Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04145

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04135 and MMP_RS04140 are separated by 168 nucleotidesMMP_RS04140 and MMP_RS04145 are separated by 123 nucleotidesMMP_RS04145 and MMP_RS04150 are separated by 124 nucleotides MMP_RS04135: MMP_RS04135 - DUF3737 family protein, at 785,705 to 786,652 _RS04135 MMP_RS04140: MMP_RS04140 - phospholipid methyltransferase, at 786,821 to 787,339 _RS04140 MMP_RS04145: MMP_RS04145 - hypothetical protein, at 787,463 to 787,987 _RS04145 MMP_RS04150: MMP_RS04150 - MFS transporter, at 788,112 to 789,326 _RS04150 Position (kb) 787 788Strain fitness (log2 ratio) -2 -1 0 1at 786.532 kb on - strand, within MMP_RS04135at 786.533 kb on + strand, within MMP_RS04135at 786.701 kb on - strandat 786.730 kb on - strandat 786.747 kb on - strandat 786.773 kb on - strandat 786.774 kb on + strandat 786.790 kb on - strandat 786.791 kb on + strandat 786.852 kb on - strandat 786.856 kb on - strandat 786.860 kb on + strandat 786.873 kb on - strand, within MMP_RS04140at 786.878 kb on + strand, within MMP_RS04140at 786.898 kb on - strand, within MMP_RS04140at 786.970 kb on - strand, within MMP_RS04140at 786.970 kb on - strand, within MMP_RS04140at 786.977 kb on + strand, within MMP_RS04140at 786.985 kb on + strand, within MMP_RS04140at 786.985 kb on + strand, within MMP_RS04140at 786.986 kb on - strand, within MMP_RS04140at 786.986 kb on - strand, within MMP_RS04140at 786.987 kb on + strand, within MMP_RS04140at 786.987 kb on + strand, within MMP_RS04140at 786.987 kb on + strand, within MMP_RS04140at 786.987 kb on + strand, within MMP_RS04140at 786.987 kb on + strand, within MMP_RS04140at 787.028 kb on - strand, within MMP_RS04140at 787.038 kb on - strand, within MMP_RS04140at 787.039 kb on + strand, within MMP_RS04140at 787.042 kb on + strand, within MMP_RS04140at 787.046 kb on - strand, within MMP_RS04140at 787.046 kb on - strand, within MMP_RS04140at 787.046 kb on - strand, within MMP_RS04140at 787.048 kb on - strand, within MMP_RS04140at 787.048 kb on - strand, within MMP_RS04140at 787.049 kb on + strand, within MMP_RS04140at 787.065 kb on - strand, within MMP_RS04140at 787.078 kb on - strand, within MMP_RS04140at 787.078 kb on - strand, within MMP_RS04140at 787.078 kb on - strand, within MMP_RS04140at 787.079 kb on + strand, within MMP_RS04140at 787.079 kb on + strand, within MMP_RS04140at 787.083 kb on - strand, within MMP_RS04140at 787.088 kb on - strand, within MMP_RS04140at 787.088 kb on - strand, within MMP_RS04140at 787.094 kb on + strand, within MMP_RS04140at 787.099 kb on - strand, within MMP_RS04140at 787.129 kb on + strand, within MMP_RS04140at 787.131 kb on + strand, within MMP_RS04140at 787.164 kb on + strand, within MMP_RS04140at 787.180 kb on + strand, within MMP_RS04140at 787.180 kb on + strand, within MMP_RS04140at 787.228 kb on + strand, within MMP_RS04140at 787.256 kb on + strand, within MMP_RS04140at 787.301 kb on - strandat 787.301 kb on - strandat 787.310 kb on - strandat 787.311 kb on + strandat 787.312 kb on - strandat 787.319 kb on + strandat 787.323 kb on - strandat 787.333 kb on - strandat 787.344 kb on - strandat 787.347 kb on + strandat 787.350 kb on + strandat 787.387 kb on - strandat 787.387 kb on - strandat 787.440 kb on - strandat 787.446 kb on + strandat 787.648 kb on + strand, within MMP_RS04145at 787.940 kb on + strandat 787.991 kb on - strandat 787.991 kb on - strandat 787.992 kb on + strandat 788.069 kb on - strandat 788.069 kb on - strandat 788.070 kb on + strandat 788.070 kb on + strandat 788.070 kb on + strandat 788.070 kb on + strandat 788.070 kb on + strandat 788.071 kb on - strandat 788.071 kb on - strandat 788.071 kb on - strandat 788.072 kb on + strandat 788.078 kb on - strandat 788.108 kb on - strandat 788.138 kb on + strandat 788.225 kb on + strandat 788.242 kb on - strand, within MMP_RS04150at 788.247 kb on + strand, within MMP_RS04150at 788.354 kb on - strand, within MMP_RS04150at 788.354 kb on - strand, within MMP_RS04150at 788.404 kb on - strand, within MMP_RS04150at 788.405 kb on + strand, within MMP_RS04150at 788.468 kb on - strand, within MMP_RS04150at 788.612 kb on - strand, within MMP_RS04150at 788.821 kb on - strand, within MMP_RS04150at 788.825 kb on - strand, within MMP_RS04150at 788.825 kb on - strand, within MMP_RS04150at 788.829 kb on - strand, within MMP_RS04150at 788.830 kb on + strand, within MMP_RS04150at 788.863 kb on - strand, within MMP_RS04150

