Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1805

Experiment: molybdate 0.25 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1804 and Pf6N2E2_1805 are separated by 49 nucleotidesPf6N2E2_1805 and Pf6N2E2_1806 are separated by 701 nucleotides Pf6N2E2_1804 - Immune-responsive protein 1, at 2,133,440 to 2,134,834 _1804 Pf6N2E2_1805 - Multidrug resistance protein B, at 2,134,884 to 2,136,029 _1805 Pf6N2E2_1806 - hypothetical protein, at 2,136,731 to 2,137,237 _1806 Position (kb) 2134 2135 2136 2137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2134.345 kb on - strand, within Pf6N2E2_1804at 2134.424 kb on + strand, within Pf6N2E2_1804at 2134.425 kb on - strand, within Pf6N2E2_1804at 2134.620 kb on + strand, within Pf6N2E2_1804at 2134.620 kb on + strand, within Pf6N2E2_1804at 2134.620 kb on + strand, within Pf6N2E2_1804at 2134.620 kb on + strand, within Pf6N2E2_1804at 2134.621 kb on - strand, within Pf6N2E2_1804at 2134.621 kb on - strand, within Pf6N2E2_1804at 2134.723 kb on - strandat 2134.742 kb on - strandat 2134.742 kb on - strandat 2134.742 kb on - strandat 2134.842 kb on + strandat 2134.842 kb on + strandat 2134.843 kb on - strandat 2134.845 kb on - strandat 2134.956 kb on - strandat 2135.032 kb on - strand, within Pf6N2E2_1805at 2135.032 kb on - strand, within Pf6N2E2_1805at 2135.040 kb on + strand, within Pf6N2E2_1805at 2135.535 kb on + strand, within Pf6N2E2_1805at 2135.856 kb on + strand, within Pf6N2E2_1805at 2135.856 kb on + strand, within Pf6N2E2_1805at 2135.856 kb on + strand, within Pf6N2E2_1805at 2135.928 kb on - strandat 2135.949 kb on + strandat 2135.950 kb on - strandat 2136.086 kb on + strandat 2136.087 kb on - strandat 2136.087 kb on - strandat 2136.122 kb on - strandat 2136.141 kb on + strandat 2136.141 kb on + strandat 2136.204 kb on - strandat 2136.204 kb on - strandat 2136.207 kb on + strandat 2136.207 kb on + strandat 2136.208 kb on - strandat 2136.208 kb on - strandat 2136.384 kb on + strandat 2136.385 kb on - strandat 2136.758 kb on + strandat 2136.921 kb on - strand, within Pf6N2E2_1806

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
remove
2,134,345 - Pf6N2E2_1804 0.65 +0.2
2,134,424 + Pf6N2E2_1804 0.71 +0.5
2,134,425 - Pf6N2E2_1804 0.71 -0.4
2,134,620 + Pf6N2E2_1804 0.85 +0.4
2,134,620 + Pf6N2E2_1804 0.85 +1.9
2,134,620 + Pf6N2E2_1804 0.85 +1.5
2,134,620 + Pf6N2E2_1804 0.85 -0.3
2,134,621 - Pf6N2E2_1804 0.85 -0.5
2,134,621 - Pf6N2E2_1804 0.85 +0.8
2,134,723 - -0.3
2,134,742 - -0.0
2,134,742 - -1.8
2,134,742 - -1.0
2,134,842 + +1.4
2,134,842 + -0.8
2,134,843 - -0.0
2,134,845 - +0.5
2,134,956 - +1.7
2,135,032 - Pf6N2E2_1805 0.13 -2.7
2,135,032 - Pf6N2E2_1805 0.13 -1.8
2,135,040 + Pf6N2E2_1805 0.14 -2.8
2,135,535 + Pf6N2E2_1805 0.57 -0.8
2,135,856 + Pf6N2E2_1805 0.85 -1.6
2,135,856 + Pf6N2E2_1805 0.85 -0.5
2,135,856 + Pf6N2E2_1805 0.85 -1.2
2,135,928 - -0.4
2,135,949 + -0.4
2,135,950 - -1.0
2,136,086 + +1.7
2,136,087 - +0.5
2,136,087 - +0.9
2,136,122 - -0.1
2,136,141 + -0.1
2,136,141 + +0.2
2,136,204 - +0.9
2,136,204 - -0.8
2,136,207 + +1.4
2,136,207 + -1.0
2,136,208 - +1.2
2,136,208 - +0.6
2,136,384 + +0.7
2,136,385 - +0.0
2,136,758 + -0.6
2,136,921 - Pf6N2E2_1806 0.37 -0.9

Or see this region's nucleotide sequence