Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2823 and Pf6N2E2_2824 are separated by 3 nucleotides Pf6N2E2_2824 and Pf6N2E2_2825 overlap by 4 nucleotides
Pf6N2E2_2823 - Multidrug efflux RND membrane fusion protein MexC, at 3,309,527 to 3,310,684
_2823
Pf6N2E2_2824 - RND efflux system, inner membrane transporter CmeB, at 3,310,688 to 3,313,852
_2824
Pf6N2E2_2825 - RND efflux system, outer membrane lipoprotein CmeC, at 3,313,849 to 3,315,306
_2825
Position (kb)
3310
3311
3312
3313
3314 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3309.797 kb on + strand, within Pf6N2E2_2823 at 3309.818 kb on + strand, within Pf6N2E2_2823 at 3309.818 kb on + strand, within Pf6N2E2_2823 at 3309.819 kb on - strand, within Pf6N2E2_2823 at 3309.924 kb on - strand, within Pf6N2E2_2823 at 3309.992 kb on + strand, within Pf6N2E2_2823 at 3309.993 kb on - strand, within Pf6N2E2_2823 at 3310.004 kb on + strand, within Pf6N2E2_2823 at 3310.112 kb on + strand, within Pf6N2E2_2823 at 3310.113 kb on - strand, within Pf6N2E2_2823 at 3310.113 kb on - strand, within Pf6N2E2_2823 at 3310.238 kb on + strand, within Pf6N2E2_2823 at 3310.657 kb on + strand at 3310.658 kb on - strand at 3310.916 kb on + strand at 3310.917 kb on - strand at 3310.920 kb on + strand at 3310.920 kb on + strand at 3310.920 kb on + strand at 3310.921 kb on - strand at 3310.934 kb on - strand at 3311.156 kb on + strand, within Pf6N2E2_2824 at 3311.156 kb on + strand, within Pf6N2E2_2824 at 3311.156 kb on + strand, within Pf6N2E2_2824 at 3311.232 kb on - strand, within Pf6N2E2_2824 at 3311.386 kb on + strand, within Pf6N2E2_2824 at 3311.387 kb on - strand, within Pf6N2E2_2824 at 3311.387 kb on - strand, within Pf6N2E2_2824 at 3311.387 kb on - strand, within Pf6N2E2_2824 at 3311.510 kb on + strand, within Pf6N2E2_2824 at 3311.510 kb on + strand, within Pf6N2E2_2824 at 3311.510 kb on + strand, within Pf6N2E2_2824 at 3311.511 kb on - strand, within Pf6N2E2_2824 at 3311.511 kb on - strand, within Pf6N2E2_2824 at 3311.748 kb on + strand, within Pf6N2E2_2824 at 3311.811 kb on + strand, within Pf6N2E2_2824 at 3311.812 kb on - strand, within Pf6N2E2_2824 at 3312.030 kb on + strand, within Pf6N2E2_2824 at 3312.030 kb on + strand, within Pf6N2E2_2824 at 3312.031 kb on - strand, within Pf6N2E2_2824 at 3312.031 kb on - strand, within Pf6N2E2_2824 at 3312.086 kb on + strand, within Pf6N2E2_2824 at 3312.086 kb on + strand, within Pf6N2E2_2824 