Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24715

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
5,537,014	+		PFLU_RS24710	0.54	-2.8
5,537,014	+		PFLU_RS24710	0.54	-2.1
5,537,107	+		PFLU_RS24710	0.59	-0.4
5,537,107	+		PFLU_RS24710	0.59	+0.5
5,537,134	+		PFLU_RS24710	0.61	+0.4
5,537,134	+		PFLU_RS24710	0.61	-2.4
5,537,323	+		PFLU_RS24710	0.73	-0.1
5,537,323	+		PFLU_RS24710	0.73	+0.7
5,537,323	+		PFLU_RS24710	0.73	+0.4
5,537,323	+		PFLU_RS24710	0.73	+0.9
5,537,324	-		PFLU_RS24710	0.73	-2.1
5,537,324	-		PFLU_RS24710	0.73	-2.0
5,537,324	-		PFLU_RS24710	0.73	-0.1
5,537,324	-		PFLU_RS24710	0.73	-2.5
5,537,324	-		PFLU_RS24710	0.73	-1.0
5,537,324	-		PFLU_RS24710	0.73	-1.9
5,537,324	-		PFLU_RS24710	0.73	-1.2
5,537,344	+		PFLU_RS24710	0.74	+0.0
5,537,345	-		PFLU_RS24710	0.74	-1.9
5,537,404	+		PFLU_RS24710	0.77	-1.3
5,537,404	+		PFLU_RS24710	0.77	-0.8
5,537,404	+		PFLU_RS24710	0.77	-0.4
5,537,404	+		PFLU_RS24710	0.77	-1.0
5,537,404	+		PFLU_RS24710	0.77	-0.6
5,537,404	+		PFLU_RS24710	0.77	-0.4
5,537,404	+		PFLU_RS24710	0.77	-0.6
5,537,404	+		PFLU_RS24710	0.77	+0.6
5,537,404	+		PFLU_RS24710	0.77	-0.5
5,537,405	-		PFLU_RS24710	0.78	-2.1
5,537,405	-		PFLU_RS24710	0.78	-3.7
5,537,405	-		PFLU_RS24710	0.78	-2.2
5,537,405	-		PFLU_RS24710	0.78	-1.0
5,537,405	-		PFLU_RS24710	0.78	-2.3
5,537,405	-		PFLU_RS24710	0.78	-1.7
5,537,557	+		PFLU_RS24710	0.87	-1.2
5,537,557	+		PFLU_RS24710	0.87	+2.3
5,537,557	+		PFLU_RS24710	0.87	-1.5
5,537,558	-		PFLU_RS24710	0.87	-1.9
5,537,558	-		PFLU_RS24710	0.87	-1.7
5,537,575	+		PFLU_RS24710	0.88	-1.2
5,537,575	+		PFLU_RS24710	0.88	+0.4
5,537,575	+		PFLU_RS24710	0.88	+0.5
5,537,575	+		PFLU_RS24710	0.88	-0.9
5,537,576	-		PFLU_RS24710	0.88	-3.3
5,537,576	-		PFLU_RS24710	0.88	-2.6
5,537,576	-		PFLU_RS24710	0.88	-2.2
5,537,578	+		PFLU_RS24710	0.88	-0.2
5,537,578	+		PFLU_RS24710	0.88	-0.4
5,537,578	+		PFLU_RS24710	0.88	-2.7
5,537,578	+		PFLU_RS24710	0.88	+0.0
5,537,578	+		PFLU_RS24710	0.88	-0.7
5,537,579	-		PFLU_RS24710	0.88	-3.5
5,537,579	-		PFLU_RS24710	0.88	-1.9
5,537,579	-		PFLU_RS24710	0.88	+0.0
5,537,594	-		PFLU_RS24710	0.89	-1.4
5,537,665	+				-3.0
5,537,666	-				-0.4
5,537,666	-				-1.0
5,537,738	-				-2.5
5,537,746	+				+1.8
