Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28175

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
6,273,482	-		PFLU_RS28170	0.13	-1.6
6,273,482	-		PFLU_RS28170	0.13	-1.2
6,273,726	+		PFLU_RS28170	0.36	-0.8
6,273,726	+		PFLU_RS28170	0.36	+0.9
6,273,726	+		PFLU_RS28170	0.36	-1.1
6,273,726	+		PFLU_RS28170	0.36	-0.2
6,273,726	+		PFLU_RS28170	0.36	-1.5
6,273,727	-		PFLU_RS28170	0.36	-1.4
6,273,727	-		PFLU_RS28170	0.36	-0.6
6,273,755	+		PFLU_RS28170	0.39	-0.6
6,273,755	+		PFLU_RS28170	0.39	-0.5
6,273,756	-		PFLU_RS28170	0.39	+0.4
6,273,756	-		PFLU_RS28170	0.39	+0.6
6,273,756	-		PFLU_RS28170	0.39	-1.0
6,273,762	+		PFLU_RS28170	0.39	-0.7
6,273,762	+		PFLU_RS28170	0.39	+0.2
6,273,762	+		PFLU_RS28170	0.39	-0.2
6,273,762	+		PFLU_RS28170	0.39	+0.6
6,273,762	+		PFLU_RS28170	0.39	+0.2
6,273,763	-		PFLU_RS28170	0.39	-0.4
6,273,763	-		PFLU_RS28170	0.39	-1.3
6,273,906	+		PFLU_RS28170	0.53	-1.1
6,273,906	+		PFLU_RS28170	0.53	-0.8
6,273,906	+		PFLU_RS28170	0.53	-0.5
6,273,921	+		PFLU_RS28170	0.54	+0.1
6,273,921	+		PFLU_RS28170	0.54	-1.9
6,273,921	+		PFLU_RS28170	0.54	-2.7
6,273,922	-		PFLU_RS28170	0.54	-0.3
6,273,922	-		PFLU_RS28170	0.54	-0.4
6,273,922	-		PFLU_RS28170	0.54	+1.2
6,273,922	-		PFLU_RS28170	0.54	-0.0
6,273,922	-		PFLU_RS28170	0.54	-0.5
6,274,002	+		PFLU_RS28170	0.61	+1.0
6,274,002	+		PFLU_RS28170	0.61	+1.0
6,274,002	+		PFLU_RS28170	0.61	+1.2
6,274,002	+		PFLU_RS28170	0.61	-2.4
6,274,002	+		PFLU_RS28170	0.61	-1.9
6,274,002	+		PFLU_RS28170	0.61	-1.2
6,274,003	-		PFLU_RS28170	0.62	-1.4
6,274,003	-		PFLU_RS28170	0.62	+0.0
6,274,003	-		PFLU_RS28170	0.62	+0.7
6,274,070	+		PFLU_RS28170	0.68	+0.7
6,274,149	+		PFLU_RS28170	0.75	-0.4
6,274,149	+		PFLU_RS28170	0.75	+2.0
6,274,149	+		PFLU_RS28170	0.75	-1.7
6,274,150	-		PFLU_RS28170	0.75	+0.3
6,274,150	-		PFLU_RS28170	0.75	-0.1
6,274,150	-		PFLU_RS28170	0.75	+1.1
6,274,150	-		PFLU_RS28170	0.75	+0.1
6,274,150	-		PFLU_RS28170	0.75	-0.1
6,274,150	-		PFLU_RS28170	0.75	+0.6
6,274,171	+		PFLU_RS28170	0.77	+0.9
6,274,210	-		PFLU_RS28170	0.81	+1.0
6,274,218	+		PFLU_RS28170	0.81	+0.6
6,274,218	+		PFLU_RS28170	0.81	-2.2
6,274,351	+				+1.2
6,274,352	-				-0.1
6,274,352	-				-0.6
6,274,352	-				-0.8
6,274,386	+				-1.1
6,274,386	+				-0.3
6,274,386	+				+1.1
6,274,386	+				-1.9
6,274,386	+				-0.4
6,274,387	-				-0.6
6,274,387	-				+0.5
6,274,387	-				+0.7
6,274,387	-				+0.4
6,274,416	+				+2.3
6,274,416	+				-2.0
6,274,416	+				+1.9
6,274,417	-				+1.8
6,274,470	+				-0.5
6,274,471	-				-0.0
6,274,520	+				-1.3
6,274,520	+				-1.0
