Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13165

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
2,974,939	+		PFLU_RS13160	0.27	+0.9
2,974,939	+		PFLU_RS13160	0.27	+1.3
2,974,939	+		PFLU_RS13160	0.27	+0.9
2,974,940	-		PFLU_RS13160	0.28	+0.7
2,974,940	-		PFLU_RS13160	0.28	+0.8
2,974,940	-		PFLU_RS13160	0.28	-0.9
2,974,940	-		PFLU_RS13160	0.28	-3.4
2,974,940	-		PFLU_RS13160	0.28	+1.2
2,974,989	+		PFLU_RS13160	0.31	+1.3
2,974,990	-		PFLU_RS13160	0.31	-0.7
2,974,990	-		PFLU_RS13160	0.31	+0.5
2,975,000	+		PFLU_RS13160	0.32	+2.3
2,975,000	+		PFLU_RS13160	0.32	+0.4
2,975,001	-		PFLU_RS13160	0.32	+0.9
2,975,024	+		PFLU_RS13160	0.34	-0.0
2,975,044	+		PFLU_RS13160	0.35	+0.5
2,975,044	+		PFLU_RS13160	0.35	+1.3
2,975,044	+		PFLU_RS13160	0.35	+0.9
2,975,044	+		PFLU_RS13160	0.35	-0.9
2,975,044	+		PFLU_RS13160	0.35	+0.7
2,975,044	+		PFLU_RS13160	0.35	+2.5
2,975,044	+		PFLU_RS13160	0.35	+2.3
2,975,045	-		PFLU_RS13160	0.36	+1.3
2,975,045	-		PFLU_RS13160	0.36	-1.1
2,975,045	-		PFLU_RS13160	0.36	+1.5
2,975,045	-		PFLU_RS13160	0.36	+0.1
2,975,045	-		PFLU_RS13160	0.36	+0.7
2,975,045	-		PFLU_RS13160	0.36	-2.6
2,975,045	-		PFLU_RS13160	0.36	+1.1
2,975,168	-		PFLU_RS13160	0.45	-1.3
2,975,263	+		PFLU_RS13160	0.52	+0.3
2,975,264	-		PFLU_RS13160	0.52	-0.9
2,975,264	-		PFLU_RS13160	0.52	+0.4
2,975,278	+		PFLU_RS13160	0.53	+1.0
2,975,279	-		PFLU_RS13160	0.53	+1.7
2,975,279	-		PFLU_RS13160	0.53	-0.6
2,975,289	+		PFLU_RS13160	0.54	+1.9
2,975,290	-		PFLU_RS13160	0.54	+1.3
2,975,326	+		PFLU_RS13160	0.57	-0.7
2,975,326	+		PFLU_RS13160	0.57	-1.3
2,975,327	-		PFLU_RS13160	0.57	+2.5
2,975,327	-		PFLU_RS13160	0.57	+0.6
2,975,381	+		PFLU_RS13160	0.61	+0.1
2,975,382	-		PFLU_RS13160	0.61	+1.1
2,975,421	-		PFLU_RS13160	0.64	+0.6
2,975,452	+		PFLU_RS13160	0.67	-0.5
2,975,452	+		PFLU_RS13160	0.67	-0.5
2,975,452	+		PFLU_RS13160	0.67	+0.7
2,975,452	+		PFLU_RS13160	0.67	+0.9
2,975,452	+		PFLU_RS13160	0.67	-2.7
2,975,452	+		PFLU_RS13160	0.67	-0.1
2,975,453	-		PFLU_RS13160	0.67	-0.1
2,975,453	-		PFLU_RS13160	0.67	-0.7
2,975,453	-		PFLU_RS13160	0.67	+0.7
2,975,510	+		PFLU_RS13160	0.71	+0.7
2,975,512	+		PFLU_RS13160	0.71	+1.0
2,975,512	+		PFLU_RS13160	0.71	+1.0
2,975,512	+		PFLU_RS13160	0.71	-0.5
2,975,513	-		PFLU_RS13160	0.71	+1.2
2,975,513	-		PFLU_RS13160	0.71	+0.3
2,975,513	-		PFLU_RS13160	0.71	+0.4
2,975,513	-		PFLU_RS13160	0.71	+0.5
2,975,513	-		PFLU_RS13160	0.71	+1.5
2,975,519	+		PFLU_RS13160	0.72	+0.9
2,975,567	-		PFLU_RS13160	0.76	-0.7
2,975,567	-		PFLU_RS13160	0.76	+2.7
2,975,567	-		PFLU_RS13160	0.76	+0.7
2,975,567	-		PFLU_RS13160	0.76	-0.2
2,975,712	+		PFLU_RS13160	0.87	-0.2
2,975,818	+				+0.3
2,975,818	+				-0.3
2,975,818	+				-2.1
2,975,818	+				+0.7
2,975,818	+				-0.5
2,975,818	+				-1.1
2,975,818	+				+0.7
