Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2080

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2079 and Pf6N2E2_2080 are separated by 185 nucleotidesPf6N2E2_2080 and Pf6N2E2_2081 are separated by 217 nucleotidesPf6N2E2_2081 and Pf6N2E2_2082 are separated by 217 nucleotides Pf6N2E2_2079 - HTH-type transcriptional regulator hdfR, at 2,472,946 to 2,473,809 _2079 Pf6N2E2_2080 - hypothetical protein, at 2,473,995 to 2,474,228 _2080 Pf6N2E2_2081 - putative exported protein, at 2,474,446 to 2,474,967 _2081 Pf6N2E2_2082 - Integral membrane protein, at 2,475,185 to 2,475,838 _2082 Position (kb) 2473 2474 2475Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2473.091 kb on + strand, within Pf6N2E2_2079at 2473.381 kb on + strand, within Pf6N2E2_2079at 2473.381 kb on + strand, within Pf6N2E2_2079at 2473.382 kb on - strand, within Pf6N2E2_2079at 2473.382 kb on - strandat 2473.382 kb on - strand, within Pf6N2E2_2079at 2473.412 kb on + strand, within Pf6N2E2_2079at 2473.413 kb on - strand, within Pf6N2E2_2079at 2473.413 kb on - strand, within Pf6N2E2_2079at 2473.413 kb on - strand, within Pf6N2E2_2079at 2473.471 kb on + strand, within Pf6N2E2_2079at 2473.472 kb on - strand, within Pf6N2E2_2079at 2473.472 kb on - strand, within Pf6N2E2_2079at 2473.477 kb on + strand, within Pf6N2E2_2079at 2473.477 kb on + strand, within Pf6N2E2_2079at 2473.478 kb on - strand, within Pf6N2E2_2079at 2473.478 kb on - strand, within Pf6N2E2_2079at 2473.478 kb on - strand, within Pf6N2E2_2079at 2473.579 kb on + strand, within Pf6N2E2_2079at 2473.579 kb on + strand, within Pf6N2E2_2079at 2473.579 kb on + strand, within Pf6N2E2_2079at 2473.579 kb on + strand, within Pf6N2E2_2079at 2473.579 kb on + strand, within Pf6N2E2_2079at 2473.580 kb on - strand, within Pf6N2E2_2079at 2473.580 kb on - strand, within Pf6N2E2_2079at 2473.580 kb on - strand, within Pf6N2E2_2079at 2473.580 kb on - strand, within Pf6N2E2_2079at 2473.607 kb on - strand, within Pf6N2E2_2079at 2473.633 kb on + strand, within Pf6N2E2_2079at 2473.633 kb on + strand, within Pf6N2E2_2079at 2473.633 kb on + strand, within Pf6N2E2_2079at 2473.634 kb on - strand, within Pf6N2E2_2079at 2473.693 kb on + strand, within Pf6N2E2_2079at 2473.693 kb on + strand, within Pf6N2E2_2079at 2473.810 kb on + strandat 2473.810 kb on + strandat 2473.833 kb on + strandat 2473.834 kb on - strandat 2473.943 kb on + strandat 2473.943 kb on + strandat 2473.943 kb on + strandat 2473.943 kb on + strandat 2473.943 kb on + strandat 2474.126 kb on - strand, within Pf6N2E2_2080at 2474.267 kb on - strandat 2474.267 kb on - strandat 2474.267 kb on - strandat 2474.267 kb on - strandat 2474.267 kb on - strandat 2474.349 kb on - strandat 2474.441 kb on + strandat 2474.441 kb on + strandat 2474.441 kb on + strandat 2474.441 kb on + strandat 2474.441 kb on + strandat 2474.441 kb on + strandat 2474.441 kb on + strandat 2474.441 kb on + strandat 2474.442 kb on - strandat 2474.442 kb on - strandat 2474.442 kb on - strandat 2474.442 kb on - strandat 2474.442 kb on - strandat 2474.442 kb on - strandat 2474.442 kb on - strandat 