Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS04390

Experiment: NAG (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS04380 and PFLU_RS04385 are separated by 16 nucleotidesPFLU_RS04385 and PFLU_RS04390 are separated by 2 nucleotidesPFLU_RS04390 and PFLU_RS04395 are separated by 10 nucleotidesPFLU_RS04395 and PFLU_RS04400 are separated by 147 nucleotides PFLU_RS04380: PFLU_RS04380 - HPr family phosphocarrier protein, at 989,266 to 989,538 _RS04380 PFLU_RS04385: PFLU_RS04385 - RNase adapter RapZ, at 989,555 to 990,412 _RS04385 PFLU_RS04390: PFLU_RS04390 - PTS IIA-like nitrogen regulatory protein PtsN, at 990,415 to 990,879 _RS04390 PFLU_RS04395: PFLU_RS04395 - ribosome-associated translation inhibitor RaiA, at 990,890 to 991,195 _RS04395 PFLU_RS04400: PFLU_RS04400 - RNA polymerase factor sigma-54, at 991,343 to 992,836 _RS04400 Position (kb) 990 991Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 989.631 kb on + strandat 989.631 kb on + strandat 989.631 kb on + strandat 989.632 kb on - strandat 989.632 kb on - strandat 989.679 kb on + strand, within PFLU_RS04385at 989.679 kb on + strand, within PFLU_RS04385at 989.679 kb on + strand, within PFLU_RS04385at 989.679 kb on + strand, within PFLU_RS04385at 989.679 kb on + strand, within PFLU_RS04385at 989.679 kb on + strand, within PFLU_RS04385at 989.679 kb on + strand, within PFLU_RS04385at 989.679 kb on + strand, within PFLU_RS04385at 989.679 kb on + strand, within PFLU_RS04385at 989.679 kb on + strand, within PFLU_RS04385at 989.679 kb on + strand, within PFLU_RS04385at 989.679 kb on + strand, within PFLU_RS04385at 989.679 kb on + strand, within PFLU_RS04385at 989.680 kb on - strand, within PFLU_RS04385at 989.680 kb on - strand, within PFLU_RS04385at 989.680 kb on - strand, within PFLU_RS04385at 989.680 kb on - strand, within PFLU_RS04385at 989.680 kb on - strand, within PFLU_RS04385at 989.680 kb on - strand, within PFLU_RS04385at 989.680 kb on - strand, within PFLU_RS04385at 989.680 kb on - strand, within PFLU_RS04385at 989.724 kb on + strand, within PFLU_RS04385at 989.724 kb on + strand, within PFLU_RS04385at 989.724 kb on + strand, within PFLU_RS04385at 989.724 kb on + strand, within PFLU_RS04385at 989.724 kb on + strand, within PFLU_RS04385at 989.724 kb on + strand, within PFLU_RS04385at 989.724 kb on + strand, within PFLU_RS04385at 989.724 kb on + strand, within PFLU_RS04385at 989.724 kb on + strand, within PFLU_RS04385at 989.724 kb on + strand, within PFLU_RS04385at 989.725 kb on - strand, within PFLU_RS04385at 989.725 kb on - strand, within PFLU_RS04385at 989.725 kb on - strand, within PFLU_RS04385at 989.725 kb on - strand, within PFLU_RS04385at 989.776 kb on - strand, within PFLU_RS04385at 989.776 kb on - strand, within PFLU_RS04385at 989.829 kb on + strand, within PFLU_RS04385at 989.830 kb on - strand, within PFLU_RS04385at 