Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2110 and Pf6N2E2_2111 are separated by 168 nucleotides Pf6N2E2_2111 and Pf6N2E2_2112 are separated by 35 nucleotides Pf6N2E2_2112 and Pf6N2E2_2113 are separated by 11 nucleotides
Pf6N2E2_2110 - LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase, at 2,507,040 to 2,507,942
_2110
Pf6N2E2_2111 - Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) , at 2,508,111 to 2,508,809
_2111
Pf6N2E2_2112 - Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) , at 2,508,845 to 2,509,510
_2112
Pf6N2E2_2113 - Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 2,509,522 to 2,510,703
_2113
Position (kb)
2508
2509 Strain fitness (log2 ratio)
-2
-1
0
1 at 2507.461 kb on + strand, within Pf6N2E2_2110 at 2507.461 kb on + strand, within Pf6N2E2_2110 at 2507.462 kb on - strand, within Pf6N2E2_2110 at 2507.462 kb on - strand, within Pf6N2E2_2110 at 2507.462 kb on - strand, within Pf6N2E2_2110 at 2507.792 kb on + strand, within Pf6N2E2_2110 at 2507.792 kb on + strand, within Pf6N2E2_2110 at 2507.793 kb on - strand, within Pf6N2E2_2110 at 2507.972 kb on + strand at 2507.973 kb on - strand at 2508.097 kb on + strand at 2508.097 kb on + strand at 2508.098 kb on - strand at 2508.098 kb on - strand at 2508.142 kb on - strand at 2508.307 kb on + strand, within Pf6N2E2_2111 at 2508.308 kb on - strand, within Pf6N2E2_2111 at 2508.348 kb on + strand, within Pf6N2E2_2111 at 2508.348 kb on + strand at 2508.348 kb on + strand, within Pf6N2E2_2111 at 2508.349 kb on - strand, within Pf6N2E2_2111 at 2508.349 kb on - strand, within Pf6N2E2_2111 at 2508.349 kb on - strand, within Pf6N2E2_2111 at 2508.744 kb on + strand at 2508.745 kb on - strand at 2508.839 kb on - strand at 2508.839 kb on - strand at 2508.902 kb on + strand at 2508.903 kb on - strand at 2508.903 kb on - strand at 2508.905 kb on + strand at 2508.947 kb on + strand, within Pf6N2E2_2112 at 2508.947 kb on + strand, within Pf6N2E2_2112 at 2508.948 kb on - strand, within Pf6N2E2_2112 at 2509.177 kb on + strand, within Pf6N2E2_2112 at 2509.177 kb on + strand, within Pf6N2E2_2112 at 2509.178 kb on - strand, within Pf6N2E2_2112 at 2509.178 kb on - strand, within Pf6N2E2_2112 at 2509.178 kb on - strand, within Pf6N2E2_2112
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 2,507,461 + Pf6N2E2_2110 0.47 +0.1 2,507,461 + Pf6N2E2_2110 0.47 -0.0 2,507,462 - Pf6N2E2_2110 0.47 +1.1 2,507,462 - Pf6N2E2_2110 0.47 +0.5 2,507,462 - Pf6N2E2_2110 0.47 +0.8 2,507,792 + Pf6N2E2_2110 0.83 +0.4 2,507,792 + Pf6N2E2_2110 0.83 +0.2 2,507,793 - Pf6N2E2_2110 0.83 +0.5 2,507,972 + +1.1 2,507,973 - -0.7 2,508,097 + +0.5 2,508,097 + +0.6 2,508,098 - -0.1 2,508,098 - +0.4 2,508,142 - -1.8 2,508,307 + Pf6N2E2_2111 0.28 -0.0 2,508,308 - Pf6N2E2_2111 0.28 -0.8 2,508,348 + Pf6N2E2_2111 0.34 +0.5 2,508,348 + +1.0 2,508,348 + Pf6N2E2_2111 0.34 -1.3 2,508,349 - Pf6N2E2_2111 0.34 -0.7 2,508,349 - Pf6N2E2_2111 0.34 +0.4 2,508,349 - Pf6N2E2_2111 0.34 -1.4 2,508,744 + -2.2 2,508,745 - +0.6 2,508,839 - -0.6 2,508,839 - +1.3 2,508,902 + -1.7 2,508,903 - +0.5 2,508,903 - +0.3 2,508,905 + -0.1 2,508,947 + Pf6N2E2_2112 0.15 -1.2 2,508,947 + Pf6N2E2_2112 0.15 +0.1 2,508,948 - Pf6N2E2_2112 0.15 +0.1 2,509,177 + Pf6N2E2_2112 0.50 +0.0 2,509,177 + Pf6N2E2_2112 0.50 +0.0 2,509,178 - Pf6N2E2_2112 0.50 +0.1 2,509,178 - Pf6N2E2_2112 0.50 -1.0 2,509,178 - Pf6N2E2_2112 0.50 +0.8
Or see this region's nucleotide sequence