf6N2E2_3294 0.82 +0.4
3,801,165 + Pf6N2E2_3294 0.83 -1.6
3,801,165 + Pf6N2E2_3294 0.83 +1.2
3,801,165 + Pf6N2E2_3294 0.83 -0.6

Or see this region's nucleotide sequence