Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04680 and MMP_RS04685 are separated by 66 nucleotides MMP_RS04685 and MMP_RS04690 are separated by 11 nucleotides MMP_RS04690 and MMP_RS09010 are separated by 87 nucleotides MMP_RS09010 and MMP_RS04695 are separated by 35 nucleotides
MMP_RS04680: MMP_RS04680 - NOG1 family protein, at 896,279 to 897,316
_RS04680
MMP_RS04685: MMP_RS04685 - DUF126 domain-containing protein, at 897,383 to 897,775
_RS04685
MMP_RS04690: MMP_RS04690 - class III signal peptide-containing protein, at 897,787 to 898,014
_RS04690
MMP_RS09010: MMP_RS09010 - hypothetical protein, at 898,102 to 898,260
_RS09010
MMP_RS04695: MMP_RS04695 - selenide water dikinase SelD, at 898,296 to 899,303
_RS04695
Position (kb) 897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 896.414 kb on + strand at 896.504 kb on + strand at 896.575 kb on + strand at 897.237 kb on - strand at 897.265 kb on + strand at 897.270 kb on + strand at 897.271 kb on - strand at 897.271 kb on - strand at 897.272 kb on + strand at 897.316 kb on - strand at 897.360 kb on - strand at 897.364 kb on + strand at 897.426 kb on + strand, within MMP_RS04685 at 897.426 kb on + strand, within MMP_RS04685 at 897.429 kb on + strand, within MMP_RS04685 at 897.432 kb on + strand, within MMP_RS04685 at 897.455 kb on - strand, within MMP_RS04685 at 897.577 kb on + strand, within MMP_RS04685 at 897.631 kb on - strand, within MMP_RS04685 at 897.897 kb on - strand, within MMP_RS04690 at 897.908 kb on - strand, within MMP_RS04690 at 897.914 kb on - strand, within MMP_RS04690 at 897.953 kb on + strand, within MMP_RS04690 at 898.001 kb on - strand at 898.001 kb on - strand at 898.043 kb on - strand at 898.049 kb on - strand at 898.049 kb on - strand at 898.049 kb on - strand at 898.050 kb on + strand at 898.050 kb on + strand at 898.051 kb on - strand at 898.051 kb on - strand at 898.051 kb on - strand at 898.054 kb on + strand at 898.069 kb on - strand at 898.070 kb on + strand at 898.075 kb on - strand at 898.075 kb on - strand at 898.079 kb on - strand at 898.079 kb on - strand at 898.079 kb on - strand at 898.080 kb on + strand at 898.080 kb on + strand at 898.082 kb on - strand at 898.098 kb on - strand at 898.099 kb on + strand at 898.099 kb on + strand at 898.129 kb on - strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.130 kb on + strand, within MMP_RS09010 at 898.139 kb on - strand, within MMP_RS09010 at 898.139 kb on - strand, within MMP_RS09010 at 898.140 kb on + strand, within MMP_RS09010 at 898.140 kb on + strand, within MMP_RS09010 at 898.165 kb on + strand, within MMP_RS09010 at 898.237 kb on - strand, within MMP_RS09010 at 898.679 kb on - strand, within MMP_RS04695
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 896,414 + -0.1 896,504 + -0.8 896,575 + -2.0 897,237 - -3.0 897,265 + -1.8 897,270 + -2.1 897,271 - -0.5 897,271 - -1.4 897,272 + -2.8 897,316 - -3.1 897,360 - -2.7 897,364 + -1.4 897,426 + MMP_RS04685 0.11 -1.6 897,426 + MMP_RS04685 0.11 -1.6 897,429 + MMP_RS04685 0.12 -2.3 897,432 + MMP_RS04685 0.12 -1.1 897,455 - MMP_RS04685 0.18 -2.0 897,577 + MMP_RS04685 0.49 -1.7 897,631 - MMP_RS04685 0.63 -0.8 897,897 - MMP_RS04690 0.48 -0.0 897,908 - MMP_RS04690 0.53 +0.3 897,914 - MMP_RS04690 0.56 -0.2 897,953 + MMP_RS04690 0.73 -0.6 898,001 - +0.0 898,001 - +0.5 898,043 - +0.5 898,049 - +0.5 898,049 - +0.0 898,049 - -0.2 898,050 + -1.6 898,050 + -0.2 898,051 - +0.3 898,051 - +0.1 898,051 - +0.0 898,054 + +0.0 898,069 - +0.0 898,070 + +0.1 898,075 - +0.2 898,075 - +0.1 898,079 - -0.3 898,079 - -0.0 898,079 - +0.4 898,080 + -0.1 898,080 + +1.0 898,082 - -0.2 898,098 - +0.0 898,099 + +0.3 898,099 + +0.1 898,129 - MMP_RS09010 0.17 +0.5 898,130 + MMP_RS09010 0.18 +0.4 898,130 + MMP_RS09010 0.18 +0.0 898,130 + MMP_RS09010 0.18 -0.1 898,139 - MMP_RS09010 0.23 +0.1 898,139 - MMP_RS09010 0.23 -0.4 898,140 + MMP_RS09010 0.24 -0.3 898,140 + MMP_RS09010 0.24 +0.5 898,165 + MMP_RS09010 0.40 -1.2 898,237 - MMP_RS09010 0.85 -0.3 898,679 - MMP_RS04695 0.38 -0.6
Or see this region's nucleotide sequence