Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04765 and MMP_RS04770 are separated by 97 nucleotides MMP_RS04770 and MMP_RS04775 are separated by 31 nucleotides MMP_RS04775 and MMP_RS04780 are separated by 165 nucleotides MMP_RS04780 and MMP_RS04785 are separated by 113 nucleotides
MMP_RS04765: MMP_RS04765 - asparagine synthase (glutamine-hydrolyzing), at 906,776 to 908,317
_RS04765
MMP_RS04770: MMP_RS04770 - dihydroorotate dehydrogenase electron transfer subunit, at 908,415 to 909,182
_RS04770
MMP_RS04775: MMP_RS04775 - adenosylhomocysteinase, at 909,214 to 910,461
_RS04775
MMP_RS04780: MMP_RS04780 - ribonuclease P, at 910,627 to 910,959
_RS04780
MMP_RS04785: MMP_RS04785 - hypothetical protein, at 911,073 to 911,723
_RS04785
Position (kb) 909
910
911 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 908.231 kb on - strand at 908.231 kb on - strand at 908.232 kb on + strand at 908.294 kb on - strand at 908.322 kb on + strand at 908.362 kb on - strand at 908.376 kb on + strand at 908.376 kb on + strand at 908.376 kb on + strand at 908.376 kb on + strand at 908.377 kb on - strand at 908.377 kb on - strand at 908.377 kb on - strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.381 kb on - strand at 908.381 kb on - strand at 908.382 kb on + strand at 908.418 kb on - strand at 908.418 kb on - strand at 908.463 kb on - strand at 908.570 kb on + strand at 908.654 kb on - strand at 908.658 kb on - strand at 908.659 kb on + strand at 908.864 kb on - strand at 909.183 kb on + strand at 909.185 kb on - strand at 909.243 kb on + strand at 909.388 kb on - strand, within MMP_RS04775 at 909.388 kb on - strand, within MMP_RS04775 at 909.389 kb on + strand, within MMP_RS04775 at 909.598 kb on - strand, within MMP_RS04775 at 909.868 kb on + strand, within MMP_RS04775 at 909.874 kb on - strand, within MMP_RS04775 at 909.933 kb on - strand at 910.015 kb on + strand, within MMP_RS04775 at 910.015 kb on + strand, within MMP_RS04775 at 910.239 kb on - strand, within MMP_RS04775 at 910.393 kb on + strand at 910.393 kb on + strand at 910.393 kb on + strand at 910.455 kb on - strand at 910.472 kb on - strand at 910.473 kb on + strand at 910.473 kb on + strand at 910.473 kb on + strand at 910.477 kb on + strand at 910.478 kb on - strand at 910.524 kb on - strand at 910.525 kb on + strand at 910.529 kb on - strand at 910.531 kb on - strand at 910.531 kb on - strand at 910.552 kb on - strand at 910.559 kb on - strand at 910.559 kb on - strand at 910.560 kb on + strand at 910.571 kb on - strand at 910.571 kb on - strand at 910.572 kb on + strand at 910.576 kb on + strand at 910.576 kb on + strand at 910.593 kb on + strand at 910.604 kb on - strand at 910.610 kb on - strand at 910.611 kb on + strand at 910.611 kb on + strand at 910.611 kb on + strand at 910.613 kb on - strand at 910.614 kb on + strand at 910.614 kb on + strand at 910.635 kb on + strand at 910.687 kb on + strand, within MMP_RS04780 at 910.687 kb on + strand, within MMP_RS04780 at 910.844 kb on - strand, within MMP_RS04780 at 910.845 kb on + strand, within MMP_RS04780 at 910.845 kb on + strand, within MMP_RS04780 at 910.846 kb on - strand, within MMP_RS04780 at 910.898 kb on - strand, within MMP_RS04780 at 910.924 kb on + strand, within MMP_RS04780 at 910.927 kb on + strand