Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2403 and Pf6N2E2_2404 are separated by 335 nucleotides Pf6N2E2_2404 and Pf6N2E2_2405 are separated by 140 nucleotides Pf6N2E2_2405 and Pf6N2E2_2406 are separated by 70 nucleotides Pf6N2E2_2406 and Pf6N2E2_2407 are separated by 97 nucleotides
Pf6N2E2_2403 - Pyoverdine chromophore precursor synthetase PvdL, at 2,841,860 to 2,854,846
_2403
Pf6N2E2_2404 - Sigma factor PvdS, controling pyoverdin biosynthesis, at 2,855,182 to 2,855,676
_2404
Pf6N2E2_2405 - Hypothetical protein PvdY @ Siderophore synthetase small component, acetyltransferase, at 2,855,817 to 2,856,830
_2405
Pf6N2E2_2406 - Periplasmic binding protein, at 2,856,901 to 2,857,698
_2406
Pf6N2E2_2407 - Acyclic terpenes utilization regulator AtuR, TetR family, at 2,857,796 to 2,858,422
_2407
Position (kb)
2855
2856
2857 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2854.910 kb on + strand at 2854.911 kb on - strand at 2854.911 kb on - strand at 2854.911 kb on - strand at 2854.911 kb on - strand at 2854.915 kb on - strand at 2855.103 kb on - strand at 2855.103 kb on - strand at 2855.141 kb on + strand at 2855.142 kb on - strand at 2855.169 kb on - strand at 2855.323 kb on + strand, within Pf6N2E2_2404 at 2855.323 kb on + strand, within Pf6N2E2_2404 at 2855.323 kb on + strand, within Pf6N2E2_2404 at 2855.324 kb on - strand, within Pf6N2E2_2404 at 2855.324 kb on - strand, within Pf6N2E2_2404 at 2855.324 kb on - strand, within Pf6N2E2_2404 at 2855.324 kb on - strand, within Pf6N2E2_2404 at 2855.324 kb on - strand, within Pf6N2E2_2404 at 2855.389 kb on + strand, within Pf6N2E2_2404 at 2855.390 kb on - strand, within Pf6N2E2_2404 at 2855.518 kb on + strand, within Pf6N2E2_2404 at 2855.533 kb on + strand, within Pf6N2E2_2404 at 2855.533 kb on + strand, within Pf6N2E2_2404 at 2855.533 kb on + strand, within Pf6N2E2_2404 at 2855.534 kb on - strand, within Pf6N2E2_2404 at 2855.534 kb on - strand, within Pf6N2E2_2404 at 2855.534 kb on - strand, within Pf6N2E2_2404 at 2855.534 kb on - strand, within Pf6N2E2_2404 at 2855.534 kb on - strand, within Pf6N2E2_2404 at 2855.658 kb on + strand at 2855.818 kb on + strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2856.004 kb on + strand, within Pf6N2E2_2405 at 2856.004 kb on + strand, within Pf6N2E2_2405 at 2856.005 kb on - strand, within Pf6N2E2_2405 at 2856.091 kb on + strand, within Pf6N2E2_2405 at 2856.091 kb on + strand, within Pf6N2E2_2405 at 2856.092 kb on - strand, within Pf6N2E2_2405 at 2856.092 kb on - strand, within Pf6N2E2_2405 at 2856.107 kb on - strand, within Pf6N2E2_2405 at 2856.139 kb on + strand, within Pf6N2E2_2405 at 2856.140 kb on - strand, within Pf6N2E2_2405 at 2856.140 kb on - strand, within Pf6N2E2_2405 at 2856.151 kb on + strand, within Pf6N2E2_2405 at 2856.152 kb