Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08655

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,622,035	+		MMP_RS08650	0.49	+1.4
1,622,221	-		MMP_RS08650	0.60	+1.2
1,622,222	+		MMP_RS08650	0.60	-1.4
1,622,446	+		MMP_RS08650	0.72	-1.0
1,622,528	-		MMP_RS08650	0.77	-0.5
1,622,712	-		MMP_RS08650	0.87	-1.8
1,622,793	-				-0.9
1,622,832	-				-2.3
1,622,975	-				+0.6
1,622,979	-				-0.9
1,623,049	+				+0.4
1,623,202	-		MMP_RS08655	0.21	-0.1
1,623,221	+		MMP_RS08655	0.22	+0.6
1,623,221	+		MMP_RS08655	0.22	-0.2
1,623,222	-		MMP_RS08655	0.22	+0.1
1,623,222	-		MMP_RS08655	0.22	+0.6
1,623,222	-		MMP_RS08655	0.22	-0.1
1,623,222	-		MMP_RS08655	0.22	+0.3
1,623,223	+		MMP_RS08655	0.22	+0.6
1,623,223	+		MMP_RS08655	0.22	+0.6
1,623,223	+		MMP_RS08655	0.22	-0.0
1,623,223	+		MMP_RS08655	0.22	+0.4
1,623,223	+		MMP_RS08655	0.22	-0.4
1,623,226	-		MMP_RS08655	0.23	+0.5
1,623,226	-		MMP_RS08655	0.23	-0.3
1,623,226	-		MMP_RS08655	0.23	-0.3
1,623,227	+		MMP_RS08655	0.23	+0.1
1,623,267	-		MMP_RS08655	0.26	+0.3
1,623,267	-		MMP_RS08655	0.26	-0.4
1,623,268	+		MMP_RS08655	0.26	+0.2
1,623,495	-		MMP_RS08655	0.44	+0.1
1,623,603	+		MMP_RS08655	0.52	+0.1
1,623,752	-		MMP_RS08655	0.64	+0.1
1,623,752	-		MMP_RS08655	0.64	+0.4
1,623,753	+		MMP_RS08655	0.64	-0.1
1,623,753	+		MMP_RS08655	0.64	+0.4
1,623,753	+		MMP_RS08655	0.64	-0.2
1,623,753	+		MMP_RS08655	0.64	+0.1
1,623,753	+		MMP_RS08655	0.64	+0.1
1,624,002	+		MMP_RS08655	0.83	+0.2
1,624,003	-		MMP_RS08655	0.83	+1.0
1,624,004	+		MMP_RS08655	0.83	+0.4
1,624,004	+		MMP_RS08655	0.83	+0.1
1,624,004	+		MMP_RS08655	0.83	-0.3
1,624,170	-				-0.1
1,624,171	+				+0.5
1,624,180	+				+0.1
1,624,180	+				+0.1
1,624,221	+				-0.1
1,624,251	+				-0.0
1,624,251	+				+0.1
1,624,290	+				+0.2
1,624,320	+				+0.7
1,624,570	+		MMP_RS08660	0.21	+1.3
1,624,570	+		MMP_RS08660	0.21	+0.5
1,624,753	+		MMP_RS08660	0.34	+0.6
1,624,846	-		MMP_RS08660	0.41	+0.1
1,624,867	+		MMP_RS08660	0.43	+1.0
1,624,869	+		MMP_RS08660	0.43	+0.1
1,624,937	-		MMP_RS08660	0.48	-0.6
1,624,984	-		MMP_RS08660	0.51	+0.6
1,624,986	-		MMP_RS08660	0.51	-0.1
1,624,987	+		MMP_RS08660	0.51	-0.9
1,624,993	+		MMP_RS08660	0.51	-1.3
1,625,042	-		MMP_RS08660	0.55	-1.4
1,625,049	-		MMP_RS08660	0.55	-0.1
1,625,050	+		MMP_RS08660	0.56	+0.7
1,625,070	-		MMP_RS08660	0.57	+0.2
1,625,070	-		MMP_RS08660	0.57	+1.8
1,625,140	-		MMP_RS08660	0.62	+0.5