2,975,819	-				+0.4
2,975,819	-				-0.9
2,975,819	-				+0.7
2,975,819	-				-1.0
2,975,819	-				+0.7
2,975,819	-				+1.2
2,975,843	+				+1.0
2,975,843	+				-1.5
2,975,843	+				+0.3
2,975,843	+				+0.3
2,975,843	+				-0.1
2,975,843	+				+0.4
2,975,843	+				+0.9
2,975,844	-				-0.0
2,975,844	-				+0.3
2,975,847	+				-0.1
2,975,848	-				-1.2
2,975,848	-				-1.6
2,975,848	-				-0.6
2,975,848	-				+0.7
2,975,848	-				-0.8
2,975,865	+				+2.7
2,975,865	+				-0.1
2,975,866	-				-0.0
2,975,890	+				+1.7
2,975,890	+				-0.7
2,975,931	+				-0.0
2,975,931	+				+1.2
2,975,931	+				-0.5
2,975,931	+				-3.4
2,975,931	+				+1.1
2,975,931	+				-2.1
2,975,931	+				+1.2
2,975,931	+				-0.2
2,975,931	+				+1.1
2,975,931	+				-0.5
2,975,932	-				-0.5
2,975,932	-				-3.1
2,975,932	-				-0.5
2,975,932	-				+0.3
2,975,932	-				-1.6
2,975,932	-				+1.4
2,975,932	-				-0.5
2,975,932	-				+0.1
2,975,932	-				+1.2
2,975,953	+				+2.5
2,975,953	+				+2.8
2,975,953	+				+0.7
2,975,954	-				-0.0
2,975,961	+				+0.6
2,975,961	+				+0.7
2,975,961	+				+1.1
2,975,961	+				-0.7
2,975,962	-				-0.3
2,975,962	-				-1.0
2,975,962	-				+0.5
2,976,016	+		PFLU_RS13165	0.11	+0.1
2,976,017	-		PFLU_RS13165	0.11	+1.3
2,976,054	+		PFLU_RS13165	0.16	+0.0
2,976,054	+		PFLU_RS13165	0.16	-0.2
2,976,055	-		PFLU_RS13165	0.16	-0.3
2,976,055	-		PFLU_RS13165	0.16	+1.3
2,976,111	+		PFLU_RS13165	0.24	-0.9
2,976,112	-		PFLU_RS13165	0.24	-2.7
2,976,112	-		PFLU_RS13165	0.24	-0.0
2,976,112	-		PFLU_RS13165	0.24	+0.4
2,976,124	-		PFLU_RS13165	0.25	+0.4
2,976,169	+		PFLU_RS13165	0.31	+0.2
2,976,243	+		PFLU_RS13165	0.41	+1.5
2,976,243	+		PFLU_RS13165	0.41	-1.2
2,976,243	+		PFLU_RS13165	0.41	+0.3
2,976,243	+		PFLU_RS13165	0.41	-0.8
2,976,243	+		PFLU_RS13165	0.41	+0.1
2,976,243	+		PFLU_RS13165	0.41	-1.0
2,976,244	-		PFLU_RS13165	0.41	-0.3
2,976,293	+		PFLU_RS13165	0.48	+1.2
2,976,388	-		PFLU_RS13165	0.61	+1.6
2,976,399	+		PFLU_RS13165	0.62	+1.3
2,976,399	+		PFLU_RS13165	0.62	-0.5
2,976,399	+		PFLU_RS13165	0.62	+0.7
2,976,399	+		PFLU_RS13165	0.62	+0.4
2,976,400	-		PFLU_RS13165	0.62	+1.5
2,976,400	-		PFLU_RS13165	0.62	+1.6
2,976,400	-		PFLU_RS13165	0.62	+0.1
2,976,400	-		PFLU_RS13165	0.62	+2.8
2,976,431	+		PFLU_RS13165	0.66	-0.3
2,976,431	+		PFLU_RS13165	0.66	-0.0
2,976,432	-		PFLU_RS13165	0.67	-0.4
2,976,432	-		PFLU_RS13165	0.67	-1.9
2,976,432	-		PFLU_RS13165	0.67	+1.0
2,976,432	-		PFLU_RS13165	0.67	-0.3
2,976,444	+		PFLU_RS13165	0.68	+1.9
2,976,560	+		PFLU_RS13165	0.84	+0.4
2,976,560	+		PFLU_RS13165	0.84	+0.9
2,976,560	+		PFLU_RS13165	0.84	+1.2
2,976,560	+		PFLU_RS13165	0.84	-0.0
2,976,560	+		PFLU_RS13165	0.84	-0.0
2,976,626	+				+0.9
2,976,626	+				-0.3
2,976,627	-				-1.9
2,976,627	-				-0.0
2,976,627	-				-0.4
2,976,627	-				-0.4
