Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2825

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2824 and Pf6N2E2_2825 overlap by 4 nucleotidesPf6N2E2_2825 and Pf6N2E2_2826 are separated by 442 nucleotidesPf6N2E2_2826 and Pf6N2E2_2827 are separated by 252 nucleotides Pf6N2E2_2824 - RND efflux system, inner membrane transporter CmeB, at 3,310,688 to 3,313,852 _2824 Pf6N2E2_2825 - RND efflux system, outer membrane lipoprotein CmeC, at 3,313,849 to 3,315,306 _2825 Pf6N2E2_2826 - hypothetical protein, at 3,315,749 to 3,316,039 _2826 Pf6N2E2_2827 - hypothetical protein, at 3,316,292 to 3,316,642 _2827 Position (kb) 3313 3314 3315 3316Strain fitness (log2 ratio) -3 -2 -1 0 1at 3312.964 kb on + strand, within Pf6N2E2_2824at 3312.964 kb on + strand, within Pf6N2E2_2824at 3312.968 kb on + strand, within Pf6N2E2_2824at 3312.968 kb on + strand, within Pf6N2E2_2824at 3312.968 kb on + strand, within Pf6N2E2_2824at 3312.968 kb on + strand, within Pf6N2E2_2824at 3312.969 kb on - strand, within Pf6N2E2_2824at 3312.969 kb on - strand, within Pf6N2E2_2824at 3313.010 kb on + strand, within Pf6N2E2_2824at 3313.010 kb on + strand, within Pf6N2E2_2824at 3313.010 kb on + strand, within Pf6N2E2_2824at 3313.011 kb on - strand, within Pf6N2E2_2824at 3313.064 kb on + strand, within Pf6N2E2_2824at 3313.065 kb on - strand, within Pf6N2E2_2824at 3313.065 kb on - strand, within Pf6N2E2_2824at 3313.287 kb on - strand, within Pf6N2E2_2824at 3313.370 kb on + strand, within Pf6N2E2_2824at 3313.472 kb on + strand, within Pf6N2E2_2824at 3313.472 kb on + strand, within Pf6N2E2_2824at 3313.472 kb on + strand, within Pf6N2E2_2824at 3313.597 kb on + strandat 3313.598 kb on - strandat 3314.113 kb on + strand, within Pf6N2E2_2825at 3314.114 kb on - strand, within Pf6N2E2_2825at 3314.125 kb on + strand, within Pf6N2E2_2825at 3314.266 kb on + strand, within Pf6N2E2_2825at 3314.324 kb on - strand, within Pf6N2E2_2825at 3314.389 kb on + strand, within Pf6N2E2_2825at 3314.449 kb on + strand, within Pf6N2E2_2825at 3314.965 kb on + strand, within Pf6N2E2_2825at 3315.028 kb on + strand, within Pf6N2E2_2825at 3315.028 kb on + strand, within Pf6N2E2_2825at 3315.079 kb on + strand, within Pf6N2E2_2825at 3315.080 kb on - strand, within Pf6N2E2_2825at 3315.082 kb on + strand, within Pf6N2E2_2825at 3315.082 kb on + strand, within Pf6N2E2_2825at 3315.083 kb on - strand, within Pf6N2E2_2825at 3315.220 kb on + strandat 3315.221 kb on - strandat 3315.221 kb on - strandat 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.308 kb on - strandat 3315.308 kb on - strandat 3315.308 kb on - strandat 3315.308 kb on - strandat 3315.308 kb on - strandat 3315.360 kb on + strandat 3315.361 kb