6,274,520	+				+0.3
6,274,520	+				-0.4
6,274,520	+				+1.3
6,274,520	+				-1.8
6,274,520	+				+0.4
6,274,520	+				+0.4
6,274,520	+				-0.3
6,274,521	-				+1.1
6,274,521	-				-0.5
6,274,521	-				+0.4
6,274,521	-				-0.0
6,274,521	-				-1.6
6,274,521	-				-0.7
6,274,521	-				-1.0
6,274,521	-				-0.3
6,274,521	-				-0.0
6,274,521	-				-0.9
6,274,521	-				-0.5
6,274,542	+				-1.2
6,274,542	+				-0.2
6,274,543	-				+1.3
6,274,543	-				+1.2
6,274,584	+		PFLU_RS28175	0.13	+0.5
6,274,584	+		PFLU_RS28175	0.13	-1.5
6,274,584	+		PFLU_RS28175	0.13	-0.3
6,274,584	+		PFLU_RS28175	0.13	-0.8
6,274,584	+		PFLU_RS28175	0.13	-0.2
6,274,584	+		PFLU_RS28175	0.13	-1.3
6,274,584	+		PFLU_RS28175	0.13	-1.2
6,274,584	+		PFLU_RS28175	0.13	+1.1
6,274,584	+		PFLU_RS28175	0.13	-0.5
6,274,584	+		PFLU_RS28175	0.13	-0.8
6,274,584	+		PFLU_RS28175	0.13	-0.4
6,274,584	+		PFLU_RS28175	0.13	+0.9
6,274,584	+		PFLU_RS28175	0.13	-0.2
6,274,584	+		PFLU_RS28175	0.13	-1.8
6,274,584	+		PFLU_RS28175	0.13	-0.8
6,274,584	+		PFLU_RS28175	0.13	-1.5
6,274,584	+		PFLU_RS28175	0.13	+0.4
6,274,584	+		PFLU_RS28175	0.13	-1.7
6,274,584	+		PFLU_RS28175	0.13	-0.0
6,274,585	-		PFLU_RS28175	0.13	-0.9
6,274,585	-		PFLU_RS28175	0.13	+1.0
6,274,585	-		PFLU_RS28175	0.13	+1.1
6,274,585	-		PFLU_RS28175	0.13	-0.0
6,274,585	-		PFLU_RS28175	0.13	+2.2
6,274,585	-		PFLU_RS28175	0.13	-0.2
6,274,585	-		PFLU_RS28175	0.13	-0.8
6,274,585	-		PFLU_RS28175	0.13	-0.6
6,274,585	-		PFLU_RS28175	0.13	+0.2
6,274,585	-		PFLU_RS28175	0.13	+0.7
6,274,585	-		PFLU_RS28175	0.13	+0.7
6,274,585	-		PFLU_RS28175	0.13	+0.2
6,274,590	+		PFLU_RS28175	0.14	-0.0
6,274,590	+		PFLU_RS28175	0.14	-1.2
6,274,590	+		PFLU_RS28175	0.14	-1.7
6,274,590	+		PFLU_RS28175	0.14	-0.1
6,274,591	-		PFLU_RS28175	0.14	-1.0
6,274,591	-		PFLU_RS28175	0.14	+2.0
6,274,591	-		PFLU_RS28175	0.14	+0.3
6,274,623	+		PFLU_RS28175	0.18	-1.3
6,274,624	-		PFLU_RS28175	0.18	+1.0
6,274,774	+		PFLU_RS28175	0.37	-0.6
6,274,774	+		PFLU_RS28175	0.37	+1.4
6,274,774	+		PFLU_RS28175	0.37	+0.3
6,274,774	+		PFLU_RS28175	0.37	+1.1
6,274,774	+		PFLU_RS28175	0.37	+1.2
6,274,774	+		PFLU_RS28175	0.37	+1.7
6,274,774	+		PFLU_RS28175	0.37	-3.1
6,274,774	+		PFLU_RS28175	0.37	+1.0
6,274,774	+		PFLU_RS28175	0.37	+0.1
6,274,774	+		PFLU_RS28175	0.37	-1.9
6,274,774	+		PFLU_RS28175	0.37	+1.2
6,274,774	+		PFLU_RS28175	0.37	+0.7
6,274,774	+		PFLU_RS28175	0.37	-0.0
6,274,774	+		PFLU_RS28175	0.37	-2.3
6,274,774	+		PFLU_RS28175	0.37	+1.3
6,274,774	+		PFLU_RS28175	0.37	-0.0
6,274,774	+		PFLU_RS28175	0.37	-1.9