989.830 kb on - strand, within PFLU_RS04385at 989.830 kb on - strand, within PFLU_RS04385at 989.858 kb on + strand, within PFLU_RS04385at 989.858 kb on + strand, within PFLU_RS04385at 989.859 kb on - strand, within PFLU_RS04385at 989.859 kb on - strand, within PFLU_RS04385at 989.890 kb on + strand, within PFLU_RS04385at 989.890 kb on + strand, within PFLU_RS04385at 989.891 kb on - strand, within PFLU_RS04385at 989.973 kb on + strand, within PFLU_RS04385at 989.974 kb on - strand, within PFLU_RS04385at 989.974 kb on - strand, within PFLU_RS04385at 989.974 kb on - strand, within PFLU_RS04385at 989.980 kb on + strand, within PFLU_RS04385at 989.981 kb on - strand, within PFLU_RS04385at 989.981 kb on - strand, within PFLU_RS04385at 990.147 kb on + strand, within PFLU_RS04385at 990.147 kb on + strand, within PFLU_RS04385at 990.148 kb on - strand, within PFLU_RS04385at 990.148 kb on - strand, within PFLU_RS04385at 990.148 kb on - strand, within PFLU_RS04385at 990.333 kb on + strandat 990.333 kb on + strandat 990.333 kb on + strandat 990.333 kb on + strandat 990.334 kb on - strandat 990.367 kb on + strandat 990.367 kb on + strandat 990.368 kb on - strandat 990.374 kb on - strandat 990.416 kb on + strandat 990.417 kb on - strandat 990.902 kb on - strandat 990.902 kb on - strandat 990.902 kb on - strandat 990.902 kb on - strandat 990.902 kb on - strandat 990.902 kb on - strandat 990.902 kb on - strandat 990.932 kb on - strand, within PFLU_RS04395at 990.932 kb on - strand, within PFLU_RS04395at 990.939 kb on - strand, within PFLU_RS04395at 990.939 kb on - strand, within PFLU_RS04395at 990.939 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 990.985 kb on - strand, within PFLU_RS04395at 991.141 kb on - strand, within PFLU_RS04395at 991.141 kb on - strand, within PFLU_RS04395at 991.141 kb on - strand, within PFLU_RS04395at 991.141 kb on - strand, within PFLU_RS04395at 991.160 kb on - strand, within PFLU_RS04395at 991.160 kb on - strand, within PFLU_RS04395at 991.196 kb on - strandat 991.196 kb on - strandat 991.196 kb on - strandat 991.196 kb on - strandat 991.196 kb on - strandat 991.196 kb on - strandat 991.235 kb on - strandat 991.241 kb on - strandat 991.358 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C); with MOPS
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989,631 + -4.4
989,631 + -2.1
989,631 + -2.7
989,632 - -3.0
989,632 - -2.6
989,679 + PFLU_RS04385 0.14 -0.3
989,679 + PFLU_RS04385 0.14 -2.8
989,679 + PFLU_RS04385 0.14 -0.3
989,679 + PFLU_RS04385 0.14 -3.2
989,679 + PFLU_RS04385 0.14 -2.1
989,679 + PFLU_RS04385 0.14 -1.3
989,679 + PFLU_RS04385 0.14 -2.1
989,679 + PFLU_RS04385 0.14 -3.4
989,679 + PFLU_RS04385 0.14 -2.8
989,679 + PFLU_RS04385 0.14 -3.9
989,679 + PFLU_RS04385 0.14 -3.9
989,679 + PFLU_RS04385 0.14 -3.2
989,679 + PFLU_RS04385 0.14 +0.1