5,537,746	+				+0.9
5,537,746	+				+1.3
5,537,746	+				-0.1
5,537,747	-				-1.3
5,537,747	-				-1.0
5,537,889	+				+0.2
5,537,889	+				-2.4
5,537,906	+				+1.2
5,538,174	-		PFLU_RS24715	0.19	+1.0
5,538,230	+		PFLU_RS24715	0.23	+0.5
5,538,230	+		PFLU_RS24715	0.23	+0.6
5,538,230	+		PFLU_RS24715	0.23	-0.7
5,538,230	+		PFLU_RS24715	0.23	+0.5
5,538,230	+		PFLU_RS24715	0.23	+1.7
5,538,230	+		PFLU_RS24715	0.23	+1.5
5,538,231	-		PFLU_RS24715	0.23	+1.0
5,538,231	-		PFLU_RS24715	0.23	-0.7
5,538,231	-		PFLU_RS24715	0.23	+0.7
5,538,231	-		PFLU_RS24715	0.23	+3.3
5,538,231	-		PFLU_RS24715	0.23	+1.9
5,538,231	-		PFLU_RS24715	0.23	+2.1
5,538,231	-		PFLU_RS24715	0.23	+2.5
5,538,231	-		PFLU_RS24715	0.23	+1.0
5,538,231	-		PFLU_RS24715	0.23	+1.0
5,538,291	+		PFLU_RS24715	0.28	+0.2
5,538,292	-		PFLU_RS24715	0.28	+0.6
5,538,292	-		PFLU_RS24715	0.28	+2.0
5,538,292	-		PFLU_RS24715	0.28	+1.3
5,538,292	-		PFLU_RS24715	0.28	+0.9
5,538,292	-		PFLU_RS24715	0.28	+0.3
5,538,315	+		PFLU_RS24715	0.29	+1.1
5,538,315	+		PFLU_RS24715	0.29	+0.6
5,538,315	+		PFLU_RS24715	0.29	-0.2
5,538,315	+		PFLU_RS24715	0.29	+2.4
5,538,316	-		PFLU_RS24715	0.29	+0.9
5,538,316	-		PFLU_RS24715	0.29	+1.5
5,538,316	-		PFLU_RS24715	0.29	+1.0
5,538,316	-		PFLU_RS24715	0.29	+0.3
5,538,374	+		PFLU_RS24715	0.33	-0.7
5,538,374	+		PFLU_RS24715	0.33	+0.6
5,538,374	+		PFLU_RS24715	0.33	+1.3
5,538,375	-		PFLU_RS24715	0.33	-0.1
5,538,375	-		PFLU_RS24715	0.33	-0.4
5,538,375	-		PFLU_RS24715	0.33	-1.0
5,538,375	-		PFLU_RS24715	0.33	+2.0
5,538,562	+		PFLU_RS24715	0.46	+0.7
5,538,562	+		PFLU_RS24715	0.46	-0.8
5,538,590	+		PFLU_RS24715	0.48	-0.1
5,538,590	+		PFLU_RS24715	0.48	+1.2
5,538,590	+		PFLU_RS24715	0.48	+0.7
5,538,590	+		PFLU_RS24715	0.48	+0.0
5,538,590	+		PFLU_RS24715	0.48	+1.2
5,538,590	+		PFLU_RS24715	0.48	+1.6
5,538,590	+		PFLU_RS24715	0.48	+0.6
5,538,590	+		PFLU_RS24715	0.48	-0.5
5,538,590	+		PFLU_RS24715	0.48	+0.0
5,538,590	+		PFLU_RS24715	0.48	-0.2
5,538,590	+		PFLU_RS24715	0.48	-1.0
5,538,590	+		PFLU_RS24715	0.48	-0.7
5,538,590	+		PFLU_RS24715	0.48	-0.4
5,538,590	+		PFLU_RS24715	0.48	+0.8
5,538,590	+		PFLU_RS24715	0.48	+1.1
5,538,590	+		PFLU_RS24715	0.48	-0.5
5,538,590	+		PFLU_RS24715	0.48	-0.5
