Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04790

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
910,844	-		MMP_RS04780	0.65	-2.5
910,845	+		MMP_RS04780	0.65	-0.6
910,845	+		MMP_RS04780	0.65	-1.4
910,846	-		MMP_RS04780	0.66	-1.2
910,898	-		MMP_RS04780	0.81	-1.7
910,924	+		MMP_RS04780	0.89	-1.7
910,927	+				-0.8
910,941	+				+0.5
910,941	+				+0.6
910,977	-				+0.4
910,977	-				+0.2
910,978	+				+0.1
910,978	+				-0.4
910,978	+				-0.2
910,992	-				+0.1
910,995	-				+0.4
910,995	-				-0.2
910,995	-				-0.2
910,996	+				+0.5
910,996	+				-0.1
910,996	+				-0.1
911,001	-				-0.3
911,001	-				+0.1
911,001	-				+0.2
911,002	+				+0.1
911,002	+				+0.2
911,005	-				+0.5
911,006	+				-0.3
911,009	-				+0.1
911,010	+				-0.1
911,022	-				-0.3
911,022	-				+0.4
911,023	+				-0.8
911,023	+				-0.3
911,024	-				+0.1
911,024	-				-0.2
911,024	-				-0.1
911,024	-				-0.4
911,024	-				-0.2
911,024	-				+0.1
911,024	-				+0.2
911,024	-				+0.3
911,024	-				-0.4
911,025	+				+0.2
911,025	+				+0.1
911,025	+				-0.6
911,025	+				+0.2
911,025	+				+0.7
911,025	+				-0.2
911,025	+				+0.0
911,025	+				+0.1
911,027	-				-0.2
911,027	-				+0.7
911,027	-				-0.4
911,027	-				-0.5
911,027	-				+0.1
911,027	-				+0.0
911,027	-				+0.2
911,027	-				+0.2
911,027	-				+0.4
911,027	-				+0.1
911,027	-				-0.1
911,028	+				+0.2
911,028	+				-0.1
911,028	+				+0.4
911,028	+				+0.0
911,028	+				+0.1
911,028	+				+0.5
911,028	+				+0.2
911,028	+				-0.1
911,028	+				+0.1
911,028	+				-0.1
911,028	+				-0.6
911,028	+				+0.3
911,029	-				+0.1
911,029	-				+0.2
911,029	-				-0.4
911,029	-				-0.3
911,029	-				-0.1
911,030	+				-0.1
911,030	+				+0.5
911,030	+				+0.2
911,030	+				-0.1
911,030	+				+0.4
911,030	+				-0.3
911,031	-				+0.2
911,031	-				-0.3
911,031	-				+0.9
911,031	-				-0.1
911,032	+				+0.2
911,032	+				-0.3
911,032	+				+0.1
911,051	+				+0.1
911,055	-				+0.4
911,055	-				+0.0
911,055	-				+0.1
911,055	-				+0.3
911,056	+				+0.0
911,056	+				+0.1
911,056	+				-0.3
911,056	+				+0.3
911,056	+				-0.3
911,056	+				-0.1
911,057	-				+0.7
911,057	-				-0.0
911,057	-				+0.1
911,057	-				-0.1
911,058	+				+0.4
911,058	+				-0.0
911,058	+				+0.3
911,091	+				+0.2
911,160	+		MMP_RS04785	0.13	+0.7
911,185	-		MMP_RS04785	0.17	+0.1
911,187	-		MMP_RS04785	0.18	+0.0
911,204	-		MMP_RS04785	0.20	-0.1
911,205	+		MMP_RS04785	0.20	+0.1
911,280	+		MMP_RS04785	0.32	+0.3
911,393	+		MMP_RS04785	0.49	+0.5
911,403	+		MMP_RS04785	0.51	-0.2
911,408	-		MMP_RS04785	0.51	+0.2
911,417	-		MMP_RS04785	0.53	+0.2
911,419	-		MMP_RS04785	0.53	-0.2
911,419	-		MMP_RS04785	0.53	+0.1
911,420	+		MMP_RS04785	0.53	+0.0
911,422	-		MMP_RS04785	0.54	-0.5