989,680 - PFLU_RS04385 0.15 +0.1
989,680 - PFLU_RS04385 0.15 +0.1
989,680 - PFLU_RS04385 0.15 -3.5
989,680 - PFLU_RS04385 0.15 -2.3
989,680 - PFLU_RS04385 0.15 -2.8
989,680 - PFLU_RS04385 0.15 -3.8
989,680 - PFLU_RS04385 0.15 -2.2
989,680 - PFLU_RS04385 0.15 -3.5
989,724 + PFLU_RS04385 0.20 -2.1
989,724 + PFLU_RS04385 0.20 +0.7
989,724 + PFLU_RS04385 0.20 -3.0
989,724 + PFLU_RS04385 0.20 -0.6
989,724 + PFLU_RS04385 0.20 -3.4
989,724 + PFLU_RS04385 0.20 -2.6
989,724 + PFLU_RS04385 0.20 -0.6
989,724 + PFLU_RS04385 0.20 -4.5
989,724 + PFLU_RS04385 0.20 -3.8
989,724 + PFLU_RS04385 0.20 -3.3
989,725 - PFLU_RS04385 0.20 -1.8
989,725 - PFLU_RS04385 0.20 -2.7
989,725 - PFLU_RS04385 0.20 +0.7
989,725 - PFLU_RS04385 0.20 -3.0
989,776 - PFLU_RS04385 0.26 -2.8
989,776 - PFLU_RS04385 0.26 -3.4
989,829 + PFLU_RS04385 0.32 -3.0
989,830 - PFLU_RS04385 0.32 -2.1
989,830 - PFLU_RS04385 0.32 -3.1
989,830 - PFLU_RS04385 0.32 -2.2
989,858 + PFLU_RS04385 0.35 -1.3
989,858 + PFLU_RS04385 0.35 -3.3
989,859 - PFLU_RS04385 0.35 -3.6
989,859 - PFLU_RS04385 0.35 -2.7
989,890 + PFLU_RS04385 0.39 -3.7
989,890 + PFLU_RS04385 0.39 -3.6
989,891 - PFLU_RS04385 0.39 -3.7
989,973 + PFLU_RS04385 0.49 -2.7
989,974 - PFLU_RS04385 0.49 -2.3
989,974 - PFLU_RS04385 0.49 -1.1
989,974 - PFLU_RS04385 0.49 -1.9
989,980 + PFLU_RS04385 0.50 -2.2
989,981 - PFLU_RS04385 0.50 -3.0
989,981 - PFLU_RS04385 0.50 -3.5
990,147 + PFLU_RS04385 0.69 -3.1
990,147 + PFLU_RS04385 0.69 -1.9
990,148 - PFLU_RS04385 0.69 -1.6
990,148 - PFLU_RS04385 0.69 -3.9
990,148 - PFLU_RS04385 0.69 -1.8
990,333 + -0.6
990,333 + -2.0
990,333 + -1.6
990,333 + -1.1
990,334 - +0.1
990,367 + -2.8
990,367 + +0.1
990,368 - -4.4
990,374 - -3.1
990,416 + -1.3
990,417 - +0.5
990,902 - -0.9
990,902 - +0.1
990,902 - +0.7
990,902 - +0.5
990,902 - -0.3
990,902 - +1.1
990,902 - +0.7
990,932 - PFLU_RS04395 0.14 +0.9
990,932 - PFLU_RS04395 0.14 +0.7
990,939 - PFLU_RS04395 0.16 +0.5
990,939 - PFLU_RS04395 0.16 +1.5
990,939 - PFLU_RS04395 0.16 +1.1
990,985 - PFLU_RS04395 0.31 +0.2
990,985 - PFLU_RS04395 0.31 -1.6
990,985 - PFLU_RS04395 0.31 -1.1
990,985 - PFLU_RS04395 0.31 -1.5
990,985 - PFLU_RS04395 0.31 +1.7
990,985 - PFLU_RS04395 0.31 +0.6
990,985 - PFLU_RS04395 0.31 -0.2
990,985 - PFLU_RS04395 0.31 +1.4
990,985 - PFLU_RS04395 0.31 +1.3
990,985 - PFLU_RS04395 0.31 +1.0
990,985 - PFLU_RS04395 0.31 -0.3
990,985 - PFLU_RS04395 0.31 -0.4
990,985 - PFLU_RS04395 0.31 -1.4
990,985 - PFLU_RS04395 0.31 +0.7
990,985 - PFLU_RS04395 0.31 -2.3
991,141 - PFLU_RS04395 0.82 +0.3
991,141 - PFLU_RS04395 0.82 +2.4
991,141 - PFLU_RS04395 0.82 -1.5
991,141 - PFLU_RS04395 0.82 +0.7
991,160 - PFLU_RS04395 0.88 +2.1
991,160 - PFLU_RS04395 0.88 -0.6
991,196 - +0.7
991,196 - +1.4
991,196 - -0.0
991,196 - +0.7
991,196 - +0.7
991,196 - -1.8
991,235 - +0.7
991,241 - -1.6
991,358 - +1.4

Or see this region's nucleotide sequence