Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2335

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2334 and Pf6N2E2_2335 are separated by 2 nucleotidesPf6N2E2_2335 and Pf6N2E2_2336 are separated by 264 nucleotides Pf6N2E2_2334 - Chromosome partition protein smc, at 2,761,901 to 2,765,389 _2334 Pf6N2E2_2335 - Transcriptional regulator, GntR family, at 2,765,392 to 2,766,051 _2335 Pf6N2E2_2336 - Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4), at 2,766,316 to 2,767,770 _2336 Position (kb) 2765 2766 2767Strain fitness (log2 ratio) -3 -2 -1 0 1at 2764.509 kb on + strand, within Pf6N2E2_2334at 2764.509 kb on + strand, within Pf6N2E2_2334at 2764.509 kb on + strand, within Pf6N2E2_2334at 2764.510 kb on - strand, within Pf6N2E2_2334at 2764.510 kb on - strand, within Pf6N2E2_2334at 2764.510 kb on - strand, within Pf6N2E2_2334at 2764.728 kb on + strand, within Pf6N2E2_2334at 2764.728 kb on + strand, within Pf6N2E2_2334at 2764.729 kb on - strand, within Pf6N2E2_2334at 2764.729 kb on - strand, within Pf6N2E2_2334at 2764.729 kb on - strand, within Pf6N2E2_2334at 2764.729 kb on - strand, within Pf6N2E2_2334at 2764.737 kb on + strand, within Pf6N2E2_2334at 2764.738 kb on - strand, within Pf6N2E2_2334at 2764.873 kb on - strand, within Pf6N2E2_2334at 2764.873 kb on - strand, within Pf6N2E2_2334at 2764.882 kb on + strand, within Pf6N2E2_2334at 2764.968 kb on + strand, within Pf6N2E2_2334at 2764.968 kb on + strand, within Pf6N2E2_2334at 2764.969 kb on - strand, within Pf6N2E2_2334at 2765.046 kb on + strandat 2765.046 kb on + strandat 2765.047 kb on - strandat 2765.047 kb on - strandat 2765.106 kb on + strandat 2765.107 kb on - strandat 2765.269 kb on + strandat 2765.318 kb on - strandat 2765.561 kb on + strand, within Pf6N2E2_2335at 2765.561 kb on + strand, within Pf6N2E2_2335at 2765.609 kb on + strand, within Pf6N2E2_2335at 2765.610 kb on - strand, within Pf6N2E2_2335at 2765.610 kb on - strand, within Pf6N2E2_2335at 2765.769 kb on - strand, within Pf6N2E2_2335at 2765.783 kb on + strand, within Pf6N2E2_2335at 2765.783 kb on + strand, within Pf6N2E2_2335at 2765.783 kb on + strand, within Pf6N2E2_2335at 2765.783 kb on + strand, within Pf6N2E2_2335at 2765.784 kb on - strand, within Pf6N2E2_2335at 2765.784 kb on - strand, within Pf6N2E2_2335at 2765.784 kb on - strand, within Pf6N2E2_2335at 2765.784 kb on - strand, within Pf6N2E2_2335at 2766.107 kb on - strandat 2766.107 kb on - strandat 2766.182 kb on + strandat 2766.191 kb on + strandat 2766.191 kb on + strandat 2766.191 kb on + strandat 2766.191 kb on + strandat 2766.191 kb on + strandat 2766.192 kb on - strandat 2766.192 kb on - strandat 2766.231 kb on - strandat 2766.231 kb on - strandat 2766.287 kb on - strandat 2766.294 kb on + strandat 2766.294 kb on + strandat 2766.295 kb on - strandat 2766.295 kb on - strandat 2766.295 kb on - strandat 2766.295 kb on - strandat 2766.295 kb on - strandat 2766.349 kb on - strandat 2766.388 kb on + strandat 2766.389 kb on - strandat 2766.389 kb on - strandat 2766.392 kb on + strandat 2766.392 kb on + strandat 2766.393 kb on - strandat 2766.408 kb on + strandat 2766.408 kb on + strandat 2766.408 kb on + strandat 2766.408 kb on + strandat 2766.409 kb on - strandat 2766.409 kb on - strandat 2766.409 kb on - strandat 2766.409 kb on - strandat 2766.949 kb on + strand, within Pf6N2E2_2336at 2766.950 kb on - strand, within Pf6N2E2_2336at 2766.950 kb on - strand, within Pf6N2E2_2336at 2766.950 kb on - strand, within Pf6N2E2_2336at 2766.950 kb on - strand, within Pf6N2E2_2336at 2766.950 kb on - strand, within Pf6N2E2_2336at 2766.958 kb on + strand, within Pf6N2E2_2336at 2766.959 kb on - strand, within Pf6N2E2_2336at 2767.042 kb on + strand, within Pf6N2E2_2336at 2767.042 kb on + strand, within Pf6N2E2_2336at 2767.043 kb on - strand, within Pf6N2E2_2336at 2767.043 kb on - strand, within Pf6N2E2_2336

