Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS04015

Experiment: NAG (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS04010 and PFLU_RS04015 are separated by 0 nucleotidesPFLU_RS04015 and PFLU_RS04020 are separated by 11 nucleotides PFLU_RS04010: PFLU_RS04010 - phosphoenolpyruvate--protein phosphotransferase, at 905,079 to 907,937 _RS04010 PFLU_RS04015: PFLU_RS04015 - 1-phosphofructokinase, at 907,938 to 908,858 _RS04015 PFLU_RS04020: PFLU_RS04020 - PTS fructose-like transporter subunit IIB, at 908,870 to 910,582 _RS04020 Position (kb) 907 908 909Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 907.197 kb on + strand, within PFLU_RS04010at 907.198 kb on - strand, within PFLU_RS04010at 907.198 kb on - strand, within PFLU_RS04010at 907.210 kb on + strand, within PFLU_RS04010at 907.210 kb on + strand, within PFLU_RS04010at 907.210 kb on + strand, within PFLU_RS04010at 907.210 kb on + strand, within PFLU_RS04010at 907.210 kb on + strand, within PFLU_RS04010at 907.210 kb on + strand, within PFLU_RS04010at 907.211 kb on - strand, within PFLU_RS04010at 907.211 kb on - strand, within PFLU_RS04010at 907.211 kb on - strand, within PFLU_RS04010at 907.211 kb on - strand, within PFLU_RS04010at 907.211 kb on - strand, within PFLU_RS04010at 907.211 kb on - strand, within PFLU_RS04010at 907.605 kb on + strand, within PFLU_RS04010at 907.605 kb on + strand, within PFLU_RS04010at 907.606 kb on - strand, within PFLU_RS04010at 907.606 kb on - strand, within PFLU_RS04010at 907.922 kb on - strandat 907.935 kb on + strandat 907.935 kb on + strandat 907.935 kb on + strandat 907.935 kb on + strandat 907.935 kb on + strandat 907.935 kb on + strandat 907.936 kb on - strandat 907.936 kb on - strandat 908.213 kb on + strand, within PFLU_RS04015at 908.213 kb on + strand, within PFLU_RS04015at 908.214 kb on - strand, within PFLU_RS04015at 908.214 kb on - strand, within PFLU_RS04015at 908.607 kb on + strand, within PFLU_RS04015at 908.607 kb on + strand, within PFLU_RS04015at 908.607 kb on + strand, within PFLU_RS04015at 908.608 kb on - strand, within PFLU_RS04015at 908.642 kb on + strand, within PFLU_RS04015at 908.856 kb on + strandat 908.856 kb on + strandat 908.856 kb on + strandat 908.856 kb on + strandat 908.856 kb on + strandat 908.856 kb on + strandat 908.856 kb on + strandat 908.856 kb on + strandat 908.856 kb on + strandat 908.857 kb on - strandat 908.857 kb on - strandat 908.857 kb on - strandat 908.857 kb on - strandat 908.857 kb on - strandat 908.857 kb on - strandat 908.857 kb on - strandat 908.857 kb on - strandat 908.857 kb on - strandat 908.857 kb on - strandat 908.857 kb on - strandat 908.857 kb on - strandat 908.877 kb on + strandat 908.877 kb on + strandat 908.878 kb on - strandat 908.888 kb on - strandat 908.968 kb on + strandat 908.969 kb on - strandat 908.969 kb on - strandat 909.073 kb on + strand, within PFLU_RS04020at 909.073 kb on + strand, within PFLU_RS04020at 909.074 kb on - strand, within PFLU_RS04020at 909.074 kb on - strand, within PFLU_RS04020at 909.144 kb on + strand, within PFLU_RS04020at 909.145 kb on - strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.176 kb on + strand, within PFLU_RS04020at 909.177 kb on - strand, within PFLU_RS04020at 909.177 kb on - strand, within PFLU_RS04020at 909.177 kb on - strand, within PFLU_RS04020at 909.177 kb on - strand, within PFLU_RS04020at 909.177 kb on - strand, within PFLU_RS04020at 909.177 kb on - strand, within PFLU_RS04020at 909.177 kb on - strand, within PFLU_RS04020at 909.177 kb on - strand, within PFLU_RS04020at 909.177 kb on - strand, within PFLU_RS04020at 909.177 kb on - strand, within PFLU_RS04020at 909.177 kb on - strand, within PFLU_RS04020at 909.302 kb on + strand, within PFLU_RS04020at 909.303 kb on - strand, within PFLU_RS04020at 909.343 kb on + strand, within PFLU_RS04020at 909.343 kb on + strand, within PFLU_RS04020at 909.440 kb on + strand, within PFLU_RS04020at 909.563 kb on + strand, within PFLU_RS04020at 909.563 kb on + strand, within PFLU_RS04020at 909.564 kb on - strand, within PFLU_RS04020at 909.564 kb on - strand, within PFLU_RS04020at 909.565 kb on + strand, within PFLU_RS04020at 909.565 kb on + strand, within PFLU_RS04020at 909.566 kb on - strand, within PFLU_RS04020at 909.566 kb on - strand, within PFLU_RS04020at 909.566 kb on - strand, within PFLU_RS04020at 909.743 kb on + strand, within PFLU_RS04020at 909.743 kb on + strand, within PFLU_RS04020at 909.839 kb on - strand, within PFLU_RS04020

