Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2028

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2026 and Pf6N2E2_2027 are separated by 45 nucleotidesPf6N2E2_2027 and Pf6N2E2_2028 are separated by 362 nucleotidesPf6N2E2_2028 and Pf6N2E2_2029 are separated by 95 nucleotidesPf6N2E2_2029 and Pf6N2E2_2030 are separated by 126 nucleotides Pf6N2E2_2026 - hypothetical protein, at 2,415,118 to 2,415,924 _2026 Pf6N2E2_2027 - hypothetical protein, at 2,415,970 to 2,416,140 _2027 Pf6N2E2_2028 - Lipase precursor (EC 3.1.1.3), at 2,416,503 to 2,417,372 _2028 Pf6N2E2_2029 - Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8), at 2,417,468 to 2,417,749 _2029 Pf6N2E2_2030 - ABC transporter, periplasmic substrate-binding protein, at 2,417,876 to 2,419,744 _2030 Position (kb) 2416 2417 2418Strain fitness (log2 ratio) -2 -1 0 1 2at 2415.524 kb on + strand, within Pf6N2E2_2026at 2415.524 kb on + strand, within Pf6N2E2_2026at 2415.524 kb on + strand, within Pf6N2E2_2026at 2415.524 kb on + strand, within Pf6N2E2_2026at 2415.525 kb on - strand, within Pf6N2E2_2026at 2415.525 kb on - strand, within Pf6N2E2_2026at 2415.525 kb on - strand, within Pf6N2E2_2026at 2415.525 kb on - strand, within Pf6N2E2_2026at 2415.547 kb on + strand, within Pf6N2E2_2026at 2415.547 kb on + strand, within Pf6N2E2_2026at 2415.547 kb on + strand, within Pf6N2E2_2026at 2415.547 kb on + strand, within Pf6N2E2_2026at 2415.547 kb on + strand, within Pf6N2E2_2026at 2415.547 kb on + strand, within Pf6N2E2_2026at 2415.548 kb on - strand, within Pf6N2E2_2026at 2415.548 kb on - strand, within Pf6N2E2_2026at 2415.548 kb on - strand, within Pf6N2E2_2026at 2415.613 kb on + strand, within Pf6N2E2_2026at 2415.613 kb on + strand, within Pf6N2E2_2026at 2415.613 kb on + strand, within Pf6N2E2_2026at 2415.614 kb on - strand, within Pf6N2E2_2026at 2415.793 kb on + strand, within Pf6N2E2_2026at 2415.794 kb on - strand, within Pf6N2E2_2026at 2415.850 kb on - strandat 2415.938 kb on - strandat 2415.977 kb on + strandat 2416.169 kb on + strandat 2416.169 kb on + strandat 2416.169 kb on + strandat 2416.170 kb on - strandat 2416.241 kb on - strandat 2416.241 kb on - strandat 2416.241 kb on - strandat 2416.311 kb on + strandat 2416.311 kb on + strandat 2416.312 kb on - strandat 2416.334 kb on - strandat 2416.334 kb on - strandat 2416.334 kb on - strandat 2416.334 kb on - strandat 2416.334 kb on - strandat 2416.345 kb on + strandat 2416.345 kb on + strandat 2416.346 kb on - strandat 2416.369 kb on - strandat 2416.428 kb on + strandat 2416.428 kb on + strandat 2416.441 kb on - strandat 2416.684 kb on + strand, within Pf6N2E2_2028at 2416.684 kb on + strand, within Pf6N2E2_2028at 2416.684 kb on + strand, within Pf6N2E2_2028at 2416.684 kb on + strand, within Pf6N2E2_2028at 2416.684 kb on + strand, within Pf6N2E2_2028at 2416.685 kb on - strand, within Pf6N2E2_2028at 2416.685 kb on - strand, within Pf6N2E2_2028at 2417.091 kb on + strand, within Pf6N2E2_2028at 2417.092 kb on - strand, within Pf6N2E2_2028at 2417.092 kb on - strand, within Pf6N2E2_2028at 2417.094 kb on + strand, within Pf6N2E2_2028at 2417.094 kb on + strand, within Pf6N2E2_2028at 2417.094 kb on + strand, within Pf6N2E2_2028at 2417.095 kb on - strand, within Pf6N2E2_2028at 2417.108 kb on + strand, within Pf6N2E2_2028at 2417.109 kb on - strand, within Pf6N2E2_2028at 2417.175 kb on + strand, within Pf6N2E2_2028at 2417.176 kb on - strand, within Pf6N2E2_2028at 2417.176 kb on - strand, within Pf6N2E2_2028at 2417.176 kb on - strand, within Pf6N2E2_2028at 2417.257 kb on - strand, within Pf6N2E2_2028at 2417.270 kb on + strand, within Pf6N2E2_2028at 2417.444 kb on - strandat 2417.675 kb on - strand, within Pf6N2E2_2029at 2417.837 kb on - strandat 2417.902 kb on - strandat 2417.902 kb on - strandat 2417.972 kb on + strandat 2417.973 kb on - strandat 2417.991 kb on - strandat 2418.017 kb on + strandat 2418.017 kb on + strandat 2418.098 kb on + strand, within Pf6N2E2_2030at 2418.098 kb on + strand, within Pf6N2E2_2030at 2418.099 kb on - strand, within Pf6N2E2_2030at 2418.143 kb on + strand, within Pf6N2E2_2030at 2418.179 kb on + strand, within Pf6N2E2_2030at 2418.180 kb on - strand, within Pf6N2E2_2030at 2418.180 kb on - strand, within Pf6N2E2_2030at 2418.180 kb on - strand, within Pf6N2E2_2030at 2418.188 kb on + strand, within Pf6N2E2_2030at 2418.189 kb on - strand, within Pf6N2E2_2030at 2418.245 kb on + strand, within Pf6N2E2_2030at 2418.245 kb on + strand, within Pf6N2E2_2030at 2418.245 kb on + strand, within Pf6N2E2_2030at 2418.246 kb on - strand, within Pf6N2E2_2030

