Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24710

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
5,535,134	+		PFLU_RS24705	0.24	+0.6
5,535,134	+		PFLU_RS24705	0.24	+0.8
5,535,134	+		PFLU_RS24705	0.24	+0.2
5,535,134	+		PFLU_RS24705	0.24	-1.0
5,535,134	+		PFLU_RS24705	0.24	-1.1
5,535,135	-		PFLU_RS24705	0.24	+0.6
5,535,135	-		PFLU_RS24705	0.24	+1.1
5,535,135	-		PFLU_RS24705	0.24	+0.7
5,535,189	+		PFLU_RS24705	0.29	-0.4
5,535,190	-		PFLU_RS24705	0.29	+0.0
5,535,200	+		PFLU_RS24705	0.30	-2.1
5,535,200	+		PFLU_RS24705	0.30	+0.2
5,535,201	-		PFLU_RS24705	0.30	+0.6
5,535,267	-		PFLU_RS24705	0.35	+0.8
5,535,294	+		PFLU_RS24705	0.38	+0.7
5,535,294	+		PFLU_RS24705	0.38	-0.2
5,535,294	+		PFLU_RS24705	0.38	+0.2
5,535,295	-		PFLU_RS24705	0.38	-0.9
5,535,295	-		PFLU_RS24705	0.38	+0.8
5,535,295	-		PFLU_RS24705	0.38	-1.1
5,535,295	-		PFLU_RS24705	0.38	+2.2
5,535,295	-		PFLU_RS24705	0.38	+0.6
5,535,305	+		PFLU_RS24705	0.38	+0.4
5,535,306	-		PFLU_RS24705	0.38	+0.0
5,535,440	+		PFLU_RS24705	0.49	-2.0
5,535,440	+		PFLU_RS24705	0.49	-0.1
5,535,440	+		PFLU_RS24705	0.49	-1.1
5,535,440	+		PFLU_RS24705	0.49	-0.6
5,535,440	+		PFLU_RS24705	0.49	+1.1
5,535,440	+		PFLU_RS24705	0.49	-1.5
5,535,440	+		PFLU_RS24705	0.49	+0.6
5,535,441	-		PFLU_RS24705	0.50	+0.6
5,535,441	-		PFLU_RS24705	0.50	-0.9
5,535,441	-		PFLU_RS24705	0.50	+1.0
5,535,515	+		PFLU_RS24705	0.56	-0.4
5,535,515	+		PFLU_RS24705	0.56	+0.1
5,535,516	-		PFLU_RS24705	0.56	+1.1
5,535,527	+		PFLU_RS24705	0.57	+2.0
5,535,527	+		PFLU_RS24705	0.57	-0.1
5,535,528	-		PFLU_RS24705	0.57	-0.2
5,535,554	+		PFLU_RS24705	0.59	+0.5
5,535,554	+		PFLU_RS24705	0.59	+1.6
5,535,554	+		PFLU_RS24705	0.59	-1.1
5,535,554	+		PFLU_RS24705	0.59	+0.3
5,535,554	+		PFLU_RS24705	0.59	+1.1
5,535,555	-		PFLU_RS24705	0.59	+0.0
5,535,555	-		PFLU_RS24705	0.59	-0.7
5,535,555	-		PFLU_RS24705	0.59	-0.6
5,535,555	-		PFLU_RS24705	0.59	-0.7
5,535,555	-		PFLU_RS24705	0.59	-0.4
5,535,555	-		PFLU_RS24705	0.59	-1.1
5,535,555	-		PFLU_RS24705	0.59	-0.1
5,535,555	-		PFLU_RS24705	0.59	+0.1
5,535,555	-		PFLU_RS24705	0.59	+1.3
5,535,555	-		PFLU_RS24705	0.59	-0.6
5,535,560	+		PFLU_RS24705	0.59	+1.5
5,535,560	+		PFLU_RS24705	0.59	-0.3
5,535,560	+		PFLU_RS24705	0.59	-0.4
5,535,560	+		PFLU_RS24705	0.59	-1.7
5,535,560	+		PFLU_RS24705	0.59	+2.3
5,535,560	+		PFLU_RS24705	0.59	+0.7
