Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1635

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1633 and Pf6N2E2_1634 overlap by 4 nucleotidesPf6N2E2_1634 and Pf6N2E2_1635 are separated by 14 nucleotidesPf6N2E2_1635 and Pf6N2E2_1636 are separated by 290 nucleotides Pf6N2E2_1633 - Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1), at 1,932,613 to 1,933,662 _1633 Pf6N2E2_1634 - ABC-type Fe3+-siderophore transport system, permease component, at 1,933,659 to 1,934,624 _1634 Pf6N2E2_1635 - ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components, at 1,934,639 to 1,935,442 _1635 Pf6N2E2_1636 - Ferrichrome-iron receptor, at 1,935,733 to 1,937,946 _1636 Position (kb) 1934 1935 1936Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1934.053 kb on + strand, within Pf6N2E2_1634at 1934.053 kb on + strand, within Pf6N2E2_1634at 1934.053 kb on + strand, within Pf6N2E2_1634at 1934.054 kb on - strand, within Pf6N2E2_1634at 1934.163 kb on - strand, within Pf6N2E2_1634at 1934.163 kb on - strand, within Pf6N2E2_1634at 1934.163 kb on - strand, within Pf6N2E2_1634at 1934.300 kb on + strand, within Pf6N2E2_1634at 1934.301 kb on - strand, within Pf6N2E2_1634at 1934.301 kb on - strand, within Pf6N2E2_1634at 1934.513 kb on - strand, within Pf6N2E2_1634at 1934.513 kb on - strand, within Pf6N2E2_1634at 1934.547 kb on + strandat 1934.547 kb on + strandat 1934.547 kb on + strandat 1934.547 kb on + strandat 1934.548 kb on - strandat 1934.548 kb on - strandat 1934.548 kb on - strandat 1934.709 kb on + strandat 1934.935 kb on + strandat 1934.936 kb on - strand, within Pf6N2E2_1635at 1935.176 kb on - strand, within Pf6N2E2_1635at 1935.295 kb on + strand, within Pf6N2E2_1635at 1935.296 kb on - strand, within Pf6N2E2_1635at 1935.311 kb on + strand, within Pf6N2E2_1635at 1935.311 kb on + strand, within Pf6N2E2_1635at 1935.312 kb on - strand, within Pf6N2E2_1635at 1935.312 kb on - strand, within Pf6N2E2_1635at 1935.312 kb on - strand, within Pf6N2E2_1635at 1935.312 kb on - strand, within Pf6N2E2_1635at 1935.411 kb on + strandat 1935.411 kb on + strandat 1935.411 kb on + strandat 1935.527 kb on + strandat 1935.549 kb on + strandat 1935.549 kb on + strandat 1935.549 kb on + strandat 1935.549 kb on + strandat 1935.550 kb on - strandat 1935.550 kb on - strandat 1935.550 kb on - strandat 1935.550 kb on - strandat 1935.550 kb on - strandat 1935.550 kb on - strandat 1935.550 kb on - strandat 1935.566 kb on - strandat 1935.566 kb on - strandat 1935.566 kb on - strandat 1935.582 kb on - strandat 1935.637 kb on + strandat 1935.646 kb on + strandat 1935.667 kb on + strandat 1935.667 kb on + strandat 1935.667 kb on + strandat 1935.668 kb on - strandat 1935.668 kb on - strandat 1935.879 kb on + strandat 1936.085 kb on - strand, within Pf6N2E2_1636at 1936.161 kb on - strand, within Pf6N2E2_1636at 1936.216 kb on + strand, within Pf6N2E2_1636

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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1,934,053 + Pf6N2E2_1634 0.41 -0.8
1,934,053 + Pf6N2E2_1634 0.41 -1.0
1,934,053 + Pf6N2E2_1634 0.41 -0.5
1,934,054 - Pf6N2E2_1634 0.41 -4.1
1,934,163 - Pf6N2E2_1634 0.52 +1.0
1,934,163 - Pf6N2E2_1634 0.52 -0.4
1,934,163 - Pf6N2E2_1634 0.52 -1.2
1,934,300 + Pf6N2E2_1634 0.66 -0.5
1,934,301 - Pf6N2E2_1634 0.66 -2.7
1,934,301 - Pf6N2E2_1634 0.66 -1.1
1,934,513 - Pf6N2E2_1634 0.88 -2.6
1,934,513 - Pf6N2E2_1634 0.88 -1.2
1,934,547 + -0.5
1,934,547 + -2.2
1,934,547 + -1.8
1,934,547 + -1.7
1,934,548 - -2.1
1,934,548 - -2.9
1,934,548 - -2.0
1,934,709 + +0.0
1,934,935 + -0.7
1,934,936 - Pf6N2E2_1635 0.37 -0.1
1,935,176 - Pf6N2E2_1635 0.67 -1.7
1,935,295 + Pf6N2E2_1635 0.82 -2.0
1,935,296 - Pf6N2E2_1635 0.82 -2.1
1,935,311 + Pf6N2E2_1635 0.84 -0.8
1,935,311 + Pf6N2E2_1635 0.84 -0.2
1,935,312 - Pf6N2E2_1635 0.84 -2.4
1,935,312 - Pf6N2E2_1635 0.84 -2.3
1,935,312 - Pf6N2E2_1635 0.84 -3.3
1,935,312 - Pf6N2E2_1635 0.84 -1.6
1,935,411 + -0.5
1,935,411 + -2.1
1,935,411 + -0.3
1,935,527 + +0.3
1,935,549 + +0.3
1,935,549 + -1.4
1,935,549 + -1.2
1,935,549 + -1.2
1,935,550 - -0.7
1,935,550 - -1.2
1,935,550 - -0.7
1,935,550 - -1.2
1,935,550 - -3.2
1,935,550 - -1.1
1,935,550 - -3.2
1,935,566 - +0.9
1,935,566 - -2.2
1,935,566 - -0.1
1,935,582 - -2.7
1,935,637 + -1.8
1,935,646 + -0.2
1,935,667 + -1.0
1,935,667 + -0.4
1,935,667 + +0.3
1,935,668 - -2.8
1,935,668 - -0.9
1,935,879 + -1.0
1,936,085 - Pf6N2E2_1636 0.16 -1.5
1,936,161 - Pf6N2E2_1636 0.19 -3.9
1,936,216 + Pf6N2E2_1636 0.22 -2.0

Or see this region's nucleotide sequence