6,274,774	+		PFLU_RS28175	0.37	+0.1
6,274,774	+		PFLU_RS28175	0.37	+0.6
6,274,775	-		PFLU_RS28175	0.37	-0.9
6,274,775	-		PFLU_RS28175	0.37	+0.5
6,274,775	-		PFLU_RS28175	0.37	-0.9
6,274,775	-		PFLU_RS28175	0.37	-1.8
6,274,775	-		PFLU_RS28175	0.37	-1.0
6,274,775	-		PFLU_RS28175	0.37	-2.0
6,274,775	-		PFLU_RS28175	0.37	-0.1
6,274,775	-		PFLU_RS28175	0.37	-0.6
6,274,775	-		PFLU_RS28175	0.37	+0.5
6,274,775	-		PFLU_RS28175	0.37	+0.9
6,274,775	-		PFLU_RS28175	0.37	-1.0
6,274,775	-		PFLU_RS28175	0.37	+1.4
6,274,775	-		PFLU_RS28175	0.37	+0.7
6,274,775	-		PFLU_RS28175	0.37	-1.7
6,274,775	-		PFLU_RS28175	0.37	-2.6
6,274,775	-		PFLU_RS28175	0.37	-2.1
6,274,775	-		PFLU_RS28175	0.37	-0.2
6,274,775	-		PFLU_RS28175	0.37	+0.8
6,274,775	-		PFLU_RS28175	0.37	+0.8
6,274,775	-		PFLU_RS28175	0.37	-0.5
6,274,775	-		PFLU_RS28175	0.37	-2.2
6,274,775	-		PFLU_RS28175	0.37	+0.2
6,274,776	+		PFLU_RS28175	0.37	+0.4
6,274,777	-		PFLU_RS28175	0.37	-1.0
6,274,818	+		PFLU_RS28175	0.42	+2.0
6,274,818	+		PFLU_RS28175	0.42	+0.7
6,274,818	+		PFLU_RS28175	0.42	-0.3
6,274,818	+		PFLU_RS28175	0.42	+0.2
6,274,818	+		PFLU_RS28175	0.42	-0.3
6,274,818	+		PFLU_RS28175	0.42	-3.0
6,274,818	+		PFLU_RS28175	0.42	+0.9
6,274,818	+		PFLU_RS28175	0.42	-1.2
6,274,818	+		PFLU_RS28175	0.42	-1.6
6,274,818	+		PFLU_RS28175	0.42	+2.3
6,274,818	+		PFLU_RS28175	0.42	+0.2
6,274,818	+		PFLU_RS28175	0.42	-1.0
6,274,819	-		PFLU_RS28175	0.43	+1.6
6,274,819	-		PFLU_RS28175	0.43	-0.1
6,274,819	-		PFLU_RS28175	0.43	-2.5
6,274,819	-		PFLU_RS28175	0.43	-1.2
6,274,819	-		PFLU_RS28175	0.43	-3.1
6,274,819	-		PFLU_RS28175	0.43	-2.9
6,274,819	-		PFLU_RS28175	0.43	-0.5
6,274,894	-		PFLU_RS28175	0.52	-0.6
6,274,894	-		PFLU_RS28175	0.52	-0.2
6,274,894	-		PFLU_RS28175	0.52	-0.5
6,274,894	-		PFLU_RS28175	0.52	+0.2
6,274,894	-		PFLU_RS28175	0.52	-0.8
6,274,899	+		PFLU_RS28175	0.53	+1.0
6,274,899	+		PFLU_RS28175	0.53	-0.8
6,274,899	+		PFLU_RS28175	0.53	-0.8
6,274,899	+		PFLU_RS28175	0.53	-0.7
6,274,900	-		PFLU_RS28175	0.53	-1.9
6,274,900	-		PFLU_RS28175	0.53	-0.8
6,274,900	-		PFLU_RS28175	0.53	-0.1
6,274,975	+		PFLU_RS28175	0.62	+0.5
6,274,975	+		PFLU_RS28175	0.62	-1.5
6,274,975	+		PFLU_RS28175	0.62	+0.1
6,274,975	+		PFLU_RS28175	0.62	-0.1
6,274,975	+		PFLU_RS28175	0.62	-1.3
6,274,975	+		PFLU_RS28175	0.62	-0.5
6,274,976	-		PFLU_RS28175	0.62	-1.3
6,274,976	-		PFLU_RS28175	0.62	-0.3
6,274,976	-		PFLU_RS28175	0.62	-0.6
6,274,976	-		PFLU_RS28175	0.62	-0.7
6,274,976	-		PFLU_RS28175	0.62	-0.3
6,275,137	+		PFLU_RS28175	0.83	-0.9
6,275,137	+		PFLU_RS28175	0.83	-1.9
