Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2278

Experiment: molybdate 0.25 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_2277 and Pf6N2E2_2278 are separated by 246 nucleotidesPf6N2E2_2278 and Pf6N2E2_2279 are separated by 10 nucleotidesPf6N2E2_2279 and Pf6N2E2_2280 are separated by 11 nucleotides Pf6N2E2_2277 - NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13), at 2,692,096 to 2,693,481 _2277 Pf6N2E2_2278 - Transcription-repair coupling factor, at 2,693,728 to 2,697,177 _2278 Pf6N2E2_2279 - FIG00954981: hypothetical protein, at 2,697,188 to 2,697,754 _2279 Pf6N2E2_2280 - COG0553: Superfamily II DNA/RNA helicases, SNF2 family, at 2,697,766 to 2,700,459 _2280 Position (kb) 2693 2694 2695 2696 2697 2698Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2692.865 kb on + strand, within Pf6N2E2_2277at 2692.874 kb on + strand, within Pf6N2E2_2277at 2692.874 kb on + strand, within Pf6N2E2_2277at 2693.582 kb on - strandat 2693.582 kb on - strandat 2693.686 kb on + strandat 2693.769 kb on + strandat 2693.769 kb on + strandat 2693.769 kb on + strandat 2693.770 kb on - strandat 2693.770 kb on - strandat 2693.960 kb on - strandat 2693.960 kb on - strandat 2694.061 kb on - strandat 2694.061 kb on - strandat 2694.068 kb on + strandat 2694.069 kb on - strandat 2694.069 kb on - strandat 2694.196 kb on + strand, within Pf6N2E2_2278at 2694.197 kb on - strand, within Pf6N2E2_2278at 2694.505 kb on + strand, within Pf6N2E2_2278at 2694.505 kb on + strand, within Pf6N2E2_2278at 2694.505 kb on + strand, within Pf6N2E2_2278at 2694.505 kb on + strand, within Pf6N2E2_2278at 2694.506 kb on - strand, within Pf6N2E2_2278at 2694.506 kb on - strand, within Pf6N2E2_2278at 2694.548 kb on - strand, within Pf6N2E2_2278at 2694.548 kb on - strand, within Pf6N2E2_2278at 2694.548 kb on - strand, within Pf6N2E2_2278at 2694.665 kb on + strand, within Pf6N2E2_2278at 2694.666 kb on - strand, within Pf6N2E2_2278at 2694.666 kb on - strand, within Pf6N2E2_2278at 2694.669 kb on - strand, within Pf6N2E2_2278at 2695.037 kb on + strand, within Pf6N2E2_2278at 2695.037 kb on + strand, within Pf6N2E2_2278at 2695.037 kb on + strand, within Pf6N2E2_2278at 2695.037 kb on + strand, within Pf6N2E2_2278at 2695.038 kb on - strand, within Pf6N2E2_2278at 2695.038 kb on - strand, within Pf6N2E2_2278at 2695.291 kb on + strand, within Pf6N2E2_2278at 2695.291 kb on + strand, within Pf6N2E2_2278at 2695.291 kb on + strand, within Pf6N2E2_2278at 2695.291 kb on + strand, within Pf6N2E2_2278at 2695.291 kb on + strand, within Pf6N2E2_2278at 2695.291 kb on + strand, within Pf6N2E2_2278at 2695.291 kb on + strand, within