2,976,627	-				-2.6
2,976,627	-				+1.6
2,976,710	-				+0.5
2,976,710	-				+1.8
2,976,722	+				+0.3
2,976,723	-				-0.3
2,976,723	-				-1.2
2,976,723	-				-2.0
2,976,848	+		PFLU_RS13170	0.19	+1.4
2,976,849	-		PFLU_RS13170	0.19	+1.3
2,976,849	-		PFLU_RS13170	0.19	-0.0
2,976,944	+		PFLU_RS13170	0.33	-0.9
2,976,944	+		PFLU_RS13170	0.33	+0.6
2,976,944	+		PFLU_RS13170	0.33	-2.3
2,976,944	+		PFLU_RS13170	0.33	-0.0
2,976,945	-		PFLU_RS13170	0.33	+2.2
2,976,945	-		PFLU_RS13170	0.33	-1.9
2,976,945	-		PFLU_RS13170	0.33	-1.6
2,976,945	-		PFLU_RS13170	0.33	+0.3
2,976,945	-		PFLU_RS13170	0.33	-2.3
2,976,945	-		PFLU_RS13170	0.33	+0.9
2,976,990	-		PFLU_RS13170	0.40	+0.9
2,976,990	-		PFLU_RS13170	0.40	-1.5
2,977,058	+		PFLU_RS13170	0.49	+0.7
2,977,058	+		PFLU_RS13170	0.49	+0.1
2,977,059	-		PFLU_RS13170	0.50	+1.7
2,977,091	+		PFLU_RS13170	0.54	+1.1
2,977,092	-		PFLU_RS13170	0.54	+1.0
2,977,129	+		PFLU_RS13170	0.60	-0.6
2,977,130	-		PFLU_RS13170	0.60	+1.1
2,977,183	+		PFLU_RS13170	0.68	-0.1
2,977,183	+		PFLU_RS13170	0.68	+0.4
2,977,184	-		PFLU_RS13170	0.68	+0.6
2,977,184	-		PFLU_RS13170	0.68	+1.6
2,977,184	-		PFLU_RS13170	0.68	+0.7
2,977,196	+		PFLU_RS13170	0.70	+0.5
2,977,197	-		PFLU_RS13170	0.70	+1.4
2,977,287	+		PFLU_RS13170	0.83	-0.9
2,977,287	+		PFLU_RS13170	0.83	+0.2
2,977,304	+		PFLU_RS13170	0.86	-1.0
2,977,304	+		PFLU_RS13170	0.86	-0.1
2,977,304	+		PFLU_RS13170	0.86	-0.6
2,977,304	+		PFLU_RS13170	0.86	-0.0
2,977,305	-		PFLU_RS13170	0.86	-1.9
2,977,305	-		PFLU_RS13170	0.86	-2.3
2,977,356	+				-1.1
2,977,356	+				-0.7
2,977,356	+				-1.0
2,977,357	-				-0.5
2,977,357	-				+0.4
2,977,357	-				+0.1
2,977,357	-				-0.6
2,977,357	-				+1.1
2,977,421	+				+1.0
2,977,421	+				+0.8
2,977,427	+				+0.1
2,977,427	+				-0.9
2,977,427	+				-1.0
2,977,427	+				-0.9
2,977,428	-				-0.0
2,977,428	-				+0.9
2,977,429	+				+0.5
2,977,628	+		PFLU_RS13175	0.20	+1.3
2,977,628	+		PFLU_RS13175	0.20	+1.5
2,977,628	+		PFLU_RS13175	0.20	+1.2
2,977,628	+		PFLU_RS13175	0.20	+0.4
2,977,629	-		PFLU_RS13175	0.20	-1.3
2,977,629	-		PFLU_RS13175	0.20	+1.1
2,977,629	-		PFLU_RS13175	0.20	+1.5
2,977,629	-		PFLU_RS13175	0.20	-0.3
2,977,629	-		PFLU_RS13175	0.20	-0.8
2,977,629	-		PFLU_RS13175	0.20	-0.3
2,977,629	-		PFLU_RS13175	0.20	-0.9
2,977,629	-		PFLU_RS13175	0.20	-0.4
2,977,629	-		PFLU_RS13175	0.20	-0.9
2,977,629	-		PFLU_RS13175	0.20	+0.1
2,977,679	+		PFLU_RS13175	0.27	+0.3
2,977,679	+		PFLU_RS13175	0.27	+1.5
2,977,679	+		PFLU_RS13175	0.27	+0.4
2,977,679	+		PFLU_RS13175	0.27	+0.1
2,977,679	+		PFLU_RS13175	0.27	-0.9
2,977,679	+		PFLU_RS13175	0.27	-2.6
2,977,680	-		PFLU_RS13175	0.27	+0.1
2,977,680	-		PFLU_RS13175	0.27	+0.5
2,977,680	-		PFLU_RS13175	0.27	-0.3
2,977,680	-		PFLU_RS13175	0.27	-2.3
2,977,680	-		PFLU_RS13175	0.27	+0.6