on - strandat 3315.452 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.545 kb on - strandat 3315.718 kb on + strandat 3315.719 kb on - strandat 3315.719 kb on - strandat 3315.719 kb on - strandat 3315.719 kb on - strandat 3315.723 kb on - strandat 3315.723 kb on - strandat 3316.157 kb on + strandat 3316.157 kb on + strandat 3316.157 kb on + strandat 3316.208 kb on + strandat 3316.278 kb on + strandat 3316.278 kb on + strandat 3316.278 kb on + strandat 3316.279 kb on - strandat 3316.279 kb on - strandat 3316.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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3,312,964 + Pf6N2E2_2824 0.72 +0.2
3,312,964 + Pf6N2E2_2824 0.72 -1.6
3,312,968 + Pf6N2E2_2824 0.72 -1.2
3,312,968 + Pf6N2E2_2824 0.72 -2.3
3,312,968 + Pf6N2E2_2824 0.72 -2.6
3,312,968 + Pf6N2E2_2824 0.72 -1.6
3,312,969 - Pf6N2E2_2824 0.72 -1.4
3,312,969 - Pf6N2E2_2824 0.72 +0.2
3,313,010 + Pf6N2E2_2824 0.73 -1.1
3,313,010 + Pf6N2E2_2824 0.73 -1.5
3,313,010 + Pf6N2E2_2824 0.73 -2.9
3,313,011 - Pf6N2E2_2824 0.73 -1.0
3,313,064 + Pf6N2E2_2824 0.75 -2.6
3,313,065 - Pf6N2E2_2824 0.75 -1.1
3,313,065 - Pf6N2E2_2824 0.75 -1.6
3,313,287 - Pf6N2E2_2824 0.82 -2.2
3,313,370 + Pf6N2E2_2824 0.85 -1.6
3,313,472 + Pf6N2E2_2824 0.88 -2.3
3,313,472 + Pf6N2E2_2824 0.88 -1.3
3,313,472 + Pf6N2E2_2824 0.88 -0.6
3,313,597 + -1.3
3,313,598 - -0.5
3,314,113 + Pf6N2E2_2825 0.18 -1.8
3,314,114 - Pf6N2E2_2825 0.18 +0.2
3,314,125 + Pf6N2E2_2825 0.19 +0.8
3,314,266 + Pf6N2E2_2825 0.29 -0.8
3,314,324 - Pf6N2E2_2825 0.33 -1.0
3,314,389 + Pf6N2E2_2825 0.37 -0.5
3,314,449 + Pf6N2E2_2825 0.41 +0.8
3,314,965 + Pf6N2E2_2825 0.77 -1.5
3,315,028 + Pf6N2E2_2825 0.81 -1.0
3,315,028 + Pf6N2E2_2825 0.81 -2.3
3,315,079 + Pf6N2E2_2825 0.84 -1.2
3,315,080 - Pf6N2E2_2825 0.84 -1.0
3,315,082 + Pf6N2E2_2825 0.85 +0.2
3,315,082 + Pf6N2E2_2825 0.85 -2.2
3,315,083 - Pf6N2E2_2825 0.85 -1.2
3,315,220 + -2.0
3,315,221 - -2.1
3,315,221 - +0.2
3,315,307 + -1.2
3,315,307 + +0.9
3,315,307 + -1.8
3,315,307 + -0.2
3,315,307 + -1.5
3,315,307 + -0.0
3,315,307 + -0.5
3,315,307 + +0.3
3,315,308 - +1.6
3,315,308 - -1.8
3,315,308 - +0.5
3,315,308 - -0.4
3,315,308 - -1.3
3,315,360 + -0.8
3,315,361 - +0.5
3,315,452 - -1.3
3,315,543 - +0.2
3,315,543 - +1.6
3,315,543 - -0.1
3,315,543 - +1.5
3,315,543 - -0.0
3,315,543 - -1.2
3,315,543 - -1.0
3,315,543 - +0.0
3,315,545 - +0.0
3,315,718 + +1.2
3,315,719 - -3.1
3,315,719 - -0.5
3,315,719 - -0.9
3,315,719 - +0.0
3,315,723 - +0.5
3,315,723 - -0.3
3,316,157 + +0.2
3,316,157 + -0.8
3,316,157 + -0.7
3,316,208 + +0.5
3,316,278 + -1.2
3,316,278 + -0.6
3,316,278 + -0.5
3,316,279 - +0.4
3,316,279 - +1.2
3,316,279 - -0.5

Or see this region's nucleotide sequence