Pf6N2E2_2278at 2695.292 kb on - strand, within Pf6N2E2_2278at 2695.292 kb on - strand, within Pf6N2E2_2278at 2695.292 kb on - strand, within Pf6N2E2_2278at 2695.447 kb on + strand, within Pf6N2E2_2278at 2695.447 kb on + strand, within Pf6N2E2_2278at 2695.447 kb on + strand, within Pf6N2E2_2278at 2695.447 kb on + strand, within Pf6N2E2_2278at 2695.447 kb on + strand, within Pf6N2E2_2278at 2695.447 kb on + strand, within Pf6N2E2_2278at 2695.447 kb on + strand, within Pf6N2E2_2278at 2695.447 kb on + strand, within Pf6N2E2_2278at 2695.447 kb on + strand, within Pf6N2E2_2278at 2695.447 kb on + strand, within Pf6N2E2_2278at 2695.447 kb on + strand, within Pf6N2E2_2278at 2695.448 kb on - strand, within Pf6N2E2_2278at 2695.448 kb on - strand, within Pf6N2E2_2278at 2695.448 kb on - strand, within Pf6N2E2_2278at 2695.448 kb on - strand, within Pf6N2E2_2278at 2695.448 kb on - strand, within Pf6N2E2_2278at 2695.448 kb on - strand, within Pf6N2E2_2278at 2695.448 kb on - strand, within Pf6N2E2_2278at 2695.502 kb on - strand, within Pf6N2E2_2278at 2695.729 kb on + strand, within Pf6N2E2_2278at 2695.729 kb on + strand, within Pf6N2E2_2278at 2695.729 kb on + strand, within Pf6N2E2_2278at 2695.729 kb on + strand, within Pf6N2E2_2278at 2695.730 kb on - strand, within Pf6N2E2_2278at 2695.730 kb on - strand, within Pf6N2E2_2278at 2696.170 kb on + strand, within Pf6N2E2_2278at 2696.170 kb on + strand, within Pf6N2E2_2278at 2696.170 kb on + strand, within Pf6N2E2_2278at 2696.170 kb on + strand, within Pf6N2E2_2278at 2696.171 kb on - strand, within Pf6N2E2_2278at 2696.171 kb on - strand, within Pf6N2E2_2278at 2696.171 kb on - strand, within Pf6N2E2_2278at 2696.171 kb on - strand, within Pf6N2E2_2278at 2696.171 kb on - strand, within Pf6N2E2_2278at 2696.173 kb on + strand, within Pf6N2E2_2278at 2696.173 kb on + strand, within Pf6N2E2_2278at 2696.173 kb on + strand, within Pf6N2E2_2278at 2696.173 kb on + strand, within Pf6N2E2_2278at 2696.174 kb on - strand, within Pf6N2E2_2278at 2696.174 kb on - strand, within Pf6N2E2_2278at 2696.174 kb on - strand, within Pf6N2E2_2278at 2696.174 kb on - strand, within Pf6N2E2_2278at 2696.174 kb on - strand, within Pf6N2E2_2278at 2696.174 kb on - strand, within Pf6N2E2_2278at 2696.305 kb on + strand, within Pf6N2E2_2278at 2696.305 kb on + strand, within Pf6N2E2_2278at 2696.306 kb on - strand, within Pf6N2E2_2278at 2696.306 kb on - strand, within Pf6N2E2_2278at 2696.464 kb on + strand, within Pf6N2E2_2278at 2696.464 kb on + strand, within Pf6N2E2_2278at 2696.464 kb on + strand, within Pf6N2E2_2278at 2696.465 kb on - strand, within Pf6N2E2_2278at 2696.470 kb on + strand, within Pf6N2E2_2278at 2696.470 kb on + strand, within Pf6N2E2_2278at 2696.470 kb on + strand, within Pf6N2E2_2278at 2696.470 kb on + strand, within Pf6N2E2_2278at 2696.470 kb on + strand, within Pf6N2E2_2278at 2696.471 kb on - strand, within Pf6N2E2_2278at 2696.471 kb on - strand, within Pf6N2E2_2278at 2696.471 kb on - strand, within Pf6N2E2_2278at 2696.471 kb on - strand, within Pf6N2E2_2278at 2696.656 kb on + strand, within Pf6N2E2_2278at 2696.657 kb on - strand, within Pf6N2E2_2278at 2696.657 kb on - strand, within Pf6N2E2_2278at 2696.657 kb on - strand, within Pf6N2E2_2278at 2696.779 kb on + strand, within Pf6N2E2_2278at 2696.779 kb on + strand, within Pf6N2E2_2278at 2697.258 kb on - strand, within Pf6N2E2_2279at 2697.419 kb on + strand, within Pf6N2E2_2279at 2697.420 kb on - strand, within Pf6N2E2_2279at 2697.420 kb on - strand, within Pf6N2E2_2279at 2697.427 kb on - strand, within Pf6N2E2_2279at 2697.640 kb on + strand, within Pf6N2E2_2279at 2697.640 kb on + strand, within Pf6N2E2_2279at 2698.152 kb on - strand, within Pf6N2E2_2280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
remove
2,692,865 + Pf6N2E2_2277 0.55 -0.7
2,692,874 + Pf6N2E2_2277 0.56 +0.1
2,692,874 + Pf6N2E2_2277 0.56 -0.0
2,693,582 - +0.2
2,693,582 - -0.4
2,693,686 + +1.0
2,693,769 + -2.1
2,693,769 + -0.4
2,693,769 + -2.8
2,693,770 - -3.0
2,693,770 - -1.0
2,693,960 - -1.7
2,693,960 - -3.7
2,694,061 - -3.1
2,694,061 - -2.5
2,694,068 + -2.2
2,694,069 - -0.7
2,694,069 - -1.9
2,694,196 + Pf6N2E2_2278 0.14 -2.3
2,694,197 - Pf6N2E2_2278 0.14 -2.8
2,694,505 + Pf6N2E2_2278 0.23 -2.1
2,694,505 + Pf6N2E2_2278 0.23 -1.0
2,694,505 + Pf6N2E2_2278 0.23 +0.6
2,694,505 + Pf6N2E2_2278 0.23 -1.2
2,694,506 - Pf6N2E2_2278 0.23 -1.8
2,694,506 - Pf6N2E2_2278 0.23 -2.2
2,694,548 - Pf6N2E2_2278 0.24 -1.3
2,694,548 - Pf6N2E2_2278 0.24 -3.0
2,694,548 - Pf6N2E2_2278 0.24 -1.2
2,694,665 + Pf6N2E2_2278 0.27 -3.6
2,694,666 - Pf6N2E2_2278 0.27 -1.9
2,694,666 - Pf6N2E2_2278 0.27 -1.5
2,694,669 - Pf6N2E2_2278 0.27 -3.8
2,695,037 + Pf6N2E2_2278 0.38 -1.8
2,695,037 + Pf6N2E2_2278 0.38 -1.3
2,695,037 + Pf6N2E2_2278 0.38 -1.8
2,695,037 + Pf6N2E2_2278 0.38 -3.3
2,695,038 - Pf6N2E2_2278 0.38 -2.9
2,695,038 - Pf6N2E2_2278 0.38 -0.8
2,695,291 + Pf6N2E2_2278 0.45 -2.4
2,695,291 + Pf6N2E2_2278 0.45 -2.7
2,695,291 + Pf6N2E2_2278 0.45 -1.2
2,695,291 + Pf6N2E2_2278 0.45 -3.1
2,695,291 + Pf6N2E2_2278 0.45 -2.8
2,695,291 + Pf6N2E2_2278 0.45 -3.8
2,695,291 + Pf6N2E2_2278 0.45 -2.8
2,695,292 - Pf6N2E2_2278 0.45 -3.4
2,695,292 - Pf6N2E2_2278 0.45 -1.9
2,695,292 - Pf6N2E2_2278 0.45 -2.1
2,695,447 + Pf6N2E2_2278 0.50 -2.9