5,538,590	+		PFLU_RS24715	0.48	+0.0
5,538,590	+		PFLU_RS24715	0.48	-1.2
5,538,590	+		PFLU_RS24715	0.48	+1.3
5,538,591	-		PFLU_RS24715	0.48	-0.3
5,538,591	-		PFLU_RS24715	0.48	+1.0
5,538,591	-		PFLU_RS24715	0.48	-0.7
5,538,591	-		PFLU_RS24715	0.48	-2.6
5,538,591	-		PFLU_RS24715	0.48	+3.8
5,538,591	-		PFLU_RS24715	0.48	+0.5
5,538,591	-		PFLU_RS24715	0.48	+1.6
5,538,591	-		PFLU_RS24715	0.48	+0.5
5,538,591	-		PFLU_RS24715	0.48	+1.9
5,538,591	-		PFLU_RS24715	0.48	+0.8
5,538,591	-		PFLU_RS24715	0.48	-1.9
5,538,626	+		PFLU_RS24715	0.51	+0.7
5,538,627	-		PFLU_RS24715	0.51	-0.9
5,538,627	-		PFLU_RS24715	0.51	+0.7
5,538,660	+		PFLU_RS24715	0.53	-0.4
5,538,668	+		PFLU_RS24715	0.54	+1.6
5,538,668	+		PFLU_RS24715	0.54	+0.4
5,538,668	+		PFLU_RS24715	0.54	-0.3
5,538,668	+		PFLU_RS24715	0.54	-1.4
5,538,669	-		PFLU_RS24715	0.54	-0.4
5,538,669	-		PFLU_RS24715	0.54	-1.1
5,538,669	-		PFLU_RS24715	0.54	+1.2
5,538,710	+		PFLU_RS24715	0.57	+0.9
5,538,710	+		PFLU_RS24715	0.57	-1.5
5,538,711	-		PFLU_RS24715	0.57	-0.4
5,538,711	-		PFLU_RS24715	0.57	-1.0
5,538,711	-		PFLU_RS24715	0.57	+0.2
5,538,939	+		PFLU_RS24715	0.72	-0.9
5,538,940	-		PFLU_RS24715	0.73	+3.0
5,539,109	+		PFLU_RS24715	0.84	-0.9
5,539,110	-		PFLU_RS24715	0.84	-0.1
5,539,322	+				+1.3
5,539,323	-				-0.9
5,539,323	-				+0.1
5,539,323	-				-1.2
5,539,323	-				-0.2
5,539,323	-				-0.7
5,539,360	+				-0.4
5,539,401	+				+1.4
5,539,402	-				-0.7
5,539,402	-				+0.7
5,539,412	-				+0.6
5,539,412	-				+0.9
5,539,412	-				+2.3
5,539,412	-				+2.1
5,539,419	-				+2.1
5,539,437	+				+2.5
5,539,438	-				+1.2
5,539,456	-				+0.2
5,539,492	-				-0.0
5,539,506	-				+1.2
5,539,584	+				+2.1
5,539,584	+				+0.1
5,539,584	+				+3.0
5,539,584	+				+2.2
5,539,584	+				+1.2
5,539,584	+				-0.7
5,539,584	+				-2.2
5,539,584	+				+3.1
5,539,584	+				+2.1
5,539,584	+				-0.5
5,539,585	-				-1.7
5,539,585	-				+0.3
5,539,585	-				+1.5
5,539,585	-				+1.6
5,539,585	-				+0.2
5,539,596	+				+2.1
5,539,596	+				+2.6
5,539,596	+				+2.4
5,539,596	+				-1.6
5,539,596	+				+0.6
5,539,596	+				+1.8
5,539,596	+				+1.8
5,539,597	-				+1.0
5,539,597	-				+1.6
5,539,597	-				+1.3
5,539,597	-				+0.6
5,539,597	-				+2.0
5,539,680	+		PFLU_RS24720	0.15	+0.5
