Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3251

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3250 and Pf6N2E2_3251 are separated by 188 nucleotidesPf6N2E2_3251 and Pf6N2E2_3252 are separated by 1 nucleotides Pf6N2E2_3250 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 3,759,091 to 3,761,229 _3250 Pf6N2E2_3251 - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data), at 3,761,418 to 3,762,470 _3251 Pf6N2E2_3252 - Histidinol dehydrogenase (EC 1.1.1.23), at 3,762,472 to 3,763,809 _3252 Position (kb) 3761 3762 3763Strain fitness (log2 ratio) -3 -2 -1 0 1at 3760.685 kb on + strand, within Pf6N2E2_3250at 3760.686 kb on - strand, within Pf6N2E2_3250at 3760.686 kb on - strand, within Pf6N2E2_3250at 3761.372 kb on + strandat 3761.373 kb on - strandat 3761.689 kb on + strand, within Pf6N2E2_3251at 3761.690 kb on - strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.921 kb on - strand, within Pf6N2E2_3251at 3761.921 kb on - strand, within Pf6N2E2_3251at 3761.921 kb on - strand, within Pf6N2E2_3251at 3762.049 kb on + strand, within Pf6N2E2_3251at 3762.109 kb on + strand, within Pf6N2E2_3251at 3762.121 kb on + strand, within Pf6N2E2_3251at 3762.121 kb on + strand, within Pf6N2E2_3251at 3762.122 kb on - strand, within Pf6N2E2_3251at 3762.130 kb on + strand, within Pf6N2E2_3251at 3762.131 kb on - strand, within Pf6N2E2_3251at 3762.131 kb on - strand, within Pf6N2E2_3251at 3762.139 kb on + strand, within Pf6N2E2_3251at 3762.139 kb on + strand, within Pf6N2E2_3251at 3762.139 kb on + strand, within Pf6N2E2_3251at 3762.139 kb on + strand, within Pf6N2E2_3251at 3762.140 kb on - strand, within Pf6N2E2_3251at 3762.222 kb on - strand, within Pf6N2E2_3251at 3762.253 kb on + strand, within Pf6N2E2_3251at 3762.254 kb on - strand, within Pf6N2E2_3251at 3762.254 kb on - strand, within Pf6N2E2_3251at 3762.256 kb on + strand, within Pf6N2E2_3251at 3762.365 kb on - strandat 3762.427 kb on + strandat 3762.427 kb on + strandat 3762.638 kb on + strand, within Pf6N2E2_3252at 3762.638 kb on + strand, within Pf6N2E2_3252at 3762.638 kb on + strand, within Pf6N2E2_3252at 3762.638 kb on + strand, within Pf6N2E2_3252at 3762.638 kb on + strand, within Pf6N2E2_3252at 3762.639 kb on - strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.146 kb on - strand, within Pf6N2E2_3252at 3763.146 kb on - strand, within Pf6N2E2_3252at 3763.146 kb on - strand, within Pf6N2E2_3252at 3763.146 kb on - strand, within Pf6N2E2_3252at 3763.146 kb on - strand, within Pf6N2E2_3252at 3763.379 kb on + strand, within Pf6N2E2_3252at 3763.404 kb on - strand, within Pf6N2E2_3252at 3763.404 kb on - strand, within Pf6N2E2_3252

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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3,760,685 + Pf6N2E2_3250 0.75 +0.7
3,760,686 - Pf6N2E2_3250 0.75 +0.1
3,760,686 - Pf6N2E2_3250 0.75 +0.4
3,761,372 + +1.3
3,761,373 - +0.8
3,761,689 + Pf6N2E2_3251 0.26 -0.6
3,761,690 - Pf6N2E2_3251 0.26 -1.3
3,761,920 + Pf6N2E2_3251 0.48 -1.0
3,761,920 + Pf6N2E2_3251 0.48 -3.7
3,761,920 + Pf6N2E2_3251 0.48 -1.7
3,761,920 + Pf6N2E2_3251 0.48 -1.4
3,761,920 + Pf6N2E2_3251 0.48 -2.8
3,761,920 + Pf6N2E2_3251 0.48 -1.1
3,761,920 + Pf6N2E2_3251 0.48 -1.3
3,761,920 + Pf6N2E2_3251 0.48 -1.4
3,761,920 + Pf6N2E2_3251 0.48 -1.6
3,761,920 + Pf6N2E2_3251 0.48 -0.7
3,761,921 - Pf6N2E2_3251 0.48 -1.3
3,761,921 - Pf6N2E2_3251 0.48 -1.6
3,761,921 - Pf6N2E2_3251 0.48 -0.2
3,762,049 + Pf6N2E2_3251 0.60 -0.5
3,762,109 + Pf6N2E2_3251 0.66 -2.3
3,762,121 + Pf6N2E2_3251 0.67 -1.6
3,762,121 + Pf6N2E2_3251 0.67 +1.0
3,762,122 - Pf6N2E2_3251 0.67 -2.2
3,762,130 + Pf6N2E2_3251 0.68 -2.1
3,762,131 - Pf6N2E2_3251 0.68 -1.7
3,762,131 - Pf6N2E2_3251 0.68 -1.9
3,762,139 + Pf6N2E2_3251 0.68 -3.3
3,762,139 + Pf6N2E2_3251 0.68 -0.7
3,762,139 + Pf6N2E2_3251 0.68 +0.0
3,762,139 + Pf6N2E2_3251 0.68 -1.0
3,762,140 - Pf6N2E2_3251 0.69 -1.3
3,762,222 - Pf6N2E2_3251 0.76 -0.0
3,762,253 + Pf6N2E2_3251 0.79 -1.0
3,762,254 - Pf6N2E2_3251 0.79 -3.0
3,762,254 - Pf6N2E2_3251 0.79 -0.5
3,762,256 + Pf6N2E2_3251 0.80 -1.6
3,762,365 - +0.0
3,762,427 + -2.5
3,762,427 + +0.2
3,762,638 + Pf6N2E2_3252 0.12 -2.3
3,762,638 + Pf6N2E2_3252 0.12 -2.5
3,762,638 + Pf6N2E2_3252 0.12 -1.0
3,762,638 + Pf6N2E2_3252 0.12 -2.7
3,762,638 + Pf6N2E2_3252 0.12 -2.7
3,762,639 - Pf6N2E2_3252 0.12 -2.2
3,763,145 + Pf6N2E2_3252 0.50 -3.0
3,763,145 + Pf6N2E2_3252 0.50 -2.4
3,763,145 + Pf6N2E2_3252 0.50 +0.6
3,763,145 + Pf6N2E2_3252 0.50 -1.8
3,763,145 + Pf6N2E2_3252 0.50 -1.2
3,763,145 + Pf6N2E2_3252 0.50 -3.0
3,763,145 + Pf6N2E2_3252 0.50 -0.6
3,763,145 + Pf6N2E2_3252 0.50 -2.2
3,763,145 + Pf6N2E2_3252 0.50 -0.9
3,763,145 + Pf6N2E2_3252 0.50 -1.7
3,763,146 - Pf6N2E2_3252 0.50 -2.5
3,763,146 - Pf6N2E2_3252 0.50 -1.9
3,763,146 - Pf6N2E2_3252 0.50 -1.0
3,763,146 - Pf6N2E2_3252 0.50 -2.4
3,763,146 - Pf6N2E2_3252 0.50 +1.0
3,763,379 + Pf6N2E2_3252 0.68 -3.3
3,763,404 - Pf6N2E2_3252 0.70 -1.2
3,763,404 - Pf6N2E2_3252 0.70 -1.3

Or see this region's nucleotide sequence