Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1633

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1632 and Pf6N2E2_1633 are separated by 83 nucleotidesPf6N2E2_1633 and Pf6N2E2_1634 overlap by 4 nucleotidesPf6N2E2_1634 and Pf6N2E2_1635 are separated by 14 nucleotides Pf6N2E2_1632 - Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1), at 1,931,621 to 1,932,529 _1632 Pf6N2E2_1633 - Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1), at 1,932,613 to 1,933,662 _1633 Pf6N2E2_1634 - ABC-type Fe3+-siderophore transport system, permease component, at 1,933,659 to 1,934,624 _1634 Pf6N2E2_1635 - ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components, at 1,934,639 to 1,935,442 _1635 Position (kb) 1932 1933 1934Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1931.623 kb on - strandat 1931.623 kb on - strandat 1931.701 kb on + strandat 1931.823 kb on + strand, within Pf6N2E2_1632at 1931.823 kb on + strand, within Pf6N2E2_1632at 1931.824 kb on - strand, within Pf6N2E2_1632at 1931.824 kb on - strand, within Pf6N2E2_1632at 1931.824 kb on - strand, within Pf6N2E2_1632at 1931.824 kb on - strand, within Pf6N2E2_1632at 1931.824 kb on - strand, within Pf6N2E2_1632at 1931.875 kb on - strand, within Pf6N2E2_1632at 1932.078 kb on + strand, within Pf6N2E2_1632at 1932.120 kb on + strand, within Pf6N2E2_1632at 1932.121 kb on - strand, within Pf6N2E2_1632at 1932.121 kb on - strand, within Pf6N2E2_1632at 1932.202 kb on - strand, within Pf6N2E2_1632at 1932.498 kb on - strandat 1932.503 kb on + strandat 1932.503 kb on + strandat 1932.524 kb on + strandat 1932.524 kb on + strandat 1932.524 kb on + strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1932.525 kb on - strandat 1933.007 kb on - strand, within Pf6N2E2_1633at 1933.023 kb on + strand, within Pf6N2E2_1633at 1933.104 kb on - strand, within Pf6N2E2_1633at 1933.254 kb on - strand, within Pf6N2E2_1633at 1933.290 kb on + strand, within Pf6N2E2_1633at 1933.524 kb on - strand, within Pf6N2E2_1633at 1934.053 kb on + strand, within Pf6N2E2_1634at 1934.053 kb on + strand, within Pf6N2E2_1634at 1934.053 kb on + strand, within Pf6N2E2_1634at 1934.054 kb on - strand, within Pf6N2E2_1634at 1934.163 kb on - strand, within Pf6N2E2_1634at 1934.163 kb on - strand, within Pf6N2E2_1634at 1934.163 kb on - strand, within Pf6N2E2_1634at 1934.300 kb on + strand, within Pf6N2E2_1634at 1934.301 kb on - strand, within Pf6N2E2_1634at 1934.301 kb on - strand, within Pf6N2E2_1634at 1934.513 kb on - strand, within Pf6N2E2_1634at 1934.513 kb on - strand, within Pf6N2E2_1634at 1934.547 kb on + strandat 1934.547 kb on + strandat 1934.547 kb on + strandat 1934.547 kb on + strandat 1934.548 kb on - strandat 1934.548 kb on - strandat 1934.548 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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1,931,623 - +2.3
1,931,623 - -0.4
1,931,701 + -3.2
1,931,823 + Pf6N2E2_1632 0.22 -2.4
1,931,823 + Pf6N2E2_1632 0.22 -1.2
1,931,824 - Pf6N2E2_1632 0.22 -2.2
1,931,824 - Pf6N2E2_1632 0.22 +0.8
1,931,824 - Pf6N2E2_1632 0.22 -1.7
1,931,824 - Pf6N2E2_1632 0.22 -0.7
1,931,824 - Pf6N2E2_1632 0.22 -1.8
1,931,875 - Pf6N2E2_1632 0.28 -1.7
1,932,078 + Pf6N2E2_1632 0.50 -2.0
1,932,120 + Pf6N2E2_1632 0.55 -1.7
1,932,121 - Pf6N2E2_1632 0.55 -2.7
1,932,121 - Pf6N2E2_1632 0.55 -0.8
1,932,202 - Pf6N2E2_1632 0.64 -1.2
1,932,498 - -1.7
1,932,503 + -0.5
1,932,503 + +0.3
1,932,524 + -2.6
1,932,524 + -3.4
1,932,524 + -1.5
1,932,525 - -1.7
1,932,525 - -0.5
1,932,525 - -1.6
1,932,525 - -1.0
1,932,525 - -1.8
1,932,525 - -4.1
1,932,525 - -2.1
1,932,525 - -2.5
1,932,525 - -0.7
1,932,525 - +0.3
1,932,525 - -1.8
1,932,525 - -1.3
1,932,525 - -2.3
1,932,525 - -1.8
1,932,525 - -1.6
1,932,525 - -0.8
1,932,525 - -2.8
1,933,007 - Pf6N2E2_1633 0.38 -2.6
1,933,023 + Pf6N2E2_1633 0.39 -1.8
1,933,104 - Pf6N2E2_1633 0.47 -2.5
1,933,254 - Pf6N2E2_1633 0.61 -2.8
1,933,290 + Pf6N2E2_1633 0.64 -1.0
1,933,524 - Pf6N2E2_1633 0.87 -2.7
1,934,053 + Pf6N2E2_1634 0.41 -0.8
1,934,053 + Pf6N2E2_1634 0.41 -1.0
1,934,053 + Pf6N2E2_1634 0.41 -0.5
1,934,054 - Pf6N2E2_1634 0.41 -4.1
1,934,163 - Pf6N2E2_1634 0.52 +1.0
1,934,163 - Pf6N2E2_1634 0.52 -0.4
1,934,163 - Pf6N2E2_1634 0.52 -1.2
1,934,300 + Pf6N2E2_1634 0.66 -0.5
1,934,301 - Pf6N2E2_1634 0.66 -2.7
1,934,301 - Pf6N2E2_1634 0.66 -1.1
1,934,513 - Pf6N2E2_1634 0.88 -2.6
1,934,513 - Pf6N2E2_1634 0.88 -1.2
1,934,547 + -0.5
1,934,547 + -2.2
1,934,547 + -1.8
1,934,547 + -1.7
1,934,548 - -2.1
1,934,548 - -2.9
1,934,548 - -2.0

Or see this region's nucleotide sequence