at 3312.087 kb on - strand, within Pf6N2E2_2824 at 3312.087 kb on - strand, within Pf6N2E2_2824 at 3312.309 kb on - strand, within Pf6N2E2_2824 at 3312.320 kb on + strand, within Pf6N2E2_2824 at 3312.320 kb on + strand, within Pf6N2E2_2824 at 3312.320 kb on + strand, within Pf6N2E2_2824 at 3312.320 kb on + strand, within Pf6N2E2_2824 at 3312.321 kb on - strand, within Pf6N2E2_2824 at 3312.414 kb on + strand, within Pf6N2E2_2824 at 3312.744 kb on + strand, within Pf6N2E2_2824 at 3312.843 kb on + strand, within Pf6N2E2_2824 at 3312.843 kb on + strand, within Pf6N2E2_2824 at 3312.843 kb on + strand, within Pf6N2E2_2824 at 3312.964 kb on + strand, within Pf6N2E2_2824 at 3312.964 kb on + strand, within Pf6N2E2_2824 at 3312.968 kb on + strand, within Pf6N2E2_2824 at 3312.968 kb on + strand, within Pf6N2E2_2824 at 3312.968 kb on + strand, within Pf6N2E2_2824 at 3312.968 kb on + strand, within Pf6N2E2_2824 at 3312.969 kb on - strand, within Pf6N2E2_2824 at 3312.969 kb on - strand, within Pf6N2E2_2824 at 3313.010 kb on + strand, within Pf6N2E2_2824 at 3313.010 kb on + strand, within Pf6N2E2_2824 at 3313.010 kb on + strand, within Pf6N2E2_2824 at 3313.011 kb on - strand, within Pf6N2E2_2824 at 3313.064 kb on + strand, within Pf6N2E2_2824 at 3313.065 kb on - strand, within Pf6N2E2_2824 at 3313.065 kb on - strand, within Pf6N2E2_2824 at 3313.287 kb on - strand, within Pf6N2E2_2824 at 3313.370 kb on + strand, within Pf6N2E2_2824 at 3313.472 kb on + strand, within Pf6N2E2_2824 at 3313.472 kb on + strand, within Pf6N2E2_2824 at 3313.472 kb on + strand, within Pf6N2E2_2824 at 3313.597 kb on + strand at 3313.598 kb on - strand at 3314.113 kb on + strand, within Pf6N2E2_2825 at 3314.114 kb on - strand, within Pf6N2E2_2825 at 3314.125 kb on + strand, within Pf6N2E2_2825 at 3314.266 kb on + strand, within Pf6N2E2_2825 at 3314.324 kb on - strand, within Pf6N2E2_2825 at 3314.389 kb on + strand, within Pf6N2E2_2825 at 3314.449 kb on + strand, within Pf6N2E2_2825
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 3,309,797 + Pf6N2E2_2823 0.23 -1.2 3,309,818 + Pf6N2E2_2823 0.25 -1.6 3,309,818 + Pf6N2E2_2823 0.25 +0.4 3,309,819 - Pf6N2E2_2823 0.25 -1.3 3,309,924 - Pf6N2E2_2823 0.34 -0.8 3,309,992 + Pf6N2E2_2823 0.40 -2.1 3,309,993 - Pf6N2E2_2823 0.40 -1.8 3,310,004 + Pf6N2E2_2823 0.41 -1.7 3,310,112 + Pf6N2E2_2823 0.51 -0.2 3,310,113 - Pf6N2E2_2823 0.51 -0.2 3,310,113 - Pf6N2E2_2823 0.51 +0.0 3,310,238 + Pf6N2E2_2823 0.61 -0.9 3,310,657 + -1.2 3,310,658 - -1.3 3,310,916 + -2.2 3,310,917 - -1.9 3,310,920 + -1.2 3,310,920 + -0.6 3,310,920 + -1.2 3,310,921 - +1.8 3,310,934 - -0.2 3,311,156 + Pf6N2E2_2824 0.15 -0.9 3,311,156 + Pf6N2E2_2824 0.15 -1.6 3,311,156 + Pf6N2E2_2824 0.15 -2.5 3,311,232 - Pf6N2E2_2824 0.17 -1.6 3,311,386 + Pf6N2E2_2824 0.22 -3.3 3,311,387 - Pf6N2E2_2824 0.22 -1.3 3,311,387 - Pf6N2E2_2824 0.22 -1.8 3,311,387 - Pf6N2E2_2824 0.22 -2.1 3,311,510 + Pf6N2E2_2824 0.26 -0.9 3,311,510 + Pf6N2E2_2824 0.26 -1.6 3,311,510 + Pf6N2E2_2824 0.26 -2.9 3,311,511 - Pf6N2E2_2824 0.26 -1.3 3,311,511 - Pf6N2E2_2824 0.26 +0.2 3,311,748 + Pf6N2E2_2824 0.33 +0.5 3,311,811 + Pf6N2E2_2824 0.35 -1.9 3,311,812 - Pf6N2E2_2824 0.36 -0.8 3,312,030 + Pf6N2E2_2824 0.42 -1.0 3,312,030 + Pf6N2E2_2824 0.42 -1.0 3,312,031 - Pf6N2E2_2824 0.42 -1.5 3,312,031 - Pf6N2E2_2824 0.42 +0.2 3,312,086 + Pf6N2E2_2824 0.44 -1.3 3,312,086 + Pf6N2E2_2824 0.44 -2.6 3,312,087 - Pf6N2E2_2824 0.44 -0.7 3,312,087 - Pf6N2E2_2824 0.44 +0.0 3,312,309 - Pf6N2E2_2824 0.51 -1.2 3,312,320 + Pf6N2E2_2824 0.52 -2.8 3,312,320 + Pf6N2E2_2824 0.52 -0.6 3,312,320 + Pf6N2E2_2824 0.52 -1.5 3,312,320 + Pf6N2E2_2824 0.52 -0.8 3,312,321 - Pf6N2E2_2824 0.52 -2.3 3,312,414 + Pf6N2E2_2824 0.55 -0.8 3,312,744 + Pf6N2E2_2824 0.65 -1.8 3,312,843 + Pf6N2E2_2824 0.68 -2.6 3,312,843 + Pf6N2E2_2824 0.68 -0.6 3,312,843 + Pf6N2E2_2824 0.68 -2.4 3,312,964 + Pf6N2E2_2824 0.72 +0.2 3,312,964 + Pf6N2E2_2824 0.72 -1.6 3,312,968 + Pf6N2E2_2824 0.72 -1.2 3,312,968 + Pf6N2E2_2824 0.72 -2.3 3,312,968 + Pf6N2E2_2824 0.72 -2.6 3,312,968 + Pf6N2E2_2824 0.72 -1.6 3,312,969 - Pf6N2E2_2824 0.72 -1.4 3,312,969 - Pf6N2E2_2824 0.72 +0.2 3,313,010 + Pf6N2E2_2824 0.73 -1.1 3,313,010 + Pf6N2E2_2824 0.73 -1.5 3,313,010 + Pf6N2E2_2824 0.73 -2.9 3,313,011 - Pf6N2E2_2824 0.73 -1.0 3,313,064 + Pf6N2E2_2824 0.75 -2.6 3,313,065 - Pf6N2E2_2824 0.75 -1.1 3,313,065 - Pf6N2E2_2824 0.75 -1.6 3,313,287 - Pf6N2E2_2824 0.82 -2.2 3,313,370 + Pf6N2E2_2824 0.85 -1.6 3,313,472 + Pf6N2E2_2824 0.88 -2.3 3,313,472 + Pf6N2E2_2824 0.88 -1.3 3,313,472 + Pf6N2E2_2824 0.88 -0.6 3,313,597 + -1.3 3,313,598 - -0.5 3,314,113 + Pf6N2E2_2825 0.18 -1.8 3,314,114 - Pf6N2E2_2825 0.18 +0.2 3,314,125 + Pf6N2E2_2825 0.19 +0.8 3,314,266 + Pf6N2E2_2825 0.29 -0.8 3,314,324 - Pf6N2E2_2825 0.33 -1.0 3,314,389 + Pf6N2E2_2825 0.37 -0.5 3,314,449 + Pf6N2E2_2825 0.41 +0.8
Or see this region's nucleotide sequence