Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2824 and Pf6N2E2_2825 overlap by 4 nucleotides Pf6N2E2_2825 and Pf6N2E2_2826 are separated by 442 nucleotides Pf6N2E2_2826 and Pf6N2E2_2827 are separated by 252 nucleotides
Pf6N2E2_2824 - RND efflux system, inner membrane transporter CmeB, at 3,310,688 to 3,313,852
_2824
Pf6N2E2_2825 - RND efflux system, outer membrane lipoprotein CmeC, at 3,313,849 to 3,315,306
_2825
Pf6N2E2_2826 - hypothetical protein, at 3,315,749 to 3,316,039
_2826
Pf6N2E2_2827 - hypothetical protein, at 3,316,292 to 3,316,642
_2827
Position (kb)
3313
3314
3315
3316 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3312.964 kb on + strand, within Pf6N2E2_2824 at 3312.964 kb on + strand, within Pf6N2E2_2824 at 3312.968 kb on + strand, within Pf6N2E2_2824 at 3312.968 kb on + strand, within Pf6N2E2_2824 at 3312.968 kb on + strand, within Pf6N2E2_2824 at 3312.968 kb on + strand, within Pf6N2E2_2824 at 3312.969 kb on - strand, within Pf6N2E2_2824 at 3312.969 kb on - strand, within Pf6N2E2_2824 at 3313.010 kb on + strand, within Pf6N2E2_2824 at 3313.010 kb on + strand, within Pf6N2E2_2824 at 3313.010 kb on + strand, within Pf6N2E2_2824 at 3313.011 kb on - strand, within Pf6N2E2_2824 at 3313.064 kb on + strand, within Pf6N2E2_2824 at 3313.065 kb on - strand, within Pf6N2E2_2824 at 3313.065 kb on - strand, within Pf6N2E2_2824 at 3313.287 kb on - strand, within Pf6N2E2_2824 at 3313.370 kb on + strand, within Pf6N2E2_2824 at 3313.472 kb on + strand, within Pf6N2E2_2824 at 3313.472 kb on + strand, within Pf6N2E2_2824 at 3313.472 kb on + strand, within Pf6N2E2_2824 at 3313.597 kb on + strand at 3313.598 kb on - strand at 3314.113 kb on + strand, within Pf6N2E2_2825 at 3314.114 kb on - strand, within Pf6N2E2_2825 at 3314.125 kb on + strand, within Pf6N2E2_2825 at 3314.266 kb on + strand, within Pf6N2E2_2825 at 3314.324 kb on - strand, within Pf6N2E2_2825 at 3314.389 kb on + strand, within Pf6N2E2_2825 at 3314.449 kb on + strand, within Pf6N2E2_2825 at 3314.965 kb on + strand, within Pf6N2E2_2825 at 3315.028 kb on + strand, within Pf6N2E2_2825 at 3315.028 kb on + strand, within Pf6N2E2_2825 at 3315.079 kb on + strand, within Pf6N2E2_2825 at 3315.080 kb on - strand, within Pf6N2E2_2825 at 3315.082 kb on + strand, within Pf6N2E2_2825 at 3315.082 kb on + strand, within Pf6N2E2_2825 at 3315.083 kb on - strand, within Pf6N2E2_2825 at 3315.220 kb on + strand at 3315.221 kb on - strand at 3315.221 kb on - strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.308 kb on - strand at 3315.308 kb on - strand at 3315.308 kb on - strand at 3315.308 kb on - strand at 3315.308 kb on - strand at 3315.360 kb on + strand at 