5,535,561	-		PFLU_RS24705	0.59	+0.9
5,535,620	+		PFLU_RS24705	0.64	-0.7
5,535,620	+		PFLU_RS24705	0.64	-1.2
5,535,621	-		PFLU_RS24705	0.64	+0.6
5,535,623	+		PFLU_RS24705	0.64	+0.2
5,535,623	+		PFLU_RS24705	0.64	-2.9
5,535,623	+		PFLU_RS24705	0.64	-0.2
5,535,623	+		PFLU_RS24705	0.64	+0.1
5,535,623	+		PFLU_RS24705	0.64	-0.9
5,535,624	-		PFLU_RS24705	0.65	+2.6
5,535,624	-		PFLU_RS24705	0.65	+1.0
5,535,624	-		PFLU_RS24705	0.65	+1.4
5,535,624	-		PFLU_RS24705	0.65	-1.7
5,535,624	-		PFLU_RS24705	0.65	-0.7
5,535,624	-		PFLU_RS24705	0.65	+0.8
5,535,624	-		PFLU_RS24705	0.65	-0.1
5,535,624	-		PFLU_RS24705	0.65	-1.6
5,535,624	-		PFLU_RS24705	0.65	+1.0
5,535,636	+		PFLU_RS24705	0.66	-0.7
5,535,636	+		PFLU_RS24705	0.66	+0.7
5,535,636	+		PFLU_RS24705	0.66	-2.6
5,535,636	+		PFLU_RS24705	0.66	-1.9
5,535,637	-		PFLU_RS24705	0.66	+0.9
5,535,637	-		PFLU_RS24705	0.66	-0.4
5,535,637	-		PFLU_RS24705	0.66	+0.5
5,535,637	-		PFLU_RS24705	0.66	+1.1
5,535,637	-		PFLU_RS24705	0.66	+2.0
5,535,637	-		PFLU_RS24705	0.66	+1.6
5,535,637	-		PFLU_RS24705	0.66	+2.0
5,535,637	-		PFLU_RS24705	0.66	+0.2
5,535,648	+		PFLU_RS24705	0.67	-0.5
5,535,649	-		PFLU_RS24705	0.67	-0.4
5,535,649	-		PFLU_RS24705	0.67	+0.1
5,535,649	-		PFLU_RS24705	0.67	-0.3
5,535,649	-		PFLU_RS24705	0.67	+0.9
5,535,656	+		PFLU_RS24705	0.67	+1.3
5,535,656	+		PFLU_RS24705	0.67	+0.0
5,535,656	+		PFLU_RS24705	0.67	-0.5
5,535,656	+		PFLU_RS24705	0.67	+0.4
5,535,656	+		PFLU_RS24705	0.67	+2.0
5,535,656	+		PFLU_RS24705	0.67	-1.0
5,535,656	+		PFLU_RS24705	0.67	-1.0
5,535,656	+		PFLU_RS24705	0.67	+0.2
5,535,657	-		PFLU_RS24705	0.67	+0.4
5,535,657	-		PFLU_RS24705	0.67	-1.6
5,535,657	-		PFLU_RS24705	0.67	+0.7
5,535,657	-		PFLU_RS24705	0.67	-0.8
5,535,657	-		PFLU_RS24705	0.67	+1.1
5,535,657	-		PFLU_RS24705	0.67	-0.7
5,535,660	-		PFLU_RS24705	0.67	-0.6
5,535,719	+		PFLU_RS24705	0.72	+0.9
5,535,719	+		PFLU_RS24705	0.72	+0.6
5,535,719	+		PFLU_RS24705	0.72	-2.4
5,535,719	+		PFLU_RS24705	0.72	+0.4
5,535,719	+		PFLU_RS24705	0.72	+1.2
5,535,719	+		PFLU_RS24705	0.72	+0.2
5,535,719	+		PFLU_RS24705	0.72	-0.7
5,535,719	+		PFLU_RS24705	0.72	-1.4
5,535,719	+		PFLU_RS24705	0.72	+0.6
5,535,719	+		PFLU_RS24705	0.72	-2.2
5,535,719	+		PFLU_RS24705	0.72	+0.0
5,535,719	+		PFLU_RS24705	0.72	+1.6
5,535,720	-		PFLU_RS24705	0.72	-0.4
5,535,720	-		PFLU_RS24705	0.72	+0.3
5,535,720	-		PFLU_RS24705	0.72	+0.8