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C); with MOPS
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907,197 + PFLU_RS04010 0.74 +0.4
907,198 - PFLU_RS04010 0.74 +0.4
907,198 - PFLU_RS04010 0.74 -0.4
907,210 + PFLU_RS04010 0.75 +0.0
907,210 + PFLU_RS04010 0.75 +0.6
907,210 + PFLU_RS04010 0.75 +1.6
907,210 + PFLU_RS04010 0.75 -1.6
907,210 + PFLU_RS04010 0.75 -0.5
907,210 + PFLU_RS04010 0.75 +0.2
907,211 - PFLU_RS04010 0.75 -0.4
907,211 - PFLU_RS04010 0.75 +0.2
907,211 - PFLU_RS04010 0.75 +0.6
907,211 - PFLU_RS04010 0.75 +0.7
907,211 - PFLU_RS04010 0.75 -0.1
907,211 - PFLU_RS04010 0.75 -1.6
907,605 + PFLU_RS04010 0.88 -0.6
907,605 + PFLU_RS04010 0.88 -1.9
907,606 - PFLU_RS04010 0.88 -0.1
907,606 - PFLU_RS04010 0.88 -0.1
907,922 - +0.2
907,935 + -0.3
907,935 + -1.4
907,935 + -0.4
907,935 + -2.1
907,935 + -1.6
907,935 + -0.6
907,936 - +0.5
907,936 - +1.3
908,213 + PFLU_RS04015 0.30 +0.6
908,213 + PFLU_RS04015 0.30 -0.4
908,214 - PFLU_RS04015 0.30 +2.1
908,214 - PFLU_RS04015 0.30 +4.5
908,607 + PFLU_RS04015 0.73 +0.6
908,607 + PFLU_RS04015 0.73 -1.4
908,607 + PFLU_RS04015 0.73 +1.0
908,608 - PFLU_RS04015 0.73 -0.6
908,642 + PFLU_RS04015 0.76 -0.6
908,856 + +1.5
908,856 + -0.4
908,856 + -1.6
908,856 + +0.4
908,856 + -0.3
908,856 + -1.4
908,856 + +1.3
908,856 + -1.2
908,856 + +1.5
908,857 - +1.0
908,857 - -1.2
908,857 - +0.4
908,857 - +0.8
908,857 - -1.7
908,857 - -0.8
908,857 - +0.3
908,857 - -1.3
908,857 - +0.1
908,857 - +0.4
908,857 - -0.5
908,857 - +0.0
908,877 + +1.3
908,877 + +0.7
908,878 - +0.7
908,888 - +0.1
908,968 + +0.9
908,969 - -1.0
908,969 - +1.3
909,073 + PFLU_RS04020 0.12 -0.3
909,073 + PFLU_RS04020 0.12 +1.8
909,074 - PFLU_RS04020 0.12 +0.8
909,074 - PFLU_RS04020 0.12 -1.6
909,144 + PFLU_RS04020 0.16 +1.7
909,145 - PFLU_RS04020 0.16 +0.2
909,176 + PFLU_RS04020 0.18 -0.2
909,176 + PFLU_RS04020 0.18 -0.7
909,176 + PFLU_RS04020 0.18 +1.0
909,176 + PFLU_RS04020 0.18 +0.7
909,176 + PFLU_RS04020 0.18 +0.1
909,176 + PFLU_RS04020 0.18 +1.0
909,176 + PFLU_RS04020 0.18 +1.4
909,176 + PFLU_RS04020 0.18 -0.4
909,176 + PFLU_RS04020 0.18 +0.9
909,176 + PFLU_RS04020 0.18 -0.6
909,176 + PFLU_RS04020 0.18 +0.1
909,176 + PFLU_RS04020 0.18 +1.1
909,176 + PFLU_RS04020 0.18 +0.6
909,176 + PFLU_RS04020 0.18 +0.4
909,177 - PFLU_RS04020 0.18 -0.3
909,177 - PFLU_RS04020 0.18 +0.6
909,177 - PFLU_RS04020 0.18 -1.1
909,177 - PFLU_RS04020 0.18 +0.8
909,177 - PFLU_RS04020 0.18 +1.7
909,177 - PFLU_RS04020 0.18 +0.7
909,177 - PFLU_RS04020 0.18 +0.9
909,177 - PFLU_RS04020 0.18 +0.1
909,177 - PFLU_RS04020 0.18 -0.2
909,177 - PFLU_RS04020 0.18 +1.2
909,177 - PFLU_RS04020 0.18 +1.0
909,302 + PFLU_RS04020 0.25 +1.7
909,303 - PFLU_RS04020 0.25 -0.8
909,343 + PFLU_RS04020 0.28 +1.2
909,343 + PFLU_RS04020 0.28 +1.7
909,440 + PFLU_RS04020 0.33 +0.6
909,563 + PFLU_RS04020 0.40 -1.7
909,563 + PFLU_RS04020 0.40 +1.0
909,564 - PFLU_RS04020 0.41 +2.5
909,564 - PFLU_RS04020 0.41 +1.7
909,565 + PFLU_RS04020 0.41 +0.2
909,565 + PFLU_RS04020 0.41 +2.1
909,566 - PFLU_RS04020 0.41 +1.0
909,566 - PFLU_RS04020 0.41 +0.1
909,566 - PFLU_RS04020 0.41 +0.3
909,743 + PFLU_RS04020 0.51 +0.1
909,743 + PFLU_RS04020 0.51 +0.4
909,839 - PFLU_RS04020 0.57 +0.5

Or see this region's nucleotide sequence