Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05960

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,142,401	+		MMP_RS05950	0.85	-0.1
1,142,466	-				+0.3
1,142,504	+				-0.5
1,142,533	+				-0.3
1,142,568	+				-0.5
1,142,619	+				-0.1
1,142,636	-				-1.0
1,142,650	+				+0.0
1,142,659	+				-0.8
1,142,665	-				-0.1
1,142,675	-				-0.6
1,142,679	-				-0.2
1,142,679	-				-0.1
1,142,679	-				+0.7
1,142,680	+				+0.1
1,142,688	+				+0.1
1,142,723	+				-0.1
1,142,725	-				+0.1
1,142,727	-				-0.2
1,142,729	-				-0.3
1,142,729	-				-0.1
1,142,730	+				-0.1
1,142,730	+				-0.0
1,142,746	-				+0.1
1,142,746	-				+0.0
1,142,747	+				+0.2
1,142,747	+				+0.5
1,142,747	+				+0.1
1,142,747	+				+0.1
1,142,748	-				+0.8
1,142,748	-				-0.2
1,142,749	+				-0.0
1,142,750	-				-0.0
1,142,751	+				+0.4
1,142,777	-				-0.1
1,143,032	-		MMP_RS05955	0.40	-0.4
1,143,098	+		MMP_RS05955	0.52	+0.1
1,143,486	+		MMP_RS05960	0.11	-0.1
1,143,675	+		MMP_RS05960	0.31	-0.2
1,143,709	-		MMP_RS05960	0.35	-0.2
1,143,742	+		MMP_RS05960	0.39	+0.5
1,143,744	+		MMP_RS05960	0.39	+0.4
1,143,769	-		MMP_RS05960	0.42	+0.1
1,143,778	-		MMP_RS05960	0.43	+0.1
1,143,779	+		MMP_RS05960	0.43	+0.3
1,143,783	-		MMP_RS05960	0.43	+0.4
1,143,856	+		MMP_RS05960	0.51	+0.3
1,143,871	-		MMP_RS05960	0.53	+0.3
1,143,871	-		MMP_RS05960	0.53	+0.9
1,143,886	-		MMP_RS05960	0.55	+0.3
1,143,886	-		MMP_RS05960	0.55	+0.0
1,143,887	+		MMP_RS05960	0.55	-0.3
1,143,887	+		MMP_RS05960	0.55	-0.2
1,143,958	-		MMP_RS05960	0.63	+0.9
1,143,960	-		MMP_RS05960	0.63	+0.2
1,143,960	-		MMP_RS05960	0.63	+0.2
1,143,961	+		MMP_RS05960	0.63	-0.0
1,143,961	+		MMP_RS05960	0.63	-0.3
1,143,963	-		MMP_RS05960	0.63	+0.1
1,143,964	+		MMP_RS05960	0.63	+0.5
1,143,977	-		MMP_RS05960	0.65	+0.4
1,144,193	+		MMP_RS05960	0.89	+0.0
1,144,293	-				+0.0
1,144,544	+		MMP_RS05965	0.69	-0.2
1,144,580	+		MMP_RS05965	0.81	-0.2
1,144,580	+		MMP_RS05965	0.81	-0.2
1,144,653	+				+0.1
1,144,785	+		MMP_RS05970	0.37	-0.0
1,144,829	-		MMP_RS05970	0.49	+0.2
1,144,830	+		MMP_RS05970	0.49	-0.0
1,144,853	-		MMP_RS05970	0.56	-0.5
1,145,108	-		MMP_RS05975	0.29	+0.2
1,145,288	-				-0.2
1,145,292	+				-0.1