Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3042 and Pf6N2E2_3043 are separated by 43 nucleotides Pf6N2E2_3043 and Pf6N2E2_3044 are separated by 8 nucleotides Pf6N2E2_3044 and Pf6N2E2_3045 are separated by 107 nucleotides
Pf6N2E2_3042 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12), at 3,526,319 to 3,526,792
_3042
Pf6N2E2_3043 - S-formylglutathione hydrolase (EC 3.1.2.12), at 3,526,836 to 3,527,681
_3043
Pf6N2E2_3044 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 3,527,690 to 3,528,802
_3044
Pf6N2E2_3045 - Transcriptional regulator, LysR family, in formaldehyde detoxification operon, at 3,528,910 to 3,529,806
_3045
Position (kb)
3527
3528
3529 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3526.828 kb on + strand at 3526.829 kb on - strand at 3526.845 kb on + strand at 3526.845 kb on + strand at 3526.846 kb on - strand at 3526.900 kb on + strand at 3526.900 kb on + strand at 3526.901 kb on - strand at 3526.901 kb on - strand at 3526.901 kb on - strand at 3526.901 kb on - strand at 3526.901 kb on - strand at 3526.901 kb on - strand at 3526.901 kb on - strand at 3526.913 kb on - strand at 3527.308 kb on + strand, within Pf6N2E2_3043 at 3527.308 kb on + strand, within Pf6N2E2_3043 at 3527.308 kb on + strand, within Pf6N2E2_3043 at 3527.308 kb on + strand, within Pf6N2E2_3043 at 3527.308 kb on + strand, within Pf6N2E2_3043 at 3527.308 kb on + strand, within Pf6N2E2_3043 at 3527.309 kb on - strand, within Pf6N2E2_3043 at 3527.309 kb on - strand, within Pf6N2E2_3043 at 3527.309 kb on - strand, within Pf6N2E2_3043 at 3527.309 kb on - strand, within Pf6N2E2_3043 at 3527.323 kb on + strand, within Pf6N2E2_3043 at 3527.359 kb on + strand, within Pf6N2E2_3043 at 3527.360 kb on - strand, within Pf6N2E2_3043 at 3527.574 kb on + strand, within Pf6N2E2_3043 at 3527.578 kb on + strand, within Pf6N2E2_3043 at 3527.578 kb on + strand, within Pf6N2E2_3043 at 3527.579 kb on - strand, within Pf6N2E2_3043 at 3527.752 kb on + strand at 3527.786 kb on - strand at 3527.823 kb on + strand, within Pf6N2E2_3044 at 3527.823 kb on + strand, within Pf6N2E2_3044 at 3527.823 kb on + strand, within Pf6N2E2_3044 at 3527.824 kb on - strand, within Pf6N2E2_3044 at 3527.824 kb on - strand, within Pf6N2E2_3044 at 3527.824 kb on - strand, within Pf6N2E2_3044 at 3528.370 kb on - strand, within Pf6N2E2_3044 at 3528.370 kb on - strand, within Pf6N2E2_3044 at 3528.397 kb on - strand, within Pf6N2E2_3044 at 3528.397 kb on - strand, within Pf6N2E2_3044 at 3528.397 kb on - strand, within Pf6N2E2_3044 at 3528.421 kb on - strand, within Pf6N2E2_3044 at 3528.506 kb on - strand, within Pf6N2E2_3044 at 3528.506 kb on - strand, within Pf6N2E2_3044 at 3528.537 