Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06295

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,210,965	-		MMP_RS06290	0.12	+0.8
1,211,028	-		MMP_RS06290	0.18	+0.3
1,211,029	+		MMP_RS06290	0.18	+0.6
1,211,112	-		MMP_RS06290	0.27	-0.0
1,211,569	-		MMP_RS06290	0.74	+0.6
1,211,593	+		MMP_RS06290	0.76	+0.8
1,211,819	-				+1.6
1,211,902	+				-0.6
1,211,947	-				-1.4
1,212,086	+		MMP_RS06295	0.12	-2.1
1,212,167	+		MMP_RS06295	0.17	-1.7
1,212,172	-		MMP_RS06295	0.17	-3.2
1,212,193	+		MMP_RS06295	0.19	-2.4
1,212,247	-		MMP_RS06295	0.23	-2.4
1,212,248	+		MMP_RS06295	0.23	-1.8
1,212,248	+		MMP_RS06295	0.23	-2.8
1,212,260	-		MMP_RS06295	0.23	-2.9
1,212,260	-		MMP_RS06295	0.23	-1.3
1,212,265	-		MMP_RS06295	0.24	-4.0
1,212,394	-		MMP_RS06295	0.32	-2.0
1,212,442	-		MMP_RS06295	0.36	-2.7
1,212,445	-		MMP_RS06295	0.36	-0.8
1,212,520	-		MMP_RS06295	0.41	-0.7
1,212,791	+		MMP_RS06295	0.59	-1.9
1,212,947	+		MMP_RS06295	0.70	-2.5
1,213,158	-		MMP_RS06295	0.84	-2.0
1,213,174	-		MMP_RS06295	0.85	-2.4
1,213,174	-		MMP_RS06295	0.85	-3.4
1,213,394	-				-1.8
1,213,408	+				-0.4
1,213,413	-				-0.1
1,213,476	-				-0.1
1,213,476	-				-0.1
1,213,477	+				+0.3
1,213,614	+				+0.2
1,213,618	+				-0.0
1,213,628	+				-0.2
1,213,629	-				-0.2
1,213,630	+				+0.2
1,213,640	-				-0.5
1,213,647	-				+0.5
1,213,648	+				+0.3
1,213,651	+				-0.8
1,213,651	+				+0.2
1,213,654	+				-0.2
1,213,708	+				+0.2
1,213,747	-				+0.2
1,213,748	+				-0.4
1,213,779	-		MMP_RS06300	0.13	+0.6
1,213,833	+		MMP_RS06300	0.20	+0.4
1,214,030	-		MMP_RS06300	0.45	+0.1
1,214,030	-		MMP_RS06300	0.45	-0.1
1,214,130	+		MMP_RS06300	0.59	+0.0
1,214,130	+		MMP_RS06300	0.59	+0.0
1,214,187	+		MMP_RS06300	0.66	+0.6
1,214,217	-		MMP_RS06300	0.70	+0.1
1,214,218	+		MMP_RS06300	0.70	+0.2
1,214,220	+		MMP_RS06300	0.70	-0.1
1,214,230	-		MMP_RS06300	0.72	+0.3
1,214,242	+		MMP_RS06300	0.73	+0.2