911,422	-		MMP_RS04785	0.54	-0.0
911,425	-		MMP_RS04785	0.54	-0.1
911,436	+		MMP_RS04785	0.56	+0.3
911,451	+		MMP_RS04785	0.58	+0.0
911,455	-		MMP_RS04785	0.59	-0.1
911,461	-		MMP_RS04785	0.60	-0.3
911,461	-		MMP_RS04785	0.60	-0.2
911,462	+		MMP_RS04785	0.60	-0.3
911,462	+		MMP_RS04785	0.60	+0.2
911,466	+		MMP_RS04785	0.60	+0.1
911,466	+		MMP_RS04785	0.60	+0.5
911,485	-		MMP_RS04785	0.63	+0.2
911,485	-		MMP_RS04785	0.63	-0.0
911,485	-		MMP_RS04785	0.63	+0.4
911,486	+		MMP_RS04785	0.63	+0.1
911,488	-		MMP_RS04785	0.64	+0.1
911,495	-		MMP_RS04785	0.65	+0.1
911,495	-		MMP_RS04785	0.65	+0.4
911,495	-		MMP_RS04785	0.65	-0.2
911,496	+		MMP_RS04785	0.65	-0.1
911,496	+		MMP_RS04785	0.65	+0.2
911,496	+		MMP_RS04785	0.65	+0.1
911,496	+		MMP_RS04785	0.65	+0.1
911,563	-		MMP_RS04785	0.75	+0.2
911,564	+		MMP_RS04785	0.75	+0.4
911,602	-		MMP_RS04785	0.81	+0.4
911,603	+		MMP_RS04785	0.81	+0.2
911,603	+		MMP_RS04785	0.81	-0.0
911,607	-		MMP_RS04785	0.82	-0.2
911,610	+		MMP_RS04785	0.82	+0.3
911,615	+		MMP_RS04785	0.83	-0.0
911,689	+				-0.2
911,700	+				+0.3
911,811	-				+0.8
911,904	-		MMP_RS04790	0.21	+0.9
911,908	-		MMP_RS04790	0.22	+0.4
912,140	+		MMP_RS04790	0.50	+0.4
912,140	+		MMP_RS04790	0.50	+0.6
912,140	+		MMP_RS04790	0.50	-0.2
912,141	-		MMP_RS04790	0.50	-0.5
912,249	-		MMP_RS04790	0.64	-0.2
912,249	-		MMP_RS04790	0.64	+0.7
912,297	-		MMP_RS04790	0.69	+0.3
912,297	-		MMP_RS04790	0.69	+0.4
912,298	+		MMP_RS04790	0.70	-0.2
912,302	-		MMP_RS04790	0.70	+0.3
912,303	+		MMP_RS04790	0.70	+0.3
912,360	-		MMP_RS04790	0.77	-0.3
912,360	-		MMP_RS04790	0.77	+0.6
912,361	+		MMP_RS04790	0.77	-0.3
912,393	-		MMP_RS04790	0.81	+0.6
912,434	+		MMP_RS04790	0.86	+0.3
912,508	-				-0.1
912,571	+				-0.7
912,609	+				-0.0
912,688	+		MMP_RS04795	0.22	+0.2
912,721	-		MMP_RS04795	0.28	-0.1
912,722	+		MMP_RS04795	0.28	-0.6
912,722	+		MMP_RS04795	0.28	-0.2
912,722	+		MMP_RS04795	0.28	+0.1
912,722	+		MMP_RS04795	0.28	+0.2
912,859	+		MMP_RS04795	0.51	-0.4
912,871	-		MMP_RS04795	0.53	-0.3
912,901	+		MMP_RS04795	0.58	+0.3
912,937	-		MMP_RS04795	0.64	+0.7
912,978	-		MMP_RS04795	0.70	+0.8
913,119	+				-0.1
913,132	+				+0.0
913,135	+				-0.4
913,135	+				+0.3
913,136	-				-0.1
913,136	-				+0.0
913,137	+				-0.3
913,139	-				+0.0
913,221	-		MMP_RS04800	0.12	+0.1
913,248	-		MMP_RS04800	0.18	-0.1
913,289	-		MMP_RS04800	0.28	-0.0
913,290	+		MMP_RS04800	0.28	-0.5
913,290	+		MMP_RS04800	0.28	-0.1
913,290	+		MMP_RS04800	0.28	+0.3
913,304	+		MMP_RS04800	0.31	+0.3
913,342	+		MMP_RS04800	0.40	+0.1
913,342	-		MMP_RS04800	0.40	+0.2
913,401	-		MMP_RS04800	0.53	+0.1
913,401	-		MMP_RS04800	0.53	-0.5
913,438	+		MMP_RS04800	0.61	-0.2
913,462	+		MMP_RS04800	0.67	+0.3