Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS23995

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
5,374,221	+		PFLU_RS23990	0.70	-1.8
5,374,221	+		PFLU_RS23990	0.70	-1.0
5,374,222	-		PFLU_RS23990	0.70	-0.5
5,374,222	-		PFLU_RS23990	0.70	-0.5
5,374,222	-		PFLU_RS23990	0.70	-1.4
5,374,238	+		PFLU_RS23990	0.71	-1.1
5,374,238	+		PFLU_RS23990	0.71	-0.3
5,374,238	+		PFLU_RS23990	0.71	-1.0
5,374,238	+		PFLU_RS23990	0.71	+1.9
5,374,238	+		PFLU_RS23990	0.71	-0.5
5,374,238	+		PFLU_RS23990	0.71	-0.3
5,374,296	+		PFLU_RS23990	0.75	+0.1
5,374,296	+		PFLU_RS23990	0.75	+0.3
5,374,296	+		PFLU_RS23990	0.75	-2.4
5,374,297	-		PFLU_RS23990	0.75	-0.4
5,374,297	-		PFLU_RS23990	0.75	+0.4
5,374,297	-		PFLU_RS23990	0.75	-0.1
5,374,356	-		PFLU_RS23990	0.79	+0.9
5,374,356	-		PFLU_RS23990	0.79	-0.5
5,374,360	-		PFLU_RS23990	0.79	-1.7
5,374,360	-		PFLU_RS23990	0.79	-1.7
5,374,360	-		PFLU_RS23990	0.79	+0.5
5,374,360	-		PFLU_RS23990	0.79	-1.9
5,374,569	+				-0.1
5,374,569	+				-0.6
5,374,570	-				-1.1
5,374,570	-				-1.1
5,374,578	+				-2.9
5,374,578	+				+3.3
5,374,578	+				+0.5
5,374,579	-				+1.9
5,374,650	+				+0.1
5,374,651	-				-0.6
5,374,651	-				-1.3
5,374,651	-				+0.5
5,374,690	+				-0.8
5,374,766	-				-1.3
5,374,766	-				-0.5
5,374,939	+				-0.3
5,374,939	+				-0.1
5,374,939	+				-0.1
5,374,939	+				-1.5
5,374,939	+				+1.0
5,374,940	-				+0.6
5,374,940	-				-0.3
5,374,940	-				-2.9
5,375,013	+				+0.6
5,375,061	-				+0.5
5,375,259	+		PFLU_RS23995	0.36	+0.9
5,375,316	+		PFLU_RS23995	0.51	-0.5
5,375,316	+		PFLU_RS23995	0.51	-0.8
5,375,316	+		PFLU_RS23995	0.51	-1.7
5,375,316	+		PFLU_RS23995	0.51	+1.0
5,375,316	+		PFLU_RS23995	0.51	-0.4
5,375,316	+		PFLU_RS23995	0.51	-0.3
5,375,316	+		PFLU_RS23995	0.51	+1.3
5,375,316	+		PFLU_RS23995	0.51	+0.6
5,375,316	+		PFLU_RS23995	0.51	+0.1
5,375,316	+		PFLU_RS23995	0.51	+0.5
5,375,316	+		PFLU_RS23995	0.51	-0.1
5,375,316	+		PFLU_RS23995	0.51	-0.6
5,375,316	+		PFLU_RS23995	0.51	-0.8
5,375,316	+		PFLU_RS23995	0.51	-0.8
5,375,316	+		PFLU_RS23995	0.51	+0.5
5,375,316	+		PFLU_RS23995	0.51	+0.5
5,375,317	-		PFLU_RS23995	0.51	-3.1
5,375,317	-		PFLU_RS23995	0.51	-1.2
5,375,317	-		PFLU_RS23995	0.51	-1.0
5,375,317	-		PFLU_RS23995	0.51	+0.8
5,375,317	-		PFLU_RS23995	0.51	-1.1
5,375,317	-		PFLU_RS23995	0.51	+0.8
5,375,317	-		PFLU_RS23995	0.51	-1.6
5,375,317	-		PFLU_RS23995	0.51	-1.3
5,375,317	-		PFLU_RS23995	0.51	-0.5
5,375,317	-		PFLU_RS23995	0.51	-1.6
5,375,317	-		PFLU_RS23995	0.51	-0.5
5,375,317	-		PFLU_RS23995	0.51	+0.0
5,375,317	-		PFLU_RS23995	0.51	-0.1
5,375,317	-		PFLU_RS23995	0.51	-2.3
