Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1088 and Pf6N2E2_1089 are separated by 234 nucleotides Pf6N2E2_1089 and Pf6N2E2_1090 are separated by 100 nucleotides
Pf6N2E2_1088 - hypothetical protein, at 1,271,536 to 1,276,368
_1088
Pf6N2E2_1089 - Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1), at 1,276,603 to 1,277,634
_1089
Pf6N2E2_1090 - Transcriptional regulator for ferulate or vanillate catabolism, at 1,277,735 to 1,278,448
_1090
Position (kb)
1276
1277
1278 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1275.665 kb on + strand, within Pf6N2E2_1088 at 1275.817 kb on + strand, within Pf6N2E2_1088 at 1275.817 kb on + strand, within Pf6N2E2_1088 at 1275.818 kb on - strand, within Pf6N2E2_1088 at 1276.330 kb on + strand at 1276.343 kb on - strand at 1276.454 kb on + strand at 1276.454 kb on + strand at 1276.458 kb on + strand at 1276.458 kb on + strand at 1276.458 kb on + strand at 1276.458 kb on + strand at 1276.458 kb on + strand at 1276.458 kb on + strand at 1276.458 kb on + strand at 1276.459 kb on - strand at 1276.459 kb on - strand at 1276.459 kb on - strand at 1276.459 kb on - strand at 1276.459 kb on - strand at 1276.542 kb on + strand at 1276.543 kb on - strand at 1276.563 kb on + strand at 1276.563 kb on + strand at 1276.574 kb on + strand at 1276.575 kb on - strand at 1276.787 kb on - strand, within Pf6N2E2_1089 at 1276.787 kb on - strand, within Pf6N2E2_1089 at 1277.017 kb on + strand, within Pf6N2E2_1089 at 1277.583 kb on + strand at 1277.584 kb on - strand at 1277.700 kb on + strand at 1277.700 kb on + strand at 1277.701 kb on - strand at 1277.701 kb on - strand at 1277.703 kb on + strand at 1277.703 kb on + strand at 1277.703 kb on + strand at 1277.704 kb on - strand at 1277.740 kb on + strand at 1277.741 kb on - strand at 1277.823 kb on + strand, within Pf6N2E2_1090 at 1278.092 kb on + strand, within Pf6N2E2_1090 at 1278.092 kb on + strand, within Pf6N2E2_1090 at 1278.093 kb on - strand, within Pf6N2E2_1090 at 1278.281 kb on + strand, within Pf6N2E2_1090 at 1278.281 kb on + strand, within Pf6N2E2_1090 at 1278.281 kb on + strand, within Pf6N2E2_1090 at 1278.282 kb on - strand, within Pf6N2E2_1090 at 1278.289 kb on + strand, within Pf6N2E2_1090 at 1278.289 kb on + strand, within Pf6N2E2_1090 at 1278.289 kb on + strand, within Pf6N2E2_1090 at 1278.289 kb on + strand, within Pf6N2E2_1090 at 1278.468 kb on + strand at 1278.468 kb on + strand at 1278.468 kb on + strand at 1278.468 kb on + strand at 1278.469 kb on - strand at 1278.537 kb on + strand at 1278.537 kb on + strand at 1278.538 kb on - strand at 1278.538 kb on - strand at 1278.550 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 1,275,665 + Pf6N2E2_1088 0.85 +0.8 1,275,817 + Pf6N2E2_1088 0.89 -1.1 1,275,817 + Pf6N2E2_1088 0.89 +0.9 1,275,818 - Pf6N2E2_1088 0.89 -0.3 1,276,330 + -0.8 1,276,343 - -0.3 1,276,454 + +0.9 1,276,454 + +0.7 1,276,458 + -0.3 1,276,458 + -0.0 1,276,458 + +0.4 1,276,458 + -0.1 1,276,458 + -0.2 1,276,458 + -1.7 1,276,458 + -0.1 1,276,459 - +0.0 1,276,459 - +1.6 1,276,459 - +0.2 1,276,459 - +0.1 1,276,459 - +0.1 1,276,542 + +2.0 1,276,543 - +2.0 1,276,563 + -1.8 1,276,563 + -0.8 1,276,574 + -0.9 1,276,575 - +0.9 1,276,787 - Pf6N2E2_1089 0.18 -0.6 1,276,787 - Pf6N2E2_1089 0.18 -0.3 1,277,017 + Pf6N2E2_1089 0.40 -1.2 1,277,583 + -0.4 1,277,584 - -0.9 1,277,700 + -2.1 1,277,700 + -1.8 1,277,701 - +0.4 1,277,701 - +0.4 1,277,703 + +0.5 1,277,703 + -0.1 1,277,703 + +0.9 1,277,704 - +0.5 1,277,740 + -0.3 1,277,741 - -1.1 1,277,823 + Pf6N2E2_1090 0.12 +0.1 1,278,092 + Pf6N2E2_1090 0.50 +0.7 1,278,092 + Pf6N2E2_1090 0.50 -0.9 1,278,093 - Pf6N2E2_1090 0.50 +1.1 1,278,281 + Pf6N2E2_1090 0.76 +1.2 1,278,281 + Pf6N2E2_1090 0.76 +0.2 1,278,281 + Pf6N2E2_1090 0.76 +0.2 1,278,282 - Pf6N2E2_1090 0.77 +2.0 1,278,289 + Pf6N2E2_1090 0.78 +0.0 1,278,289 + Pf6N2E2_1090 0.78 -0.4 1,278,289 + Pf6N2E2_1090 0.78 +0.9 1,278,289 + Pf6N2E2_1090 0.78 -0.3 1,278,468 + -2.2 1,278,468 + +0.7 1,278,468 + +2.2 1,278,468 + -2.1 1,278,469 - +2.2 1,278,537 + -0.3 1,278,537 + -0.2 1,278,538 - +0.6 1,278,538 - +0.9 1,278,550 + -0.7
Or see this region's nucleotide sequence