at 910.941 kb on + strand at 910.941 kb on + strand at 910.977 kb on - strand at 910.977 kb on - strand at 910.978 kb on + strand at 910.978 kb on + strand at 910.978 kb on + strand at 910.992 kb on - strand at 910.995 kb on - strand at 910.995 kb on - strand at 910.995 kb on - strand at 910.996 kb on + strand at 910.996 kb on + strand at 910.996 kb on + strand at 911.001 kb on - strand at 911.001 kb on - strand at 911.001 kb on - strand at 911.002 kb on + strand at 911.002 kb on + strand at 911.005 kb on - strand at 911.006 kb on + strand at 911.009 kb on - strand at 911.010 kb on + strand at 911.022 kb on - strand at 911.022 kb on - strand at 911.023 kb on + strand at 911.023 kb on + strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.029 kb on - strand at 911.029 kb on - strand at 911.029 kb on - strand at 911.029 kb on - strand at 911.029 kb on - strand at 911.030 kb on + strand at 911.030 kb on + strand at 911.030 kb on + strand at 911.030 kb on + strand at 911.030 kb on + strand at 911.030 kb on + strand at 911.031 kb on - strand at 911.031 kb on - strand at 911.031 kb on - strand at 911.031 kb on - strand at 911.032 kb on + strand at 911.032 kb on + strand at 911.032 kb on + strand at 911.051 kb on + strand at 911.055 kb on - strand at 911.055 kb on - strand at 911.055 kb on - strand at 911.055 kb on - strand at 911.056 kb on + strand at 911.056 kb on + strand at 911.056 kb on + strand at 911.056 kb on + strand at 911.056 kb on + strand at 911.056 kb on + strand at 911.057 kb on - strand at 911.057 kb on - strand at 911.057 kb on - strand at 911.057 kb on - strand at 911.058 kb on + strand at 911.058 kb on + strand at 911.058 kb on + strand at 911.091 kb on + strand at 911.160 kb on + strand, within MMP_RS04785 at 911.185 kb on - strand, within MMP_RS04785 at 911.187 kb on - strand, within MMP_RS04785 at 911.204 kb on - strand, within MMP_RS04785 at 911.205 kb on + strand, within MMP_RS04785 at 911.280 kb on + strand, within MMP_RS04785 at 911.393 kb on + strand, within MMP_RS04785 at 911.403 kb on + strand, within MMP_RS04785 at 911.408 kb on - strand, within MMP_RS04785 at 911.417 kb on - strand, within MMP_RS04785 at 911.419 kb on - strand, within MMP_RS04785 at 911.419 kb on - strand, within MMP_RS04785 at 911.420 kb on + strand, within MMP_RS04785 at 911.422 kb on - strand, within MMP_RS04785 at 911.422 kb on - strand, within MMP_RS04785 at 911.425 kb on - strand, within MMP_RS04785 at 911.436 kb on + strand, within MMP_RS04785 at 911.451 kb on + strand, within MMP_RS04785 at 911.455 kb on - strand, within MMP_RS04785 at 911.461 kb on - strand, within MMP_RS04785 at 911.461 kb on - strand, within MMP_RS04785
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 908,231 - -3.0 908,231 - -2.1 908,232 + -1.6 908,294 - -0.5 908,322 + -1.0 908,362 - -1.4 908,376 + +0.2 908,376 + -2.0 908,376 + -1.2 908,376 + -1.0 908,377 - -0.9 908,377 - -1.5 908,377 - -0.5 908,378 + -0.9 908,378 + -0.9 908,378 + -1.5 908,378 + -1.7 908,378 + -1.1 908,381 - -0.2 908,381 - -0.8 908,382 + -0.1 908,418 - -0.4 908,418 - -0.2 908,463 - -0.9 908,570 + -2.5 908,654 - -3.5 908,658 - -0.1 908,659 + -0.7 908,864 - -1.9 909,183 + -3.6 909,185 - -1.8 909,243 + -3.1 909,388 - MMP_RS04775 0.14 -1.7 909,388 - MMP_RS04775 0.14 -1.3 909,389 + MMP_RS04775 0.14 -2.9 909,598 - MMP_RS04775 0.31 -0.3 909,868 + MMP_RS04775 0.52 -1.1 909,874 - MMP_RS04775 0.53 -0.9 909,933 - -1.1 910,015 + MMP_RS04775 0.64 -2.6 910,015 + MMP_RS04775 0.64 -2.3 910,239 - MMP_RS04775 0.82 -4.3 910,393 + -2.4 910,393 + -3.6 910,393 + -1.5 910,455 - -1.6 910,472 - -2.4 910,473 + -0.4 910,473 + -1.1 910,473 + -0.3 910,477 + -1.4 910,478 - -0.2 910,524 - -1.6 910,525 + -2.5 910,529 - -1.0 910,531 - -0.8 910,531 - -1.5 910,552 - -0.0 910,559 - -0.5 910,559 - -0.1 910,560 + -0.4 910,571 - +0.7 910,571 - -0.0 910,572 + +0.4 910,576 + -0.0 910,576 + +0.6 910,593 + +0.1 910,604 - -2.3 910,610 - -2.3 910,611 + +0.5 910,611 + +0.1 910,611 + -0.6 910,613 - -1.7 910,614 + +0.8 910,614 + -1.5 910,635 + -1.9 910,687 + MMP_RS04780 0.18 -1.9 910,687 + MMP_RS04780 0.18 -2.6 910,844 - MMP_RS04780 0.65 -2.5 910,845 + MMP_RS04780 0.65 -0.6 910,845 + MMP_RS04780 0.65 -1.4 910,846 - MMP_RS04780 0.66 -1.2 910,898 - MMP_RS04780 0.81 -1.7 910,924 + MMP_RS04780 0.89 -1.7 910,927 + -0.8 910,941 + +0.5 910,941 + +0.6 910,977 - +0.4 910,977 - +0.2 910,978 + +0.1 910,978 + -0.4 910,978 + -0.2 910,992 - +0.1 910,995 - +0.4 910,995 - -0.2 910,995 - -0.2 910,996 + +0.5 910,996 + -0.1 910,996 + -0.1 911,001 - -0.3 911,001 - +0.1 911,001 - +0.2 911,002 + +0.1 911,002 + +0.2 911,005 - +0.5 911,006 + -0.3 911,009 - +0.1 911,010 + -0.1 911,022 - -0.3 911,022 - +0.4 911,023 + -0.8 911,023 + -0.3 911,024 - +0.1 911,024 - -0.2 911,024 - -0.1 911,024 - -0.4 911,024 - -0.2 911,024 - +0.1 911,024 - +0.2 911,024 - +0.3 911,024 - -0.4 911,025 + +0.2 911,025 + +0.1 911,025 + -0.6 911,025 + +0.2 911,025 + +0.7 911,025 + -0.2 911,025 + +0.0 911,025 + +0.1 911,027 - -0.2 911,027 - +0.7 911,027 - -0.4 911,027 - -0.5 911,027 - +0.1 911,027 - +0.0 911,027 - +0.2 911,027 - +0.2 911,027 - +0.4 911,027 - +0.1 911,027 - -0.1 911,028 + +0.2 911,028 + -0.1 911,028 + +0.4 911,028 + +0.0 911,028 + +0.1 911,028 + +0.5 911,028 + +0.2 911,028 + -0.1 911,028 + +0.1 911,028 + -0.1 911,028 + -0.6 911,028 + +0.3 911,029 - +0.1 911,029 - +0.2 911,029 - -0.4 911,029 - -0.3 911,029 - -0.1 911,030 + -0.1 911,030 + +0.5 911,030 + +0.2 911,030 + -0.1 911,030 + +0.4 911,030 + -0.3 911,031 - +0.2 911,031 - -0.3 911,031 - +0.9 911,031 - -0.1 911,032 + +0.2 911,032 + -0.3 911,032 + +0.1 911,051 + +0.1 911,055 - +0.4 911,055 - +0.0 911,055 - +0.1 911,055 - +0.3 911,056 + +0.0 911,056 + +0.1 911,056 + -0.3 911,056 + +0.3 911,056 + -0.3 911,056 + -0.1 911,057 - +0.7 911,057 - -0.0 911,057 - +0.1 911,057 - -0.1 911,058 + +0.4 911,058 + -0.0 911,058 + +0.3 911,091 + +0.2 911,160 + MMP_RS04785 0.13 +0.7 911,185 - MMP_RS04785 0.17 +0.1 911,187 - MMP_RS04785 0.18 +0.0 911,204 - MMP_RS04785 0.20 -0.1 911,205 + MMP_RS04785 0.20 +0.1 911,280 + MMP_RS04785 0.32 +0.3 911,393 + MMP_RS04785 0.49 +0.5 911,403 + MMP_RS04785 0.51 -0.2 911,408 - MMP_RS04785 0.51 +0.2 911,417 - MMP_RS04785 0.53 +0.2 911,419 - MMP_RS04785 0.53 -0.2 911,419 - MMP_RS04785 0.53 +0.1 911,420 + MMP_RS04785 0.53 +0.0 911,422 - MMP_RS04785 0.54 -0.5 911,422 - MMP_RS04785 0.54 -0.0 911,425 - MMP_RS04785 0.54 -0.1 911,436 + MMP_RS04785 0.56 +0.3 911,451 + MMP_RS04785 0.58 +0.0 911,455 - MMP_RS04785 0.59 -0.1 911,461 - MMP_RS04785 0.60 -0.3 911,461 - MMP_RS04785 0.60 -0.2
Or see this region's nucleotide sequence