3315.361 kb on - strand at 3315.452 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.545 kb on - strand at 3315.718 kb on + strand at 3315.719 kb on - strand at 3315.719 kb on - strand at 3315.719 kb on - strand at 3315.719 kb on - strand at 3315.723 kb on - strand at 3315.723 kb on - strand at 3316.157 kb on + strand at 3316.157 kb on + strand at 3316.157 kb on + strand at 3316.208 kb on + strand at 3316.278 kb on + strand at 3316.278 kb on + strand at 3316.278 kb on + strand at 3316.279 kb on - strand at 3316.279 kb on - strand at 3316.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 3,312,964 + Pf6N2E2_2824 0.72 +0.2 3,312,964 + Pf6N2E2_2824 0.72 -1.6 3,312,968 + Pf6N2E2_2824 0.72 -1.2 3,312,968 + Pf6N2E2_2824 0.72 -2.3 3,312,968 + Pf6N2E2_2824 0.72 -2.6 3,312,968 + Pf6N2E2_2824 0.72 -1.6 3,312,969 - Pf6N2E2_2824 0.72 -1.4 3,312,969 - Pf6N2E2_2824 0.72 +0.2 3,313,010 + Pf6N2E2_2824 0.73 -1.1 3,313,010 + Pf6N2E2_2824 0.73 -1.5 3,313,010 + Pf6N2E2_2824 0.73 -2.9 3,313,011 - Pf6N2E2_2824 0.73 -1.0 3,313,064 + Pf6N2E2_2824 0.75 -2.6 3,313,065 - Pf6N2E2_2824 0.75 -1.1 3,313,065 - Pf6N2E2_2824 0.75 -1.6 3,313,287 - Pf6N2E2_2824 0.82 -2.2 3,313,370 + Pf6N2E2_2824 0.85 -1.6 3,313,472 + Pf6N2E2_2824 0.88 -2.3 3,313,472 + Pf6N2E2_2824 0.88 -1.3 3,313,472 + Pf6N2E2_2824 0.88 -0.6 3,313,597 + -1.3 3,313,598 - -0.5 3,314,113 + Pf6N2E2_2825 0.18 -1.8 3,314,114 - Pf6N2E2_2825 0.18 +0.2 3,314,125 + Pf6N2E2_2825 0.19 +0.8 3,314,266 + Pf6N2E2_2825 0.29 -0.8 3,314,324 - Pf6N2E2_2825 0.33 -1.0 3,314,389 + Pf6N2E2_2825 0.37 -0.5 3,314,449 + Pf6N2E2_2825 0.41 +0.8 3,314,965 + Pf6N2E2_2825 0.77 -1.5 3,315,028 + Pf6N2E2_2825 0.81 -1.0 3,315,028 + Pf6N2E2_2825 0.81 -2.3 3,315,079 + Pf6N2E2_2825 0.84 -1.2 3,315,080 - Pf6N2E2_2825 0.84 -1.0 3,315,082 + Pf6N2E2_2825 0.85 +0.2 3,315,082 + Pf6N2E2_2825 0.85 -2.2 3,315,083 - Pf6N2E2_2825 0.85 -1.2 3,315,220 + -2.0 3,315,221 - -2.1 3,315,221 - +0.2 3,315,307 + -1.2 3,315,307 + +0.9 3,315,307 + -1.8 3,315,307 + -0.2 3,315,307 + -1.5 3,315,307 + -0.0 3,315,307 + -0.5 3,315,307 + +0.3 3,315,308 - +1.6 3,315,308 - -1.8 3,315,308 - +0.5 3,315,308 - -0.4 3,315,308 - -1.3 3,315,360 + -0.8 3,315,361 - +0.5 3,315,452 - -1.3 3,315,543 - +0.2 3,315,543 - +1.6 3,315,543 - -0.1 3,315,543 - +1.5 3,315,543 - -0.0 3,315,543 - -1.2 3,315,543 - -1.0 3,315,543 - +0.0 3,315,545 - +0.0 3,315,718 + +1.2 3,315,719 - -3.1 3,315,719 - -0.5 3,315,719 - -0.9 3,315,719 - +0.0 3,315,723 - +0.5 3,315,723 - -0.3 3,316,157 + +0.2 3,316,157 + -0.8 3,316,157 + -0.7 3,316,208 + +0.5 3,316,278 + -1.2 3,316,278 + -0.6 3,316,278 + -0.5 3,316,279 - +0.4 3,316,279 - +1.2 3,316,279 - -0.5
Or see this region's nucleotide sequence