on - strand, within Pf6N2E2_2405 at 2856.223 kb on + strand, within Pf6N2E2_2405 at 2856.224 kb on - strand, within Pf6N2E2_2405 at 2856.483 kb on + strand, within Pf6N2E2_2405 at 2856.484 kb on - strand, within Pf6N2E2_2405 at 2856.629 kb on - strand, within Pf6N2E2_2405 at 2856.845 kb on + strand at 2857.046 kb on + strand, within Pf6N2E2_2406 at 2857.047 kb on - strand, within Pf6N2E2_2406 at 2857.109 kb on + strand, within Pf6N2E2_2406 at 2857.109 kb on + strand, within Pf6N2E2_2406 at 2857.109 kb on + strand, within Pf6N2E2_2406 at 2857.109 kb on + strand, within Pf6N2E2_2406 at 2857.110 kb on - strand, within Pf6N2E2_2406 at 2857.110 kb on - strand, within Pf6N2E2_2406 at 2857.110 kb on - strand, within Pf6N2E2_2406 at 2857.110 kb on - strand, within Pf6N2E2_2406 at 2857.122 kb on - strand, within Pf6N2E2_2406 at 2857.190 kb on + strand, within Pf6N2E2_2406 at 2857.190 kb on + strand, within Pf6N2E2_2406 at 2857.190 kb on + strand, within Pf6N2E2_2406 at 2857.191 kb on - strand, within Pf6N2E2_2406 at 2857.191 kb on - strand, within Pf6N2E2_2406 at 2857.191 kb on - strand, within Pf6N2E2_2406 at 2857.208 kb on + strand, within Pf6N2E2_2406 at 2857.208 kb on + strand, within Pf6N2E2_2406 at 2857.208 kb on + strand, within Pf6N2E2_2406 at 2857.209 kb on - strand, within Pf6N2E2_2406 at 2857.209 kb on - strand, within Pf6N2E2_2406 at 2857.209 kb on - strand, within Pf6N2E2_2406 at 2857.209 kb on - strand, within Pf6N2E2_2406 at 2857.257 kb on - strand, within Pf6N2E2_2406 at 2857.257 kb on - strand, within Pf6N2E2_2406 at 2857.576 kb on - strand, within Pf6N2E2_2406 at 2857.576 kb on - strand, within Pf6N2E2_2406 at 2857.577 kb on + strand, within Pf6N2E2_2406 at 2857.578 kb on - strand, within Pf6N2E2_2406 at 2857.578 kb on - strand, within Pf6N2E2_2406 at 2857.578 kb on - strand, within Pf6N2E2_2406 at 2857.578 kb on - strand, within Pf6N2E2_2406 at 2857.578 kb on - strand, within Pf6N2E2_2406 at 2857.729 kb on + strand at 2857.730 kb on - strand at 2857.742 kb on - strand at 2857.759 kb on + strand at 2857.760 kb on - strand at 2857.781 kb on + strand at 2857.782 kb on - strand at 2857.782 kb on - strand at 2857.782 kb on - strand at 2857.782 kb on - strand at 2857.786 kb on + strand at 2857.786 kb on + strand at 2857.786 kb on + strand at 2857.786 kb on + strand at 2857.787 kb on - strand at 2857.797 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 2,854,910 + -0.1 2,854,911 - +1.0 2,854,911 - +0.1 2,854,911 - +0.9 2,854,911 - +0.5 2,854,915 - +2.4 2,855,103 - +0.6 2,855,103 - -0.8 2,855,141 + +1.5 2,855,142 - +2.0 2,855,169 - +0.5 2,855,323 + Pf6N2E2_2404 0.28 +2.9 2,855,323 + Pf6N2E2_2404 0.28 +1.7 2,855,323 + Pf6N2E2_2404 0.28 +1.6 2,855,324 - Pf6N2E2_2404 0.29 +1.2 2,855,324 - Pf6N2E2_2404 0.29 +1.2 2,855,324 - Pf6N2E2_2404 