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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786,532 - MMP_RS04135 0.87 +0.4
786,533 + MMP_RS04135 0.87 +0.4
786,701 - -0.2
786,730 - +0.1
786,747 - -0.1
786,773 - +0.2
786,774 + -0.6
786,790 - -0.8
786,791 + -0.1
786,852 - -0.1
786,856 - -0.6
786,860 + +0.4
786,873 - MMP_RS04140 0.10 -0.4
786,878 + MMP_RS04140 0.11 +0.2
786,898 - MMP_RS04140 0.15 +0.0
786,970 - MMP_RS04140 0.29 +0.8
786,970 - MMP_RS04140 0.29 -0.0
786,977 + MMP_RS04140 0.30 -0.4
786,985 + MMP_RS04140 0.32 +0.2
786,985 + MMP_RS04140 0.32 -0.2
786,986 - MMP_RS04140 0.32 +0.0
786,986 - MMP_RS04140 0.32 +0.1
786,987 + MMP_RS04140 0.32 +0.1
786,987 + MMP_RS04140 0.32 +0.9
786,987 + MMP_RS04140 0.32 +0.1
786,987 + MMP_RS04140 0.32 +0.7
786,987 + MMP_RS04140 0.32 -0.0
787,028 - MMP_RS04140 0.40 -0.0
787,038 - MMP_RS04140 0.42 -0.1
787,039 + MMP_RS04140 0.42 +0.8
787,042 + MMP_RS04140 0.43 -0.0
787,046 - MMP_RS04140 0.43 +0.1
787,046 - MMP_RS04140 0.43 -2.3
787,046 - MMP_RS04140 0.43 +0.2
787,048 - MMP_RS04140 0.44 -0.4
787,048 - MMP_RS04140 0.44 -0.4
787,049 + MMP_RS04140 0.44 -0.2
787,065 - MMP_RS04140 0.47 -0.1
787,078 - MMP_RS04140 0.50 -0.4
787,078 - MMP_RS04140 0.50 -0.0
787,078 - MMP_RS04140 0.50 +0.1
787,079 + MMP_RS04140 0.50 -0.3
787,079 + MMP_RS04140 0.50 -0.1
787,083 - MMP_RS04140 0.50 +1.0
787,088 - MMP_RS04140 0.51 +0.1
787,088 - MMP_RS04140 0.51 +0.3
787,094 + MMP_RS04140 0.53 +0.5
787,099 - MMP_RS04140 0.54 -0.0
787,129 + MMP_RS04140 0.59 +0.4
787,131 + MMP_RS04140 0.60 +0.7
787,164 + MMP_RS04140 0.66 -0.1
787,180 + MMP_RS04140 0.69 +0.2
787,180 + MMP_RS04140 0.69 -0.2
787,228 + MMP_RS04140 0.78 +0.1
787,256 + MMP_RS04140 0.84 +0.8
787,301 - -0.6
787,301 - -0.0
787,310 - -0.0
787,311 + +0.8
787,312 - +1.0
787,319 + -0.2
787,323 - +0.1
787,333 - +0.6
787,344 - -0.1
787,347 + -0.1
787,350 + +0.4
787,387 - +0.1
787,387 - -0.3
787,440 - +0.5
787,446 + +0.1
787,648 + MMP_RS04145 0.35 +0.2
787,940 + -0.2
787,991 - +0.3
787,991 - +0.4
787,992 + -0.2
788,069 - +0.3
788,069 - -0.1
788,070 + -0.3
788,070 + +0.0
788,070 + -0.1
788,070 + -0.1
788,070 + +0.2
788,071 - -0.0
788,071 - +0.2
788,071 - -0.2
788,072 + -0.0
788,078 - -0.8
788,108 - -0.3
788,138 + -0.2
788,225 + -0.4
788,242 - MMP_RS04150 0.11 -0.8
788,247 + MMP_RS04150 0.11 -0.7
788,354 - MMP_RS04150 0.20 -0.2
788,354 - MMP_RS04150 0.20 +0.0
788,404 - MMP_RS04150 0.24 -0.8
788,405 + MMP_RS04150 0.24 -0.2
788,468 - MMP_RS04150 0.29 -0.3
788,612 - MMP_RS04150 0.41 +0.5
788,821 - MMP_RS04150 0.58 +0.2
788,825 - MMP_RS04150 0.59 -0.0
788,825 - MMP_RS04150 0.59 +0.3
788,829 - MMP_RS04150 0.59 +0.2
788,830 + MMP_RS04150 0.59 -0.2
788,863 - MMP_RS04150 0.62 +1.1

Or see this region's nucleotide sequence