Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2404

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2403 and Pf6N2E2_2404 are separated by 335 nucleotidesPf6N2E2_2404 and Pf6N2E2_2405 are separated by 140 nucleotides Pf6N2E2_2403 - Pyoverdine chromophore precursor synthetase PvdL, at 2,841,860 to 2,854,846 _2403 Pf6N2E2_2404 - Sigma factor PvdS, controling pyoverdin biosynthesis, at 2,855,182 to 2,855,676 _2404 Pf6N2E2_2405 - Hypothetical protein PvdY @ Siderophore synthetase small component, acetyltransferase, at 2,855,817 to 2,856,830 _2405 Position (kb) 2855 2856Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2854.207 kb on - strandat 2854.207 kb on - strandat 2854.207 kb on - strandat 2854.344 kb on + strandat 2854.344 kb on + strandat 2854.344 kb on + strandat 2854.345 kb on - strandat 2854.345 kb on - strandat 2854.345 kb on - strandat 2854.345 kb on - strandat 2854.590 kb on + strandat 2854.591 kb on - strandat 2854.617 kb on + strandat 2854.691 kb on - strandat 2854.910 kb on + strandat 2854.911 kb on - strandat 2854.911 kb on - strandat 2854.911 kb on - strandat 2854.911 kb on - strandat 2854.915 kb on - strandat 2855.103 kb on - strandat 2855.103 kb on - strandat 2855.141 kb on + strandat 2855.142 kb on - strandat 2855.169 kb on - strandat 2855.323 kb on + strand, within Pf6N2E2_2404at 2855.323 kb on + strand, within Pf6N2E2_2404at 2855.323 kb on + strand, within Pf6N2E2_2404at 2855.324 kb on - strand, within Pf6N2E2_2404at 2855.324 kb on - strand, within Pf6N2E2_2404at 2855.324 kb on - strand, within Pf6N2E2_2404at 2855.324 kb on - strand, within Pf6N2E2_2404at 2855.324 kb on - strand, within Pf6N2E2_2404at 2855.389 kb on + strand, within Pf6N2E2_2404at 2855.390 kb on - strand, within Pf6N2E2_2404at 2855.518 kb on + strand, within Pf6N2E2_2404at 2855.533 kb on + strand, within Pf6N2E2_2404at 2855.533 kb on + strand, within Pf6N2E2_2404at 2855.533 kb on + strand, within Pf6N2E2_2404at 2855.534 kb on - strand, within Pf6N2E2_2404at 2855.534 kb on - strand, within Pf6N2E2_2404at 2855.534 kb on - strand, within Pf6N2E2_2404at 2855.534 kb on - strand, within Pf6N2E2_2404at 2855.534 kb on - strand, within Pf6N2E2_2404at 2855.658 kb on + strandat 2855.818 kb on + strandat 2855.819 kb on - strandat 2855.819 kb on - strandat 2855.819 kb on - strandat 2855.819 kb on - strandat 2855.819 kb on - strandat 2855.819 kb on - strandat 2855.819 kb on - strandat 2855.819 kb on - strandat 2856.004 kb on + strand, within Pf6N2E2_2405at 2856.004 kb on + strand, within Pf6N2E2_2405at 2856.005 kb on - strand, within Pf6N2E2_2405at 2856.091 kb on + strand, within Pf6N2E2_2405at 2856.091 kb on + strand, within Pf6N2E2_2405at 2856.092 kb on - strand, within Pf6N2E2_2405at 2856.092 kb on - strand, within Pf6N2E2_2405at 2856.107 kb on - strand, within Pf6N2E2_2405at 2856.139 kb on + strand, within Pf6N2E2_2405at 2856.140 kb on - strand, within Pf6N2E2_2405at 2856.140 kb on - strand, within Pf6N2E2_2405at 2856.151 kb on + strand, within Pf6N2E2_2405at 2856.152 kb on - strand, within Pf6N2E2_2405at 2856.223 kb on + strand, within Pf6N2E2_2405at 2856.224 kb on - strand, within Pf6N2E2_2405at 2856.483 kb on + strand, within Pf6N2E2_2405at 2856.484 kb on - strand, within Pf6N2E2_2405at 2856.629 kb on - strand, within Pf6N2E2_2405