5,539,680	+		PFLU_RS24720	0.15	+1.1
5,539,680	+		PFLU_RS24720	0.15	+1.2
5,539,680	+		PFLU_RS24720	0.15	+1.7
5,539,680	+		PFLU_RS24720	0.15	+1.3
5,539,680	+		PFLU_RS24720	0.15	+2.2
5,539,680	+		PFLU_RS24720	0.15	+2.2
5,539,680	+		PFLU_RS24720	0.15	+1.9
5,539,680	+		PFLU_RS24720	0.15	-2.4
5,539,681	-		PFLU_RS24720	0.15	-0.9
5,539,681	-		PFLU_RS24720	0.15	+1.1
5,539,681	-		PFLU_RS24720	0.15	-1.7
5,539,681	-		PFLU_RS24720	0.15	+0.6
5,539,681	-		PFLU_RS24720	0.15	+0.5
5,539,681	-		PFLU_RS24720	0.15	+1.2
5,539,681	-		PFLU_RS24720	0.15	+1.8
5,539,852	+		PFLU_RS24720	0.39	+2.2
5,539,852	+		PFLU_RS24720	0.39	-0.3
5,539,852	+		PFLU_RS24720	0.39	+2.7
5,539,852	+		PFLU_RS24720	0.39	-0.1
5,539,852	+		PFLU_RS24720	0.39	+1.4
5,539,852	+		PFLU_RS24720	0.39	-1.3
5,539,852	+		PFLU_RS24720	0.39	+2.8
5,539,852	+		PFLU_RS24720	0.39	+0.8
5,539,852	+		PFLU_RS24720	0.39	+1.0
5,539,852	+		PFLU_RS24720	0.39	+3.3
5,539,852	+		PFLU_RS24720	0.39	+2.6
5,539,853	-		PFLU_RS24720	0.39	+1.2
5,539,853	-		PFLU_RS24720	0.39	-0.4
5,539,853	-		PFLU_RS24720	0.39	+2.1
5,539,853	-		PFLU_RS24720	0.39	+2.7
5,539,853	-		PFLU_RS24720	0.39	-1.4
5,539,853	-		PFLU_RS24720	0.39	+2.7
5,540,052	+		PFLU_RS24720	0.68	-1.6
5,540,053	-		PFLU_RS24720	0.68	+2.0
5,540,053	-		PFLU_RS24720	0.68	+0.6
5,540,053	-		PFLU_RS24720	0.68	+2.6
5,540,092	-		PFLU_RS24720	0.73	+0.6
5,540,092	-		PFLU_RS24720	0.73	+0.0
5,540,092	-		PFLU_RS24720	0.73	+3.7
5,540,220	+				+1.0
5,540,220	+				+1.0
5,540,221	-				+1.9
5,540,237	+				+2.4
5,540,237	+				+0.2
5,540,237	+				+2.1
5,540,237	+				+2.7
5,540,237	+				+2.3
5,540,237	+				+3.2
5,540,237	+				-0.3
5,540,237	+				+1.5
5,540,237	+				+2.3
5,540,237	+				+0.4
5,540,238	-				+2.6
5,540,238	-				+0.8
5,540,238	-				+1.9
5,540,238	-				+0.6
5,540,238	-				+3.0
5,540,246	+				+0.0
5,540,246	+				+2.1
5,540,247	-				+2.2
5,540,254	-				+2.4
5,540,283	+				+2.2
5,540,283	+				+1.3
5,540,283	+				-1.2
5,540,283	+				-0.7
5,540,283	+				+0.6
5,540,283	+				+0.5
5,540,283	+				+1.2
5,540,283	+				-0.3
5,540,283	+				-0.1
5,540,283	+				+1.1
5,540,284	-				+0.7
5,540,284	-				+0.6
5,540,284	-				-1.9
5,540,284	-				-0.6
5,540,284	-				+1.0
5,540,284	-				-0.7
5,540,284	-				-0.2