Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2509

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2507 and Pf6N2E2_2508 are separated by 54 nucleotidesPf6N2E2_2508 and Pf6N2E2_2509 are separated by 182 nucleotidesPf6N2E2_2509 and Pf6N2E2_2510 are separated by 485 nucleotides Pf6N2E2_2507 - Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-), at 2,960,053 to 2,960,700 _2507 Pf6N2E2_2508 - hypothetical protein, at 2,960,755 to 2,960,886 _2508 Pf6N2E2_2509 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 2,961,069 to 2,961,572 _2509 Pf6N2E2_2510 - Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase, at 2,962,058 to 2,963,188 _2510 Position (kb) 2961 2962Strain fitness (log2 ratio) -3 -2 -1 0 1at 2960.098 kb on + strandat 2960.185 kb on + strand, within Pf6N2E2_2507at 2960.186 kb on - strand, within Pf6N2E2_2507at 2960.186 kb on - strand, within Pf6N2E2_2507at 2960.191 kb on - strand, within Pf6N2E2_2507at 2960.252 kb on + strand, within Pf6N2E2_2507at 2960.253 kb on - strand, within Pf6N2E2_2507at 2960.276 kb on + strand, within Pf6N2E2_2507at 2960.277 kb on - strand, within Pf6N2E2_2507at 2960.279 kb on - strand, within Pf6N2E2_2507at 2960.279 kb on - strand, within Pf6N2E2_2507at 2960.363 kb on - strand, within Pf6N2E2_2507at 2960.363 kb on - strand, within Pf6N2E2_2507at 2960.363 kb on - strand, within Pf6N2E2_2507at 2960.452 kb on - strand, within Pf6N2E2_2507at 2960.452 kb on - strand, within Pf6N2E2_2507at 2960.520 kb on + strand, within Pf6N2E2_2507at 2960.521 kb on - strand, within Pf6N2E2_2507at 2960.621 kb on + strand, within Pf6N2E2_2507at 2960.660 kb on - strandat 2960.722 kb on + strandat 2960.723 kb on - strandat 2960.732 kb on - strandat 2960.732 kb on - strandat 2960.782 kb on + strand, within Pf6N2E2_2508at 2960.782 kb on + strand, within Pf6N2E2_2508at 2960.782 kb on + strandat 2960.782 kb on + strand, within Pf6N2E2_2508at 2960.783 kb on - strand, within Pf6N2E2_2508at 2960.783 kb on - strand, within Pf6N2E2_2508at 2960.783 kb on - strand, within Pf6N2E2_2508at 2960.783 kb on - strand, within Pf6N2E2_2508at 2960.783 kb on - strand, within Pf6N2E2_2508at 2960.783 kb on - strand, within Pf6N2E2_2508at 2960.959 kb on - strandat 2960.959 kb on - strandat 2960.988 kb on + strandat 2960.999 kb on + strandat 2961.000 kb on - strandat 2961.000 kb on - strandat 2961.023 kb on - strandat 2961.113 kb on + strandat 2961.114 kb on - strandat 2961.217 kb on - strand, within Pf6N2E2_2509at 2961.342 kb on - strand, within Pf6N2E2_2509at 2961.632 kb on - strandat 2961.873 kb on - strandat 2961.972 kb on - strandat 2962.002 kb on + strandat 2962.042 kb on - strandat 2962.256 kb on + strand, within Pf6N2E2_2510at 2962.258 kb on + strand, within Pf6N2E2_2510at 2962.262 kb on - strand, within Pf6N2E2_2510at 2962.364 kb on + strand, within Pf6N2E2_2510at 2962.365 kb on - strand, within Pf6N2E2_2510at 2962.365 kb on - strand, within Pf6N2E2_2510at 2962.370 kb on - strand, within Pf6N2E2_2510at 2962.370 kb on - strand, within Pf6N2E2_2510at 2962.386 kb on - strand, within Pf6N2E2_2510at 2962.449 kb on - strand, within Pf6N2E2_2510at 2962.449 kb on - strand, within Pf6N2E2_2510

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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2,960,098 + -0.2
2,960,185 + Pf6N2E2_2507 0.20 -0.9
2,960,186 - Pf6N2E2_2507 0.21 -2.2
2,960,186 - Pf6N2E2_2507 0.21 -2.1
2,960,191 - Pf6N2E2_2507 0.21 +1.1
2,960,252 + Pf6N2E2_2507 0.31 +0.4
2,960,253 - Pf6N2E2_2507 0.31 -1.3
2,960,276 + Pf6N2E2_2507 0.34 -1.2
2,960,277 - Pf6N2E2_2507 0.35 -0.3
2,960,279 - Pf6N2E2_2507 0.35 -0.3
2,960,279 - Pf6N2E2_2507 0.35 -0.8
2,960,363 - Pf6N2E2_2507 0.48 -0.3
2,960,363 - Pf6N2E2_2507 0.48 +0.1
2,960,363 - Pf6N2E2_2507 0.48 -0.9
2,960,452 - Pf6N2E2_2507 0.62 +0.8
2,960,452 - Pf6N2E2_2507 0.62 -2.8
2,960,520 + Pf6N2E2_2507 0.72 -2.2
2,960,521 - Pf6N2E2_2507 0.72 -2.0
2,960,621 + Pf6N2E2_2507 0.88 -2.1
2,960,660 - -1.3
2,960,722 + +0.2
2,960,723 - +0.7
2,960,732 - -1.2
2,960,732 - -0.5
2,960,782 + Pf6N2E2_2508 0.20 +0.5
2,960,782 + Pf6N2E2_2508 0.20 +0.3
2,960,782 + +0.1
2,960,782 + Pf6N2E2_2508 0.20 +0.9
2,960,783 - Pf6N2E2_2508 0.21 +0.9
2,960,783 - Pf6N2E2_2508 0.21 -1.8
2,960,783 - Pf6N2E2_2508 0.21 +1.1
2,960,783 - Pf6N2E2_2508 0.21 +1.7
2,960,783 - Pf6N2E2_2508 0.21 -2.7
2,960,783 - Pf6N2E2_2508 0.21 -0.0
2,960,959 - -2.1
2,960,959 - +0.5
2,960,988 + -1.1
2,960,999 + +0.2
2,961,000 - +0.7
2,961,000 - -0.6
2,961,023 - -0.5
2,961,113 + -1.0
2,961,114 - -0.9
2,961,217 - Pf6N2E2_2509 0.29 -2.4
2,961,342 - Pf6N2E2_2509 0.54 -0.9
2,961,632 - -1.5
2,961,873 - -1.3
2,961,972 - -0.7
2,962,002 + +0.7
2,962,042 - +0.7
2,962,256 + Pf6N2E2_2510 0.18 +0.3
2,962,258 + Pf6N2E2_2510 0.18 +0.7
2,962,262 - Pf6N2E2_2510 0.18 -0.7
2,962,364 + Pf6N2E2_2510 0.27 -0.9
2,962,365 - Pf6N2E2_2510 0.27 -0.5
2,962,365 - Pf6N2E2_2510 0.27 -2.4
2,962,370 - Pf6N2E2_2510 0.28 -0.5
2,962,370 - Pf6N2E2_2510 0.28 -1.1
2,962,386 - Pf6N2E2_2510 0.29 +0.1
2,962,449 - Pf6N2E2_2510 0.35 -0.3
2,962,449 - Pf6N2E2_2510 0.35 -1.1

Or see this region's nucleotide sequence