2,695,447 + Pf6N2E2_2278 0.50 -3.0
2,695,447 + Pf6N2E2_2278 0.50 -1.4
2,695,447 + Pf6N2E2_2278 0.50 -2.3
2,695,447 + Pf6N2E2_2278 0.50 -3.1
2,695,447 + Pf6N2E2_2278 0.50 -1.3
2,695,447 + Pf6N2E2_2278 0.50 -1.1
2,695,447 + Pf6N2E2_2278 0.50 -3.2
2,695,447 + Pf6N2E2_2278 0.50 -3.1
2,695,447 + Pf6N2E2_2278 0.50 -2.8
2,695,447 + Pf6N2E2_2278 0.50 -2.4
2,695,448 - Pf6N2E2_2278 0.50 -2.8
2,695,448 - Pf6N2E2_2278 0.50 -2.8
2,695,448 - Pf6N2E2_2278 0.50 -3.4
2,695,448 - Pf6N2E2_2278 0.50 -1.8
2,695,448 - Pf6N2E2_2278 0.50 -2.0
2,695,448 - Pf6N2E2_2278 0.50 -4.0
2,695,448 - Pf6N2E2_2278 0.50 -2.0
2,695,502 - Pf6N2E2_2278 0.51 -2.4
2,695,729 + Pf6N2E2_2278 0.58 -1.9
2,695,729 + Pf6N2E2_2278 0.58 -2.3
2,695,729 + Pf6N2E2_2278 0.58 -2.8
2,695,729 + Pf6N2E2_2278 0.58 -2.1
2,695,730 - Pf6N2E2_2278 0.58 -1.0
2,695,730 - Pf6N2E2_2278 0.58 -3.3
2,696,170 + Pf6N2E2_2278 0.71 -3.2
2,696,170 + Pf6N2E2_2278 0.71 -3.2
2,696,170 + Pf6N2E2_2278 0.71 -2.7
2,696,170 + Pf6N2E2_2278 0.71 -3.0
2,696,171 - Pf6N2E2_2278 0.71 -2.4
2,696,171 - Pf6N2E2_2278 0.71 -1.2
2,696,171 - Pf6N2E2_2278 0.71 -3.1
2,696,171 - Pf6N2E2_2278 0.71 -3.4
2,696,171 - Pf6N2E2_2278 0.71 -1.8
2,696,173 + Pf6N2E2_2278 0.71 -1.2
2,696,173 + Pf6N2E2_2278 0.71 -2.8
2,696,173 + Pf6N2E2_2278 0.71 -2.9
2,696,173 + Pf6N2E2_2278 0.71 -2.1
2,696,174 - Pf6N2E2_2278 0.71 -2.5
2,696,174 - Pf6N2E2_2278 0.71 -3.3
2,696,174 - Pf6N2E2_2278 0.71 -0.8
2,696,174 - Pf6N2E2_2278 0.71 -0.6
2,696,174 - Pf6N2E2_2278 0.71 -3.0
2,696,174 - Pf6N2E2_2278 0.71 -3.0
2,696,305 + Pf6N2E2_2278 0.75 -0.0
2,696,305 + Pf6N2E2_2278 0.75 -2.5
2,696,306 - Pf6N2E2_2278 0.75 -2.5
2,696,306 - Pf6N2E2_2278 0.75 -1.2
2,696,464 + Pf6N2E2_2278 0.79 -2.9
2,696,464 + Pf6N2E2_2278 0.79 -2.6
2,696,464 + Pf6N2E2_2278 0.79 -2.6
2,696,465 - Pf6N2E2_2278 0.79 -2.7
2,696,470 + Pf6N2E2_2278 0.79 -3.3
2,696,470 + Pf6N2E2_2278 0.79 -2.6
2,696,470 + Pf6N2E2_2278 0.79 -2.6
2,696,470 + Pf6N2E2_2278 0.79 -3.9
2,696,470 + Pf6N2E2_2278 0.79 -3.1
2,696,471 - Pf6N2E2_2278 0.80 -2.5
2,696,471 - Pf6N2E2_2278 0.80 -3.3
2,696,471 - Pf6N2E2_2278 0.80 -3.5
2,696,471 - Pf6N2E2_2278 0.80 -1.4
2,696,656 + Pf6N2E2_2278 0.85 -4.3
2,696,657 - Pf6N2E2_2278 0.85 -2.2
2,696,657 - Pf6N2E2_2278 0.85 -3.4
2,696,657 - Pf6N2E2_2278 0.85 -3.1
2,696,779 + Pf6N2E2_2278 0.88 -2.0
2,696,779 + Pf6N2E2_2278 0.88 -1.9
2,697,258 - Pf6N2E2_2279 0.12 -0.4
2,697,419 + Pf6N2E2_2279 0.41 +0.1
2,697,420 - Pf6N2E2_2279 0.41 -1.4
2,697,420 - Pf6N2E2_2279 0.41 -0.2
2,697,427 - Pf6N2E2_2279 0.42 +0.2
2,697,640 + Pf6N2E2_2279 0.80 +0.1
2,697,640 + Pf6N2E2_2279 0.80 +0.7
2,698,152 - Pf6N2E2_2280 0.14 +1.5

Or see this region's nucleotide sequence