6,275,137	+		PFLU_RS28175	0.83	+0.5
6,275,138	-		PFLU_RS28175	0.83	+0.2
6,275,138	-		PFLU_RS28175	0.83	-1.2
6,275,138	-		PFLU_RS28175	0.83	+0.6
6,275,138	-		PFLU_RS28175	0.83	+0.1
6,275,184	+		PFLU_RS28175	0.89	+0.8
6,275,184	+		PFLU_RS28175	0.89	-1.0
6,275,185	-		PFLU_RS28175	0.89	-1.2
6,275,185	-		PFLU_RS28175	0.89	-2.3
6,275,185	-		PFLU_RS28175	0.89	+0.6
6,275,185	-		PFLU_RS28175	0.89	-1.7
6,275,185	-		PFLU_RS28175	0.89	-1.7
6,275,185	-		PFLU_RS28175	0.89	-0.0
6,275,185	-		PFLU_RS28175	0.89	-2.1
6,275,185	-		PFLU_RS28175	0.89	+0.6
6,275,205	+				-1.8
6,275,205	+				-0.5
6,275,205	+				-0.8
6,275,205	+				-0.0
6,275,206	-				-1.0
6,275,206	-				+1.6
6,275,206	-				+0.2
6,275,206	-				+0.7
6,275,206	-				-0.8
6,275,206	-				+0.4
6,275,206	-				+0.6
6,275,206	-				+1.7
6,275,206	-				-0.2
6,275,225	+				-0.5
6,275,226	-				-1.2
6,275,226	-				+0.4
6,275,226	-				-1.8
6,275,226	-				-0.1
6,275,226	-				-0.3
6,275,283	+				-0.2
6,275,283	+				+1.1
6,275,283	+				-1.3
6,275,284	-				+1.0
6,275,284	-				+0.6
6,275,284	-				-0.3
6,275,284	-				-0.2
6,275,284	-				+0.4
6,275,284	-				+0.1
6,275,284	-				+1.0
6,275,285	+				-1.3
6,275,285	+				-1.6
6,275,286	-				-0.3
6,275,286	-				+1.2
6,275,429	+				+1.0
6,275,430	-				+1.3
6,275,456	-				-0.8
6,275,456	-				-1.3
6,275,456	-				+1.2
6,275,475	+				+1.6
6,275,475	+				+0.3
6,275,476	-				+0.7
6,275,479	+				-1.1
6,275,480	-				+0.3
6,275,480	-				+0.3
6,275,480	-				+0.3
6,275,480	-				-1.0
6,275,480	-				+0.7
6,275,480	-				-1.2
6,275,490	+				+0.8
6,275,490	+				+2.6
6,275,490	+				-1.0
6,275,490	+				-1.5
6,275,490	+				+0.7
6,275,490	+				-2.2
6,275,491	-				+0.4
6,275,491	-				-0.3
6,275,491	-				+1.8
6,275,491	-				-2.3
6,275,529	+				-0.6
6,275,529	+				+2.0
6,275,530	-				+0.4
6,275,530	-				+1.1
6,275,555	+				+0.2
6,275,557	+				+2.4
6,275,558	-				+1.4
6,275,566	+				+0.5
6,275,567	-				-0.5
6,275,638	+				+1.7
6,275,638	+				-2.3
6,275,639	-				-1.3
6,275,639	-				+1.6
6,275,639	-				+0.4
6,275,639	-				-0.8
6,275,639	-				+0.1
6,275,644	+				+0.7
6,275,644	+				-1.7
6,275,644	+				+1.5
6,275,644	+				+1.5
6,275,645	-				+1.6
6,275,645	-				+0.2
6,275,740	-		PFLU_RS28180	0.13	-1.8
6,275,798	+		PFLU_RS28180	0.16	+0.5
6,275,798	+		PFLU_RS28180	0.16	-0.1
6,275,799	-		PFLU_RS28180	0.16	-0.1
6,275,799	-		PFLU_RS28180	0.16	-1.3
6,275,799	-		PFLU_RS28180	0.16	+3.5
6,275,799	-		PFLU_RS28180	0.16	-1.2
6,275,799	-		PFLU_RS28180	0.16	+0.8
6,275,799	-		PFLU_RS28180	0.16	+0.4
6,276,265	+		PFLU_RS28180	0.41	+1.3