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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2,764,509 + Pf6N2E2_2334 0.75 -0.6
2,764,509 + Pf6N2E2_2334 0.75 -2.0
2,764,509 + Pf6N2E2_2334 0.75 -0.7
2,764,510 - Pf6N2E2_2334 0.75 +0.3
2,764,510 - Pf6N2E2_2334 0.75 -0.0
2,764,510 - Pf6N2E2_2334 0.75 +0.5
2,764,728 + Pf6N2E2_2334 0.81 +0.1
2,764,728 + Pf6N2E2_2334 0.81 -0.5
2,764,729 - Pf6N2E2_2334 0.81 +0.6
2,764,729 - Pf6N2E2_2334 0.81 +0.1
2,764,729 - Pf6N2E2_2334 0.81 +0.0
2,764,729 - Pf6N2E2_2334 0.81 -0.6
2,764,737 + Pf6N2E2_2334 0.81 -2.1
2,764,738 - Pf6N2E2_2334 0.81 -1.4
2,764,873 - Pf6N2E2_2334 0.85 -0.8
2,764,873 - Pf6N2E2_2334 0.85 -1.8
2,764,882 + Pf6N2E2_2334 0.85 -0.4
2,764,968 + Pf6N2E2_2334 0.88 -2.6
2,764,968 + Pf6N2E2_2334 0.88 -3.2
2,764,969 - Pf6N2E2_2334 0.88 +0.5
2,765,046 + -1.9
2,765,046 + -0.4
2,765,047 - -0.4
2,765,047 - +0.4
2,765,106 + +1.0
2,765,107 - -1.6
2,765,269 + -1.4
2,765,318 - +0.6
2,765,561 + Pf6N2E2_2335 0.26 -0.2
2,765,561 + Pf6N2E2_2335 0.26 -0.8
2,765,609 + Pf6N2E2_2335 0.33 +0.2
2,765,610 - Pf6N2E2_2335 0.33 -2.2
2,765,610 - Pf6N2E2_2335 0.33 -0.4
2,765,769 - Pf6N2E2_2335 0.57 -0.8
2,765,783 + Pf6N2E2_2335 0.59 -1.1
2,765,783 + Pf6N2E2_2335 0.59 -0.6
2,765,783 + Pf6N2E2_2335 0.59 -0.7
2,765,783 + Pf6N2E2_2335 0.59 -1.9
2,765,784 - Pf6N2E2_2335 0.59 -1.1
2,765,784 - Pf6N2E2_2335 0.59 +0.6
2,765,784 - Pf6N2E2_2335 0.59 -0.2
2,765,784 - Pf6N2E2_2335 0.59 -1.3
2,766,107 - +0.1
2,766,107 - -0.1
2,766,182 + -1.5
2,766,191 + -1.4
2,766,191 + -0.2
2,766,191 + -1.6
2,766,191 + -0.4
2,766,191 + -2.5
2,766,192 - -0.6
2,766,192 - +0.2
2,766,231 - -0.6
2,766,231 - -0.4
2,766,287 - +0.6
2,766,294 + -0.9
2,766,294 + +0.2
2,766,295 - +0.3
2,766,295 - +0.3
2,766,295 - +0.2
2,766,295 - +1.7
2,766,295 - -0.4
2,766,349 - +0.2
2,766,388 + +1.2
2,766,389 - +0.1
2,766,389 - +0.4
2,766,392 + -0.9
2,766,392 + +1.4
2,766,393 - +1.2
2,766,408 + -2.8
2,766,408 + -0.5
2,766,408 + -1.1
2,766,408 + +0.2
2,766,409 - +0.5
2,766,409 - +0.1
2,766,409 - +1.4
2,766,409 - -2.0
2,766,949 + Pf6N2E2_2336 0.44 -0.8
2,766,950 - Pf6N2E2_2336 0.44 +1.6
2,766,950 - Pf6N2E2_2336 0.44 +1.0
2,766,950 - Pf6N2E2_2336 0.44 +0.6
2,766,950 - Pf6N2E2_2336 0.44 -0.1
2,766,950 - Pf6N2E2_2336 0.44 +1.1
2,766,958 + Pf6N2E2_2336 0.44 -0.1
2,766,959 - Pf6N2E2_2336 0.44 +0.1
2,767,042 + Pf6N2E2_2336 0.50 +0.1
2,767,042 + Pf6N2E2_2336 0.50 -0.9
2,767,043 - Pf6N2E2_2336 0.50 -0.6
2,767,043 - Pf6N2E2_2336 0.50 +0.3

Or see this region's nucleotide sequence