0.29 +0.4 2,855,324 - Pf6N2E2_2404 0.29 +0.5 2,855,324 - Pf6N2E2_2404 0.29 +0.6 2,855,389 + Pf6N2E2_2404 0.42 +0.5 2,855,390 - Pf6N2E2_2404 0.42 +1.6 2,855,518 + Pf6N2E2_2404 0.68 +0.5 2,855,533 + Pf6N2E2_2404 0.71 +1.4 2,855,533 + Pf6N2E2_2404 0.71 -0.5 2,855,533 + Pf6N2E2_2404 0.71 +1.6 2,855,534 - Pf6N2E2_2404 0.71 -2.3 2,855,534 - Pf6N2E2_2404 0.71 +0.9 2,855,534 - Pf6N2E2_2404 0.71 +0.9 2,855,534 - Pf6N2E2_2404 0.71 +1.9 2,855,534 - Pf6N2E2_2404 0.71 +1.5 2,855,658 + -1.0 2,855,818 + +0.0 2,855,819 - +0.0 2,855,819 - +0.9 2,855,819 - -0.3 2,855,819 - -0.4 2,855,819 - -0.4 2,855,819 - +0.2 2,855,819 - -1.2 2,855,819 - +0.6 2,856,004 + Pf6N2E2_2405 0.18 +1.3 2,856,004 + Pf6N2E2_2405 0.18 +1.9 2,856,005 - Pf6N2E2_2405 0.19 +2.1 2,856,091 + Pf6N2E2_2405 0.27 +1.7 2,856,091 + Pf6N2E2_2405 0.27 +0.4 2,856,092 - Pf6N2E2_2405 0.27 +1.0 2,856,092 - Pf6N2E2_2405 0.27 +1.0 2,856,107 - Pf6N2E2_2405 0.29 +0.1 2,856,139 + Pf6N2E2_2405 0.32 +2.3 2,856,140 - Pf6N2E2_2405 0.32 +1.0 2,856,140 - Pf6N2E2_2405 0.32 +0.8 2,856,151 + Pf6N2E2_2405 0.33 +2.2 2,856,152 - Pf6N2E2_2405 0.33 +0.7 2,856,223 + Pf6N2E2_2405 0.40 +1.3 2,856,224 - Pf6N2E2_2405 0.40 +0.1 2,856,483 + Pf6N2E2_2405 0.66 +2.0 2,856,484 - Pf6N2E2_2405 0.66 +1.1 2,856,629 - Pf6N2E2_2405 0.80 +1.1 2,856,845 + +0.6 2,857,046 + Pf6N2E2_2406 0.18 +0.4 2,857,047 - Pf6N2E2_2406 0.18 +0.2 2,857,109 + Pf6N2E2_2406 0.26 +0.1 2,857,109 + Pf6N2E2_2406 0.26 +1.3 2,857,109 + Pf6N2E2_2406 0.26 -0.7 2,857,109 + Pf6N2E2_2406 0.26 +1.0 2,857,110 - Pf6N2E2_2406 0.26 +0.5 2,857,110 - Pf6N2E2_2406 0.26 +0.3 2,857,110 - Pf6N2E2_2406 0.26 +0.2 2,857,110 - Pf6N2E2_2406 0.26 +0.9 2,857,122 - Pf6N2E2_2406 0.28 +2.4 2,857,190 + Pf6N2E2_2406 0.36 -0.4 2,857,190 + Pf6N2E2_2406 0.36 -0.0 2,857,190 + Pf6N2E2_2406 0.36 -0.1 2,857,191 - Pf6N2E2_2406 0.36 +0.6 2,857,191 - Pf6N2E2_2406 0.36 +0.6 2,857,191 - Pf6N2E2_2406 0.36 +1.6 2,857,208 + Pf6N2E2_2406 0.38 -0.3 2,857,208 + Pf6N2E2_2406 0.38 +0.6 2,857,208 + Pf6N2E2_2406 0.38 -1.0 2,857,209 - Pf6N2E2_2406 0.39 +2.3 2,857,209 - Pf6N2E2_2406 0.39 +0.3 2,857,209 - Pf6N2E2_2406 0.39 +0.5 2,857,209 - Pf6N2E2_2406 0.39 -1.4 2,857,257 - Pf6N2E2_2406 0.45 +2.0 2,857,257 - Pf6N2E2_2406 0.45 +0.1 2,857,576 - Pf6N2E2_2406 0.85 +0.0 2,857,576 - Pf6N2E2_2406 0.85 +0.4 2,857,577 + Pf6N2E2_2406 0.85 -0.1 2,857,578 - Pf6N2E2_2406 0.85 +0.1 2,857,578 - Pf6N2E2_2406 0.85 -1.4 2,857,578 - Pf6N2E2_2406 0.85 -0.3 2,857,578 - Pf6N2E2_2406 0.85 +0.7 2,857,578 - Pf6N2E2_2406 0.85 +0.4 2,857,729 + +1.5 2,857,730 - +1.2 2,857,742 - -0.5 2,857,759 + +0.2 2,857,760 - +0.7 2,857,781 + +0.2 2,857,782 - +0.4 2,857,782 - -1.4 2,857,782 - +0.1 2,857,782 - -0.5 2,857,786 + -0.8 2,857,786 + +1.2 2,857,786 + +0.0 2,857,786 + -1.0 2,857,787 - -1.2 2,857,797 + +1.0
Or see this region's nucleotide sequence