5,535,720	-		PFLU_RS24705	0.72	-1.4
5,535,779	+		PFLU_RS24705	0.77	-1.7
5,535,779	+		PFLU_RS24705	0.77	-0.4
5,535,779	+		PFLU_RS24705	0.77	+0.3
5,535,779	+		PFLU_RS24705	0.77	-1.6
5,535,779	+		PFLU_RS24705	0.77	+0.1
5,535,779	+		PFLU_RS24705	0.77	-2.4
5,535,779	+		PFLU_RS24705	0.77	+1.6
5,535,780	-		PFLU_RS24705	0.77	+2.2
5,535,788	+		PFLU_RS24705	0.78	+2.1
5,535,788	+		PFLU_RS24705	0.78	+0.7
5,535,788	+		PFLU_RS24705	0.78	-0.4
5,535,788	+		PFLU_RS24705	0.78	+0.7
5,535,789	-		PFLU_RS24705	0.78	+0.2
5,535,789	-		PFLU_RS24705	0.78	-1.0
5,535,789	-		PFLU_RS24705	0.78	+0.0
5,535,789	-		PFLU_RS24705	0.78	+0.2
5,535,869	+		PFLU_RS24705	0.85	+1.3
5,535,896	+		PFLU_RS24705	0.87	-0.4
5,535,896	+		PFLU_RS24705	0.87	-1.0
5,535,896	+		PFLU_RS24705	0.87	+0.2
5,535,896	+		PFLU_RS24705	0.87	-0.5
5,535,896	+		PFLU_RS24705	0.87	+1.2
5,535,896	+		PFLU_RS24705	0.87	+0.6
5,535,896	+		PFLU_RS24705	0.87	+3.2
5,535,897	-		PFLU_RS24705	0.87	+1.1
5,535,897	-		PFLU_RS24705	0.87	-0.5
5,535,897	-		PFLU_RS24705	0.87	+0.0
5,535,897	-		PFLU_RS24705	0.87	+1.6
5,535,974	+				-0.7
5,535,975	-				+1.7
5,536,043	-				+0.0
5,536,043	-				-0.7
5,536,043	-				+0.0
5,536,043	-				-1.7
5,536,075	+				+1.3
5,536,076	-				-0.5
5,536,078	+				-1.0
5,536,117	+				-0.1
5,536,117	+				+1.4
5,536,117	+				+1.4
5,536,118	-				-0.7
5,536,282	+				-2.3
5,536,282	+				-1.2
5,536,330	+		PFLU_RS24710	0.12	-3.3
5,536,423	+		PFLU_RS24710	0.18	-1.7
5,536,663	+		PFLU_RS24710	0.32	-2.8
5,536,717	+		PFLU_RS24710	0.36	-1.4
5,536,717	+		PFLU_RS24710	0.36	+0.0
5,536,832	+		PFLU_RS24710	0.43	-0.1
5,536,832	+		PFLU_RS24710	0.43	+0.2
5,536,833	-		PFLU_RS24710	0.43	-0.4
5,537,014	+		PFLU_RS24710	0.54	-2.8
5,537,014	+		PFLU_RS24710	0.54	-2.1
5,537,107	+		PFLU_RS24710	0.59	-0.4
5,537,107	+		PFLU_RS24710	0.59	+0.5
5,537,134	+		PFLU_RS24710	0.61	+0.4
5,537,134	+		PFLU_RS24710	0.61	-2.4
5,537,323	+		PFLU_RS24710	0.73	-0.1
5,537,323	+		PFLU_RS24710	0.73	+0.7
5,537,323	+		PFLU_RS24710	0.73	+0.4
5,537,323	+		PFLU_RS24710	0.73	+0.9
5,537,324	-		PFLU_RS24710	0.73	-2.1
5,537,324	-		PFLU_RS24710	0.73	-2.0
5,537,324	-		PFLU_RS24710	0.73	-0.1
5,537,324	-		PFLU_RS24710	0.73	-2.5
5,537,324	-		PFLU_RS24710	0.73	-1.0
5,537,324	-		PFLU_RS24710	0.73	-1.9
5,537,324	-		PFLU_RS24710	0.73	-1.2
5,537,344	+		PFLU_RS24710	0.74	+0.0
5,537,345	-		PFLU_RS24710	0.74	-1.9