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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2,854,207 - +1.0
2,854,207 - +2.6
2,854,207 - +2.8
2,854,344 + -0.1
2,854,344 + +1.6
2,854,344 + -1.2
2,854,345 - +1.7
2,854,345 - -1.3
2,854,345 - +1.3
2,854,345 - +1.6
2,854,590 + +0.2
2,854,591 - +0.7
2,854,617 + -0.5
2,854,691 - +0.3
2,854,910 + -0.1
2,854,911 - +1.0
2,854,911 - +0.1
2,854,911 - +0.9
2,854,911 - +0.5
2,854,915 - +2.4
2,855,103 - +0.6
2,855,103 - -0.8
2,855,141 + +1.5
2,855,142 - +2.0
2,855,169 - +0.5
2,855,323 + Pf6N2E2_2404 0.28 +2.9
2,855,323 + Pf6N2E2_2404 0.28 +1.7
2,855,323 + Pf6N2E2_2404 0.28 +1.6
2,855,324 - Pf6N2E2_2404 0.29 +1.2
2,855,324 - Pf6N2E2_2404 0.29 +1.2
2,855,324 - Pf6N2E2_2404 0.29 +0.4
2,855,324 - Pf6N2E2_2404 0.29 +0.5
2,855,324 - Pf6N2E2_2404 0.29 +0.6
2,855,389 + Pf6N2E2_2404 0.42 +0.5
2,855,390 - Pf6N2E2_2404 0.42 +1.6
2,855,518 + Pf6N2E2_2404 0.68 +0.5
2,855,533 + Pf6N2E2_2404 0.71 +1.4
2,855,533 + Pf6N2E2_2404 0.71 -0.5
2,855,533 + Pf6N2E2_2404 0.71 +1.6
2,855,534 - Pf6N2E2_2404 0.71 -2.3
2,855,534 - Pf6N2E2_2404 0.71 +0.9
2,855,534 - Pf6N2E2_2404 0.71 +0.9
2,855,534 - Pf6N2E2_2404 0.71 +1.9
2,855,534 - Pf6N2E2_2404 0.71 +1.5
2,855,658 + -1.0
2,855,818 + +0.0
2,855,819 - +0.0
2,855,819 - +0.9
2,855,819 - -0.3
2,855,819 - -0.4
2,855,819 - -0.4
2,855,819 - +0.2
2,855,819 - -1.2
2,855,819 - +0.6
2,856,004 + Pf6N2E2_2405 0.18 +1.3
2,856,004 + Pf6N2E2_2405 0.18 +1.9
2,856,005 - Pf6N2E2_2405 0.19 +2.1
2,856,091 + Pf6N2E2_2405 0.27 +1.7
2,856,091 + Pf6N2E2_2405 0.27 +0.4
2,856,092 - Pf6N2E2_2405 0.27 +1.0
2,856,092 - Pf6N2E2_2405 0.27 +1.0
2,856,107 - Pf6N2E2_2405 0.29 +0.1
2,856,139 + Pf6N2E2_2405 0.32 +2.3
2,856,140 - Pf6N2E2_2405 0.32 +1.0
2,856,140 - Pf6N2E2_2405 0.32 +0.8
2,856,151 + Pf6N2E2_2405 0.33 +2.2
2,856,152 - Pf6N2E2_2405 0.33 +0.7
2,856,223 + Pf6N2E2_2405 0.40 +1.3
2,856,224 - Pf6N2E2_2405 0.40 +0.1
2,856,483 + Pf6N2E2_2405 0.66 +2.0
2,856,484 - Pf6N2E2_2405 0.66 +1.1
2,856,629 - Pf6N2E2_2405 0.80 +1.1

Or see this region's nucleotide sequence