2474.445 kb on + strandat 2474.445 kb on + strandat 2474.445 kb on + strandat 2474.445 kb on + strandat 2474.445 kb on + strandat 2474.446 kb on - strandat 2474.446 kb on - strandat 2474.446 kb on - strandat 2474.446 kb on - strandat 2474.493 kb on + strandat 2474.494 kb on - strandat 2474.494 kb on - strandat 2474.494 kb on - strandat 2474.779 kb on + strand, within Pf6N2E2_2081at 2474.780 kb on - strand, within Pf6N2E2_2081at 2474.780 kb on - strand, within Pf6N2E2_2081at 2474.965 kb on + strandat 2475.072 kb on - strandat 2475.077 kb on - strandat 2475.094 kb on + strandat 2475.095 kb on - strandat 2475.095 kb on - strandat 2475.124 kb on - strandat 2475.124 kb on - strandat 2475.124 kb on - strandat 2475.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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2,473,091 + Pf6N2E2_2079 0.17 -0.0
2,473,381 + Pf6N2E2_2079 0.50 +0.6
2,473,381 + Pf6N2E2_2079 0.50 -0.0
2,473,382 - Pf6N2E2_2079 0.50 +0.9
2,473,382 - +0.5
2,473,382 - Pf6N2E2_2079 0.50 +1.1
2,473,412 + Pf6N2E2_2079 0.54 +0.2
2,473,413 - Pf6N2E2_2079 0.54 -0.6
2,473,413 - Pf6N2E2_2079 0.54 -0.2
2,473,413 - Pf6N2E2_2079 0.54 -0.1
2,473,471 + Pf6N2E2_2079 0.61 +0.0
2,473,472 - Pf6N2E2_2079 0.61 -1.5
2,473,472 - Pf6N2E2_2079 0.61 -0.5
2,473,477 + Pf6N2E2_2079 0.61 -0.6
2,473,477 + Pf6N2E2_2079 0.61 -0.4
2,473,478 - Pf6N2E2_2079 0.62 +0.5
2,473,478 - Pf6N2E2_2079 0.62 -0.1
2,473,478 - Pf6N2E2_2079 0.62 +0.3
2,473,579 + Pf6N2E2_2079 0.73 -0.1
2,473,579 + Pf6N2E2_2079 0.73 -0.1
2,473,579 + Pf6N2E2_2079 0.73 -1.2
2,473,579 + Pf6N2E2_2079 0.73 -0.1
2,473,579 + Pf6N2E2_2079 0.73 +0.5
2,473,580 - Pf6N2E2_2079 0.73 +0.7
2,473,580 - Pf6N2E2_2079 0.73 -0.0
2,473,580 - Pf6N2E2_2079 0.73 +0.7
2,473,580 - Pf6N2E2_2079 0.73 -1.1
2,473,607 - Pf6N2E2_2079 0.77 +0.2
2,473,633 + Pf6N2E2_2079 0.80 -0.8
2,473,633 + Pf6N2E2_2079 0.80 -0.1
2,473,633 + Pf6N2E2_2079 0.80 +0.1
2,473,634 - Pf6N2E2_2079 0.80 -0.8
2,473,693 + Pf6N2E2_2079 0.86 -0.7
2,473,693 + Pf6N2E2_2079 0.86 +1.5
2,473,810 + -1.8
2,473,810 + -1.1
2,473,833 + +0.0
2,473,834 - +0.8
2,473,943 + -0.1
2,473,943 + +0.0
2,473,943 + +0.7
2,473,943 + -2.1
2,473,943 + -0.1
2,474,126 - Pf6N2E2_2080 0.56 -1.6
2,474,267 - -0.8
2,474,267 - -0.1
2,474,267 - -0.6
2,474,267 - +0.0
2,474,267 - -0.7
2,474,349 - +0.9
2,474,441 + -0.3
2,474,441 + -0.2
2,474,441 + +0.2
2,474,441 + +0.3
2,474,441 + -2.2
2,474,441 + +0.5
2,474,441 + +1.1
2,474,441 + +0.1
2,474,442 - +1.9
2,474,442 - -1.2
2,474,442 - +0.8
2,474,442 - +1.0
2,474,442 - -1.0
2,474,442 - +0.6
2,474,442 - -1.5
2,474,445 + -0.8
2,474,445 + +0.6
2,474,445 + +0.3
2,474,445 + -1.3
2,474,445 + +1.0
2,474,446 - +0.4
2,474,446 - -0.5
2,474,446 - -0.2
2,474,446 - -1.1
2,474,493 + -0.3
2,474,494 - -1.1
2,474,494 - -0.3
2,474,494 - +0.8
2,474,779 + Pf6N2E2_2081 0.64 -0.4
2,474,780 - Pf6N2E2_2081 0.64 +3.0
2,474,780 - Pf6N2E2_2081 0.64 +0.3
2,474,965 + +0.3
2,475,072 - +1.0
2,475,077 - -0.8
2,475,094 + +1.7
2,475,095 - +0.5
2,475,095 - +0.5
2,475,124 - +1.8
2,475,124 - +0.3
2,475,124 - +0.1
2,475,124 - -0.6

Or see this region's nucleotide sequence