5,537,404	+		PFLU_RS24710	0.77	-1.3
5,537,404	+		PFLU_RS24710	0.77	-0.8
5,537,404	+		PFLU_RS24710	0.77	-0.4
5,537,404	+		PFLU_RS24710	0.77	-1.0
5,537,404	+		PFLU_RS24710	0.77	-0.6
5,537,404	+		PFLU_RS24710	0.77	-0.4
5,537,404	+		PFLU_RS24710	0.77	-0.6
5,537,404	+		PFLU_RS24710	0.77	+0.6
5,537,404	+		PFLU_RS24710	0.77	-0.5
5,537,405	-		PFLU_RS24710	0.78	-2.1
5,537,405	-		PFLU_RS24710	0.78	-3.7
5,537,405	-		PFLU_RS24710	0.78	-2.2
5,537,405	-		PFLU_RS24710	0.78	-1.0
5,537,405	-		PFLU_RS24710	0.78	-2.3
5,537,405	-		PFLU_RS24710	0.78	-1.7
5,537,557	+		PFLU_RS24710	0.87	-1.2
5,537,557	+		PFLU_RS24710	0.87	+2.3
5,537,557	+		PFLU_RS24710	0.87	-1.5
5,537,558	-		PFLU_RS24710	0.87	-1.9
5,537,558	-		PFLU_RS24710	0.87	-1.7
5,537,575	+		PFLU_RS24710	0.88	-1.2
5,537,575	+		PFLU_RS24710	0.88	+0.4
5,537,575	+		PFLU_RS24710	0.88	+0.5
5,537,575	+		PFLU_RS24710	0.88	-0.9
5,537,576	-		PFLU_RS24710	0.88	-3.3
5,537,576	-		PFLU_RS24710	0.88	-2.6
5,537,576	-		PFLU_RS24710	0.88	-2.2
5,537,578	+		PFLU_RS24710	0.88	-0.2
5,537,578	+		PFLU_RS24710	0.88	-0.4
5,537,578	+		PFLU_RS24710	0.88	-2.7
5,537,578	+		PFLU_RS24710	0.88	+0.0
5,537,578	+		PFLU_RS24710	0.88	-0.7
5,537,579	-		PFLU_RS24710	0.88	-3.5
5,537,579	-		PFLU_RS24710	0.88	-1.9
5,537,579	-		PFLU_RS24710	0.88	+0.0
5,537,594	-		PFLU_RS24710	0.89	-1.4
5,537,665	+				-3.0
5,537,666	-				-0.4
5,537,666	-				-1.0
5,537,738	-				-2.5
5,537,746	+				+1.8
5,537,746	+				+0.9
5,537,746	+				+1.3
5,537,746	+				-0.1
5,537,747	-				-1.3
5,537,747	-				-1.0
5,537,889	+				+0.2
5,537,889	+				-2.4
5,537,906	+				+1.2
5,538,174	-		PFLU_RS24715	0.19	+1.0
5,538,230	+		PFLU_RS24715	0.23	+0.5
5,538,230	+		PFLU_RS24715	0.23	+0.6
5,538,230	+		PFLU_RS24715	0.23	-0.7
5,538,230	+		PFLU_RS24715	0.23	+0.5
5,538,230	+		PFLU_RS24715	0.23	+1.7
5,538,230	+		PFLU_RS24715	0.23	+1.5
5,538,231	-		PFLU_RS24715	0.23	+1.0
5,538,231	-		PFLU_RS24715	0.23	-0.7
5,538,231	-		PFLU_RS24715	0.23	+0.7
5,538,231	-		PFLU_RS24715	0.23	+3.3
5,538,231	-		PFLU_RS24715	0.23	+1.9
5,538,231	-		PFLU_RS24715	0.23	+2.1
5,538,231	-		PFLU_RS24715	0.23	+2.5
5,538,231	-		PFLU_RS24715	0.23	+1.0
5,538,231	-		PFLU_RS24715	0.23	+1.0
5,538,291	+		PFLU_RS24715	0.28	+0.2
5,538,292	-		PFLU_RS24715	0.28	+0.6
5,538,292	-		PFLU_RS24715	0.28	+2.0
5,538,292	-		PFLU_RS24715	0.28	+1.3
5,538,292	-		PFLU_RS24715	0.28	+0.9
