Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04255 and MMP_RS04260 are separated by 21 nucleotides MMP_RS04260 and MMP_RS04265 are separated by 10 nucleotides MMP_RS04265 and MMP_RS04270 are separated by 13 nucleotides
MMP_RS04255: MMP_RS04255 - coenzyme F420 hydrogenase subunit beta, at 811,639 to 812,487
_RS04255
MMP_RS04260: MMP_RS04260 - coenzyme F420 hydrogenase subunit gamma, at 812,509 to 813,237
_RS04260
MMP_RS04265: MMP_RS04265 - coenzyme F420-reducing hydrogenase FrhD protein, at 813,248 to 813,748
_RS04265
MMP_RS04270: MMP_RS04270 - coenzyme F420 hydrogenase subunit alpha, at 813,762 to 814,994
_RS04270
Position (kb) 813
814 Strain fitness (log2 ratio) -1
0
1 at 812.374 kb on - strand, within MMP_RS04255 at 812.457 kb on - strand at 812.457 kb on - strand at 812.458 kb on + strand at 812.466 kb on - strand at 812.468 kb on - strand at 812.468 kb on - strand at 812.487 kb on - strand at 812.488 kb on + strand at 812.506 kb on - strand at 812.507 kb on + strand at 812.527 kb on - strand at 812.528 kb on + strand at 812.632 kb on - strand, within MMP_RS04260 at 812.699 kb on + strand, within MMP_RS04260 at 812.913 kb on - strand, within MMP_RS04260 at 812.913 kb on - strand, within MMP_RS04260 at 813.010 kb on - strand, within MMP_RS04260 at 813.133 kb on - strand, within MMP_RS04260 at 813.569 kb on - strand, within MMP_RS04265 at 813.570 kb on + strand, within MMP_RS04265 at 813.696 kb on + strand, within MMP_RS04265 at 813.764 kb on + strand at 813.768 kb on - strand at 813.769 kb on + strand at 813.813 kb on - strand at 813.943 kb on - strand, within MMP_RS04270 at 813.947 kb on - strand, within MMP_RS04270 at 814.144 kb on + strand, within MMP_RS04270 at 814.225 kb on - strand, within MMP_RS04270 at 814.238 kb on - strand, within MMP_RS04270 at 814.252 kb on + strand, within MMP_RS04270 at 814.280 kb on + strand, within MMP_RS04270 at 814.568 kb on - strand, within MMP_RS04270 at 814.568 kb on - strand, within MMP_RS04270 at 814.618 kb on - strand, within MMP_RS04270 at 814.641 kb on - strand, within MMP_RS04270 at 814.659 kb on - strand, within MMP_RS04270
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 812,374 - MMP_RS04255 0.87 -0.5 812,457 - +0.3 812,457 - -0.3 812,458 + -0.4 812,466 - +0.3 812,468 - +0.0 812,468 - -0.1 812,487 - -0.1 812,488 + +0.7 812,506 - -0.0 812,507 + +0.4 812,527 - -0.1 812,528 + -0.1 812,632 - MMP_RS04260 0.17 -0.0 812,699 + MMP_RS04260 0.26 -0.1 812,913 - MMP_RS04260 0.55 +0.5 812,913 - MMP_RS04260 0.55 -0.2 813,010 - MMP_RS04260 0.69 -0.0 813,133 - MMP_RS04260 0.86 +0.3 813,569 - MMP_RS04265 0.64 -0.3 813,570 + MMP_RS04265 0.64 +0.2 813,696 + MMP_RS04265 0.89 +0.6 813,764 + +0.1 813,768 - -0.0 813,769 + -0.1 813,813 - -0.0 813,943 - MMP_RS04270 0.15 +0.2 813,947 - MMP_RS04270 0.15 +0.0 814,144 + MMP_RS04270 0.31 +0.1 814,225 - MMP_RS04270 0.38 +0.5 814,238 - MMP_RS04270 0.39 -0.1 814,252 + MMP_RS04270 0.40 +0.3 814,280 + MMP_RS04270 0.42 -0.4 814,568 - MMP_RS04270 0.65 -1.0 814,568 - MMP_RS04270 0.65 +0.4 814,618 - MMP_RS04270 0.69 +0.5 814,641 - MMP_RS04270 0.71 -0.3 814,659 - MMP_RS04270 0.73 -0.5
Or see this region's nucleotide sequence