kb on + strand, within Pf6N2E2_3044 at 3528.538 kb on - strand, within Pf6N2E2_3044 at 3528.666 kb on + strand, within Pf6N2E2_3044 at 3528.666 kb on + strand, within Pf6N2E2_3044 at 3528.666 kb on + strand, within Pf6N2E2_3044 at 3528.667 kb on - strand, within Pf6N2E2_3044 at 3528.667 kb on - strand, within Pf6N2E2_3044 at 3528.667 kb on - strand, within Pf6N2E2_3044 at 3528.667 kb on - strand, within Pf6N2E2_3044 at 3528.667 kb on - strand, within Pf6N2E2_3044 at 3528.667 kb on - strand, within Pf6N2E2_3044 at 3528.667 kb on - strand, within Pf6N2E2_3044 at 3528.821 kb on - strand at 3528.821 kb on - strand at 3528.841 kb on - strand at 3528.862 kb on + strand at 3529.011 kb on + strand, within Pf6N2E2_3045 at 3529.046 kb on + strand, within Pf6N2E2_3045 at 3529.046 kb on + strand, within Pf6N2E2_3045 at 3529.046 kb on + strand, within Pf6N2E2_3045 at 3529.046 kb on + strand, within Pf6N2E2_3045 at 3529.047 kb on - strand, within Pf6N2E2_3045 at 3529.063 kb on + strand, within Pf6N2E2_3045 at 3529.234 kb on - strand, within Pf6N2E2_3045 at 3529.234 kb on - strand, within Pf6N2E2_3045 at 3529.319 kb on + strand, within Pf6N2E2_3045 at 3529.320 kb on - strand, within Pf6N2E2_3045 at 3529.405 kb on + strand, within Pf6N2E2_3045 at 3529.405 kb on + strand, within Pf6N2E2_3045 at 3529.405 kb on + strand, within Pf6N2E2_3045 at 3529.406 kb on - strand, within Pf6N2E2_3045 at 3529.426 kb on + strand, within Pf6N2E2_3045 at 3529.427 kb on - strand, within Pf6N2E2_3045 at 3529.438 kb on + strand, within Pf6N2E2_3045 at 3529.452 kb on + strand, within Pf6N2E2_3045 at 3529.453 kb on - strand, within Pf6N2E2_3045 at 3529.453 kb on - strand, within Pf6N2E2_3045 at 3529.453 kb on - strand, within Pf6N2E2_3045 at 3529.627 kb on + strand, within Pf6N2E2_3045 at 3529.627 kb on + strand, within Pf6N2E2_3045 at 3529.630 kb on + strand, within Pf6N2E2_3045 at 3529.630 kb on + strand, within Pf6N2E2_3045 at 3529.631 kb on - strand, within Pf6N2E2_3045 at 3529.631 kb on - strand, within Pf6N2E2_3045 at 3529.631 kb on - strand, within Pf6N2E2_3045 at 3529.715 kb on - strand, within Pf6N2E2_3045 at 3529.762 kb on + strand at 3529.762 kb on + strand at 3529.763 kb on - strand at 3529.763 kb on - strand at 3529.763 kb on - strand at 3529.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 3,526,828 + +0.1 3,526,829 - -0.1 3,526,845 + +0.1 3,526,845 + +0.3 3,526,846 - -0.3 3,526,900 + +0.4 3,526,900 + +0.7 3,526,901 - +1.6 3,526,901 - +0.6 3,526,901 - +0.4 3,526,901 - +1.6 3,526,901 - +0.6 3,526,901 - +0.8 3,526,901 - +1.9 3,526,913 - +0.5 3,527,308 + Pf6N2E2_3043 0.56 -0.1 3,527,308 + Pf6N2E2_3043 0.56 -1.3 3,527,308 + Pf6N2E2_3043 0.56 +0.4 3,527,308 + Pf6N2E2_3043 0.56 +0.2 3,527,308 + Pf6N2E2_3043 0.56 -0.2 3,527,308 + Pf6N2E2_3043 0.56 +0.3 3,527,309 - Pf6N2E2_3043 0.56 +1.8 3,527,309 - Pf6N2E2_3043 0.56 -0.7 3,527,309 - Pf6N2E2_3043 0.56 -1.0 3,527,309 - Pf6N2E2_3043 0.56 +1.0 3,527,323 + Pf6N2E2_3043 0.58 -2.0 3,527,359 + Pf6N2E2_3043 0.62 -0.4 3,527,360 - Pf6N2E2_3043 0.62 +0.0 3,527,574 + Pf6N2E2_3043 0.87 +1.1 3,527,578 + Pf6N2E2_3043 0.88 +0.4 3,527,578 + Pf6N2E2_3043 0.88 +0.8 3,527,579 - Pf6N2E2_3043 0.88 +0.2 3,527,752 + -2.2 3,527,786 - -0.1 3,527,823 + Pf6N2E2_3044 0.12 -1.4 3,527,823 + Pf6N2E2_3044 0.12 -0.3 3,527,823 + Pf6N2E2_3044 0.12 +0.5 3,527,824 - Pf6N2E2_3044 0.12 -1.5 3,527,824 - Pf6N2E2_3044 0.12 +0.3 3,527,824 - Pf6N2E2_3044 0.12 +1.5 3,528,370 - Pf6N2E2_3044 0.61 -0.8 3,528,370 - Pf6N2E2_3044 0.61 -0.2 3,528,397 - Pf6N2E2_3044 0.64 -0.2 3,528,397 - Pf6N2E2_3044 0.64 -1.1 3,528,397 - Pf6N2E2_3044 0.64 -0.3 3,528,421 - Pf6N2E2_3044 0.66 -1.1 3,528,506 - Pf6N2E2_3044 0.73 -0.2 3,528,506 - Pf6N2E2_3044 0.73 +0.3 3,528,537 + Pf6N2E2_3044 0.76 +0.5 3,528,538 - Pf6N2E2_3044 0.76 -2.1 3,528,666 + Pf6N2E2_3044 0.88 +0.5 3,528,666 + Pf6N2E2_3044 0.88 -0.1 3,528,666 + Pf6N2E2_3044 0.88 +2.6 3,528,667 - Pf6N2E2_3044 0.88 -0.2 3,528,667 - Pf6N2E2_3044 0.88 +0.5 3,528,667 - Pf6N2E2_3044 0.88 +0.4 3,528,667 - Pf6N2E2_3044 0.88 -0.6 3,528,667 - Pf6N2E2_3044 0.88 -0.0 3,528,667 - Pf6N2E2_3044 0.88 -0.7 3,528,667 - Pf6N2E2_3044 0.88 +1.6 3,528,821 - +0.4 3,528,821 - +0.5 3,528,841 - +0.9 3,528,862 + -0.2 3,529,011 + Pf6N2E2_3045 0.11 -0.2 3,529,046 + Pf6N2E2_3045 0.15 -0.4 3,529,046 + Pf6N2E2_3045 0.15 -0.7 3,529,046 + Pf6N2E2_3045 0.15 -1.3 3,529,046 + Pf6N2E2_3045 0.15 -1.0 3,529,047 - Pf6N2E2_3045 0.15 +0.7 3,529,063 + Pf6N2E2_3045 0.17 +1.0 3,529,234 - Pf6N2E2_3045 0.36 +0.3 3,529,234 - Pf6N2E2_3045 0.36 +0.6 3,529,319 + Pf6N2E2_3045 0.46 +1.1 3,529,320 - Pf6N2E2_3045 0.46 +0.5 3,529,405 + Pf6N2E2_3045 0.55 +0.7 3,529,405 + Pf6N2E2_3045 0.55 +0.3 3,529,405 + Pf6N2E2_3045 0.55 +1.6 3,529,406 - Pf6N2E2_3045 0.55 +0.8 3,529,426 + Pf6N2E2_3045 0.58 -0.2 3,529,427 - Pf6N2E2_3045 0.58 +1.0 3,529,438 + Pf6N2E2_3045 0.59 +0.5 3,529,452 + Pf6N2E2_3045 0.60 -1.9 3,529,453 - Pf6N2E2_3045 0.61 -0.5 3,529,453 - Pf6N2E2_3045 0.61 +0.5 3,529,453 - Pf6N2E2_3045 0.61 +1.3 3,529,627 + Pf6N2E2_3045 0.80 -0.0 3,529,627 + Pf6N2E2_3045 0.80 +0.3 3,529,630 + Pf6N2E2_3045 0.80 +1.0 3,529,630 + Pf6N2E2_3045 0.80 +1.9 3,529,631 - Pf6N2E2_3045 0.80 +0.9 3,529,631 - Pf6N2E2_3045 0.80 +0.2 3,529,631 - Pf6N2E2_3045 0.80 -0.7 3,529,715 - Pf6N2E2_3045 0.90 +0.2 3,529,762 + -1.6 3,529,762 + -0.1 3,529,763 - +0.3 3,529,763 - -0.1 3,529,763 - +0.5 3,529,763 - -0.5
Or see this region's nucleotide sequence