5,375,317	-		PFLU_RS23995	0.51	-2.1
5,375,317	-		PFLU_RS23995	0.51	+1.5
5,375,317	-		PFLU_RS23995	0.51	+1.4
5,375,317	-		PFLU_RS23995	0.51	-1.1
5,375,317	-		PFLU_RS23995	0.51	-1.9
5,375,317	-		PFLU_RS23995	0.51	-1.6
5,375,317	-		PFLU_RS23995	0.51	+1.4
5,375,317	-		PFLU_RS23995	0.51	-0.3
5,375,317	-		PFLU_RS23995	0.51	+0.1
5,375,317	-		PFLU_RS23995	0.51	+0.6
5,375,317	-		PFLU_RS23995	0.51	+1.5
5,375,317	-		PFLU_RS23995	0.51	+0.5
5,375,317	-		PFLU_RS23995	0.51	-1.0
5,375,447	+		PFLU_RS23995	0.85	-0.1
5,375,469	+				+0.8
5,375,469	+				-0.9
5,375,470	-				+0.9
5,375,470	-				+0.9
5,375,523	+				-1.6
5,375,533	-				-0.6
5,375,755	+				-3.5
5,375,755	+				-0.6
5,375,755	+				-2.4
5,375,755	+				-3.0
5,375,755	+				-0.7
5,375,755	+				-2.3
5,375,756	-				-0.5
5,375,756	-				-1.8
5,375,756	-				+0.0
5,375,756	-				-1.1
5,375,756	-				-1.9
5,375,756	-				-2.3
5,375,756	-				-1.6
5,375,756	-				-1.9
5,375,756	-				-0.6
5,375,770	+				-1.8
5,375,770	+				+0.5
5,375,770	+				-2.5
5,375,770	+				+1.1
5,375,770	+				-1.3
5,375,771	-				-1.2
5,375,771	-				-1.9
5,375,771	-				-1.4
5,375,771	-				-1.1
5,375,773	+				+2.1
5,375,773	+				-2.1
5,375,773	+				-0.3
5,375,773	+				-2.0
5,375,773	+				-2.7
5,375,773	+				+0.5
5,375,773	+				-0.4
5,375,773	+				-0.3
5,375,773	+				-2.2
5,375,774	-				-1.1
5,375,774	-				-0.1
5,375,774	-				-0.9
5,375,774	-				-0.7
5,375,774	-				-2.4
5,375,774	-				-0.3
5,375,774	-				-0.3
5,375,774	-				-0.9
5,375,774	-				-2.9
5,375,774	-				+1.1
5,375,796	+				-0.2
5,375,830	+		PFLU_RS24000	0.11	-1.8
5,375,839	+		PFLU_RS24000	0.11	+0.3
5,375,839	+		PFLU_RS24000	0.11	-1.9
5,375,839	+		PFLU_RS24000	0.11	-2.1
5,375,839	+		PFLU_RS24000	0.11	-1.7
5,375,839	+		PFLU_RS24000	0.11	-2.2
5,375,840	-		PFLU_RS24000	0.11	+1.9
5,375,840	-		PFLU_RS24000	0.11	-1.1
5,375,849	-		PFLU_RS24000	0.12	-2.3
5,376,090	+		PFLU_RS24000	0.20	+0.8
5,376,160	+		PFLU_RS24000	0.23	-0.6
5,376,361	+		PFLU_RS24000	0.30	-1.0
5,376,361	+		PFLU_RS24000	0.30	-0.9
5,376,361	+		PFLU_RS24000	0.30	-2.6
5,376,361	+		PFLU_RS24000	0.30	-2.9
5,376,362	-		PFLU_RS24000	0.30	-1.3
5,376,362	-		PFLU_RS24000	0.30	+0.5
5,376,477	+		PFLU_RS24000	0.34	-1.0
5,376,477	+		PFLU_RS24000	0.34	+0.5
5,376,477	+		PFLU_RS24000	0.34	-2.2
5,376,477	+		PFLU_RS24000	0.34	-0.8
5,376,477	+		PFLU_RS24000	0.34	-0.5
5,376,478	-		PFLU_RS24000	0.34	+0.3
5,376,478	-		PFLU_RS24000	0.34	-1.0
5,376,478	-		PFLU_RS24000	0.34	-0.2
5,376,478	-		PFLU_RS24000	0.34	-2.5
5,376,478	-		PFLU_RS24000	0.34	-0.3
5,376,478	-		PFLU_RS24000	0.34	-3.1
5,376,478	-		PFLU_RS24000	0.34	-1.8
5,376,478	-		PFLU_RS24000	0.34	-0.8