5,538,292	-		PFLU_RS24715	0.28	+0.3
5,538,315	+		PFLU_RS24715	0.29	+1.1
5,538,315	+		PFLU_RS24715	0.29	+0.6
5,538,315	+		PFLU_RS24715	0.29	-0.2
5,538,315	+		PFLU_RS24715	0.29	+2.4
5,538,316	-		PFLU_RS24715	0.29	+0.9
5,538,316	-		PFLU_RS24715	0.29	+1.5
5,538,316	-		PFLU_RS24715	0.29	+1.0
5,538,316	-		PFLU_RS24715	0.29	+0.3
5,538,374	+		PFLU_RS24715	0.33	-0.7
5,538,374	+		PFLU_RS24715	0.33	+0.6
5,538,374	+		PFLU_RS24715	0.33	+1.3
5,538,375	-		PFLU_RS24715	0.33	-0.1
5,538,375	-		PFLU_RS24715	0.33	-0.4
5,538,375	-		PFLU_RS24715	0.33	-1.0
5,538,375	-		PFLU_RS24715	0.33	+2.0
5,538,562	+		PFLU_RS24715	0.46	+0.7
5,538,562	+		PFLU_RS24715	0.46	-0.8
5,538,590	+		PFLU_RS24715	0.48	-0.1
5,538,590	+		PFLU_RS24715	0.48	+1.2
5,538,590	+		PFLU_RS24715	0.48	+0.7
5,538,590	+		PFLU_RS24715	0.48	+0.0
5,538,590	+		PFLU_RS24715	0.48	+1.2
5,538,590	+		PFLU_RS24715	0.48	+1.6
5,538,590	+		PFLU_RS24715	0.48	+0.6
5,538,590	+		PFLU_RS24715	0.48	-0.5
5,538,590	+		PFLU_RS24715	0.48	+0.0
5,538,590	+		PFLU_RS24715	0.48	-0.2
5,538,590	+		PFLU_RS24715	0.48	-1.0
5,538,590	+		PFLU_RS24715	0.48	-0.7
5,538,590	+		PFLU_RS24715	0.48	-0.4
5,538,590	+		PFLU_RS24715	0.48	+0.8
5,538,590	+		PFLU_RS24715	0.48	+1.1
5,538,590	+		PFLU_RS24715	0.48	-0.5
5,538,590	+		PFLU_RS24715	0.48	-0.5
5,538,590	+		PFLU_RS24715	0.48	+0.0
5,538,590	+		PFLU_RS24715	0.48	-1.2
5,538,590	+		PFLU_RS24715	0.48	+1.3
5,538,591	-		PFLU_RS24715	0.48	-0.3
5,538,591	-		PFLU_RS24715	0.48	+1.0
5,538,591	-		PFLU_RS24715	0.48	-0.7
5,538,591	-		PFLU_RS24715	0.48	-2.6
5,538,591	-		PFLU_RS24715	0.48	+3.8
5,538,591	-		PFLU_RS24715	0.48	+0.5
5,538,591	-		PFLU_RS24715	0.48	+1.6
5,538,591	-		PFLU_RS24715	0.48	+0.5
5,538,591	-		PFLU_RS24715	0.48	+1.9
5,538,591	-		PFLU_RS24715	0.48	+0.8
5,538,591	-		PFLU_RS24715	0.48	-1.9
5,538,626	+		PFLU_RS24715	0.51	+0.7
5,538,627	-		PFLU_RS24715	0.51	-0.9
5,538,627	-		PFLU_RS24715	0.51	+0.7
5,538,660	+		PFLU_RS24715	0.53	-0.4
5,538,668	+		PFLU_RS24715	0.54	+1.6
5,538,668	+		PFLU_RS24715	0.54	+0.4
5,538,668	+		PFLU_RS24715	0.54	-0.3
5,538,668	+		PFLU_RS24715	0.54	-1.4
5,538,669	-		PFLU_RS24715	0.54	-0.4
5,538,669	-		PFLU_RS24715	0.54	-1.1
5,538,669	-		PFLU_RS24715	0.54	+1.2
5,538,710	+		PFLU_RS24715	0.57	+0.9
5,538,710	+		PFLU_RS24715	0.57	-1.5
5,538,711	-		PFLU_RS24715	0.57	-0.4
5,538,711	-		PFLU_RS24715	0.57	-1.0
5,538,711	-		PFLU_RS24715	0.57	+0.2