Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2181

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2180 and Pf6N2E2_2181 are separated by 61 nucleotidesPf6N2E2_2181 and Pf6N2E2_2182 are separated by 133 nucleotidesPf6N2E2_2182 and Pf6N2E2_2183 overlap by 4 nucleotides Pf6N2E2_2180 - Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109), at 2,585,141 to 2,586,157 _2180 Pf6N2E2_2181 - Arginine N-succinyltransferase (EC 2.3.1.109), at 2,586,219 to 2,587,253 _2181 Pf6N2E2_2182 - hypothetical protein, at 2,587,387 to 2,588,166 _2182 Pf6N2E2_2183 - hypothetical protein, at 2,588,163 to 2,588,825 _2183 Position (kb) 2586 2587 2588Strain fitness (log2 ratio) -2 -1 0 1 2at 2585.388 kb on - strand, within Pf6N2E2_2180at 2585.402 kb on + strand, within Pf6N2E2_2180at 2585.781 kb on - strand, within Pf6N2E2_2180at 2585.781 kb on - strand, within Pf6N2E2_2180at 2585.781 kb on - strand, within Pf6N2E2_2180at 2585.781 kb on - strand, within Pf6N2E2_2180at 2585.888 kb on + strand, within Pf6N2E2_2180at 2585.888 kb on + strandat 2585.889 kb on - strand, within Pf6N2E2_2180at 2585.889 kb on - strand, within Pf6N2E2_2180at 2585.896 kb on + strandat 2586.038 kb on + strand, within Pf6N2E2_2180at 2586.153 kb on + strandat 2586.201 kb on + strandat 2586.201 kb on + strandat 2586.201 kb on + strandat 2586.201 kb on + strandat 2586.202 kb on - strandat 2586.202 kb on - strandat 2586.202 kb on - strandat 2586.202 kb on - strandat 2586.202 kb on - strandat 2586.202 kb on - strandat 2586.472 kb on - strandat 2586.472 kb on - strand, within Pf6N2E2_2181at 2586.477 kb on + strand, within Pf6N2E2_2181at 2586.850 kb on - strand, within Pf6N2E2_2181at 2587.285 kb on - strandat 2587.285 kb on - strandat 2587.289 kb on - strandat 2587.289 kb on - strandat 2587.289 kb on - strandat 2587.329 kb on - strandat 2587.329 kb on - strandat 2587.357 kb on - strandat 2587.434 kb on + strandat 2587.457 kb on + strandat 2587.652 kb on - strand, within Pf6N2E2_2182at 2587.671 kb on + strand, within Pf6N2E2_2182at 2587.712 kb on - strand, within Pf6N2E2_2182at 2587.884 kb on - strand, within Pf6N2E2_2182at 2587.884 kb on - strand, within Pf6N2E2_2182at 2587.884 kb on - strand, within Pf6N2E2_2182at 2588.017 kb on + strand, within Pf6N2E2_2182at 2588.017 kb on + strand, within Pf6N2E2_2182at 2588.018 kb on - strand, within Pf6N2E2_2182at 2588.024 kb on - strand, within Pf6N2E2_2182at 2588.092 kb on + strandat 2588.093 kb on - strandat 2588.093 kb on - strandat 2588.199 kb on + strandat 2588.199 kb on + strandat 2588.200 kb on - strandat 2588.200 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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2,585,388 - Pf6N2E2_2180 0.24 -1.7
2,585,402 + Pf6N2E2_2180 0.26 -0.7
2,585,781 - Pf6N2E2_2180 0.63 -1.9
2,585,781 - Pf6N2E2_2180 0.63 +2.6
2,585,781 - Pf6N2E2_2180 0.63 -2.2
2,585,781 - Pf6N2E2_2180 0.63 -0.4
2,585,888 + Pf6N2E2_2180 0.73 +1.9
2,585,888 + +1.2
2,585,889 - Pf6N2E2_2180 0.74 -0.6
2,585,889 - Pf6N2E2_2180 0.74 +0.5
2,585,896 + +1.6
2,586,038 + Pf6N2E2_2180 0.88 -0.0
2,586,153 + +1.1
2,586,201 + +1.3
2,586,201 + +1.0
2,586,201 + +0.3
2,586,201 + +1.2
2,586,202 - +0.4
2,586,202 - -1.4
2,586,202 - -0.5
2,586,202 - -0.3
2,586,202 - +0.6
2,586,202 - +1.3
2,586,472 - +0.3
2,586,472 - Pf6N2E2_2181 0.24 +1.2
2,586,477 + Pf6N2E2_2181 0.25 -2.5
2,586,850 - Pf6N2E2_2181 0.61 -0.7
2,587,285 - -0.3
2,587,285 - -1.4
2,587,289 - +0.5
2,587,289 - -0.1
2,587,289 - +0.8
2,587,329 - +0.7
2,587,329 - -0.2
2,587,357 - -0.8
2,587,434 + +0.1
2,587,457 + -1.4
2,587,652 - Pf6N2E2_2182 0.34 +1.2
2,587,671 + Pf6N2E2_2182 0.36 -0.0
2,587,712 - Pf6N2E2_2182 0.42 -2.0
2,587,884 - Pf6N2E2_2182 0.64 +0.1
2,587,884 - Pf6N2E2_2182 0.64 +0.6
2,587,884 - Pf6N2E2_2182 0.64 -0.2
2,588,017 + Pf6N2E2_2182 0.81 -0.8
2,588,017 + Pf6N2E2_2182 0.81 +2.4
2,588,018 - Pf6N2E2_2182 0.81 -0.1
2,588,024 - Pf6N2E2_2182 0.82 -1.1
2,588,092 + +0.8
2,588,093 - -0.4
2,588,093 - -0.1
2,588,199 + -0.6
2,588,199 + -0.4
2,588,200 - +0.6
2,588,200 - -0.5

Or see this region's nucleotide sequence