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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2,415,524 + Pf6N2E2_2026 0.50 +0.4
2,415,524 + Pf6N2E2_2026 0.50 -0.7
2,415,524 + Pf6N2E2_2026 0.50 +0.3
2,415,524 + Pf6N2E2_2026 0.50 -0.3
2,415,525 - Pf6N2E2_2026 0.50 -1.3
2,415,525 - Pf6N2E2_2026 0.50 +0.2
2,415,525 - Pf6N2E2_2026 0.50 -0.6
2,415,525 - Pf6N2E2_2026 0.50 -2.0
2,415,547 + Pf6N2E2_2026 0.53 -0.0
2,415,547 + Pf6N2E2_2026 0.53 +0.7
2,415,547 + Pf6N2E2_2026 0.53 -0.5
2,415,547 + Pf6N2E2_2026 0.53 +0.7
2,415,547 + Pf6N2E2_2026 0.53 +0.3
2,415,547 + Pf6N2E2_2026 0.53 -0.1
2,415,548 - Pf6N2E2_2026 0.53 -0.8
2,415,548 - Pf6N2E2_2026 0.53 +0.4
2,415,548 - Pf6N2E2_2026 0.53 -1.0
2,415,613 + Pf6N2E2_2026 0.61 -1.2
2,415,613 + Pf6N2E2_2026 0.61 -1.4
2,415,613 + Pf6N2E2_2026 0.61 -0.1
2,415,614 - Pf6N2E2_2026 0.61 +0.9
2,415,793 + Pf6N2E2_2026 0.84 -0.8
2,415,794 - Pf6N2E2_2026 0.84 -0.1
2,415,850 - -0.3
2,415,938 - -0.4
2,415,977 + +0.1
2,416,169 + +2.2
2,416,169 + -0.3
2,416,169 + +1.5
2,416,170 - +1.2
2,416,241 - -0.8
2,416,241 - -1.3
2,416,241 - -0.3
2,416,311 + -0.6
2,416,311 + +1.2
2,416,312 - -0.1
2,416,334 - +0.2
2,416,334 - -1.7
2,416,334 - +0.2
2,416,334 - +0.8
2,416,334 - -0.0
2,416,345 + -1.1
2,416,345 + +2.2
2,416,346 - +0.4
2,416,369 - -1.3
2,416,428 + -0.4
2,416,428 + +0.2
2,416,441 - +0.3
2,416,684 + Pf6N2E2_2028 0.21 +0.0
2,416,684 + Pf6N2E2_2028 0.21 -1.7
2,416,684 + Pf6N2E2_2028 0.21 -0.8
2,416,684 + Pf6N2E2_2028 0.21 -1.7
2,416,684 + Pf6N2E2_2028 0.21 -0.8
2,416,685 - Pf6N2E2_2028 0.21 -0.8
2,416,685 - Pf6N2E2_2028 0.21 -0.7
2,417,091 + Pf6N2E2_2028 0.68 +0.5
2,417,092 - Pf6N2E2_2028 0.68 -0.6
2,417,092 - Pf6N2E2_2028 0.68 +0.5
2,417,094 + Pf6N2E2_2028 0.68 -1.8
2,417,094 + Pf6N2E2_2028 0.68 +0.6
2,417,094 + Pf6N2E2_2028 0.68 -0.3
2,417,095 - Pf6N2E2_2028 0.68 +0.7
2,417,108 + Pf6N2E2_2028 0.70 +0.5
2,417,109 - Pf6N2E2_2028 0.70 -1.5
2,417,175 + Pf6N2E2_2028 0.77 +0.4
2,417,176 - Pf6N2E2_2028 0.77 -1.8
2,417,176 - Pf6N2E2_2028 0.77 -0.9
2,417,176 - Pf6N2E2_2028 0.77 -0.3
2,417,257 - Pf6N2E2_2028 0.87 -0.1
2,417,270 + Pf6N2E2_2028 0.88 -0.1
2,417,444 - +0.8
2,417,675 - Pf6N2E2_2029 0.73 +0.8
2,417,837 - +0.3
2,417,902 - -1.3
2,417,902 - -0.4
2,417,972 + -0.3
2,417,973 - +0.4
2,417,991 - +0.5
2,418,017 + -0.5
2,418,017 + -2.2
2,418,098 + Pf6N2E2_2030 0.12 -1.2
2,418,098 + Pf6N2E2_2030 0.12 +0.7
2,418,099 - Pf6N2E2_2030 0.12 -0.3
2,418,143 + Pf6N2E2_2030 0.14 +1.5
2,418,179 + Pf6N2E2_2030 0.16 +1.0
2,418,180 - Pf6N2E2_2030 0.16 -0.1
2,418,180 - Pf6N2E2_2030 0.16 -0.0
2,418,180 - Pf6N2E2_2030 0.16 -0.8
2,418,188 + Pf6N2E2_2030 0.17 +0.4
2,418,189 - Pf6N2E2_2030 0.17 -1.1
2,418,245 + Pf6N2E2_2030 0.20 -1.0
2,418,245 + Pf6N2E2_2030 0.20 +0.1
2,418,245 + Pf6N2E2_2030 0.20 -1.0
2,418,246 - Pf6N2E2_2030 0.20 +0.6

Or see this region's nucleotide sequence