Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS09005 and MMP_RS04100 are separated by 70 nucleotides MMP_RS04100 and MMP_RS04105 are separated by 49 nucleotides MMP_RS04105 and MMP_RS04110 are separated by 243 nucleotides
MMP_RS09005: MMP_RS09005 - hypothetical protein, at 777,583 to 777,738
_RS09005
MMP_RS04100: MMP_RS04100 - hypothetical protein, at 777,809 to 777,994
_RS04100
MMP_RS04105: MMP_RS04105 - MarR family transcriptional regulator, at 778,044 to 778,538
_RS04105
MMP_RS04110: MMP_RS04110 - methyl-accepting chemotaxis protein, at 778,782 to 780,980
_RS04110
Position (kb) 778
779 Strain fitness (log2 ratio) -1
0
1
2 at 777.044 kb on + strand at 777.148 kb on + strand at 777.150 kb on - strand at 777.242 kb on - strand at 777.352 kb on - strand at 777.592 kb on - strand at 777.791 kb on - strand at 777.875 kb on - strand, within MMP_RS04100 at 777.876 kb on + strand, within MMP_RS04100 at 777.964 kb on + strand, within MMP_RS04100 at 777.986 kb on + strand at 778.032 kb on + strand at 778.070 kb on - strand at 778.104 kb on - strand, within MMP_RS04105 at 778.201 kb on - strand, within MMP_RS04105 at 778.207 kb on - strand, within MMP_RS04105 at 778.208 kb on + strand, within MMP_RS04105 at 778.232 kb on - strand, within MMP_RS04105 at 778.263 kb on - strand, within MMP_RS04105 at 778.331 kb on - strand, within MMP_RS04105 at 778.352 kb on - strand, within MMP_RS04105 at 778.353 kb on + strand, within MMP_RS04105 at 778.417 kb on - strand, within MMP_RS04105 at 778.418 kb on + strand, within MMP_RS04105 at 778.437 kb on + strand, within MMP_RS04105 at 778.495 kb on - strand at 778.499 kb on - strand at 778.499 kb on - strand at 778.499 kb on - strand at 778.500 kb on + strand at 778.500 kb on + strand at 778.500 kb on + strand at 778.538 kb on - strand at 778.542 kb on - strand at 778.542 kb on - strand at 778.543 kb on + strand at 778.556 kb on - strand at 778.595 kb on - strand at 778.595 kb on - strand at 778.632 kb on - strand at 778.635 kb on - strand at 778.636 kb on + strand at 778.641 kb on - strand at 778.641 kb on - strand at 778.644 kb on - strand at 778.669 kb on - strand at 778.690 kb on - strand at 778.855 kb on - strand at 778.935 kb on + strand at 779.018 kb on - strand, within MMP_RS04110 at 779.058 kb on + strand, within MMP_RS04110 at 779.198 kb on - strand, within MMP_RS04110 at 779.341 kb on - strand, within MMP_RS04110 at 779.374 kb on - strand, within MMP_RS04110 at 779.502 kb on - strand, within MMP_RS04110 at 779.502 kb on - strand, within MMP_RS04110 at 779.502 kb on - strand, within MMP_RS04110 at 779.506 kb on - strand, within MMP_RS04110 at 779.507 kb on + strand, within MMP_RS04110 at 779.507 kb on + strand, within MMP_RS04110 at 779.526 kb on - strand, within MMP_RS04110 at 779.526 kb on - strand, within MMP_RS04110 at 779.526 kb on - strand, within MMP_RS04110 at 779.527 kb on + strand, within MMP_RS04110
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 777,044 + +0.3 777,148 + -0.0 777,150 - +0.4 777,242 - -0.1 777,352 - +0.1 777,592 - -0.3 777,791 - -0.1 777,875 - MMP_RS04100 0.35 -0.1 777,876 + MMP_RS04100 0.36 +0.0 777,964 + MMP_RS04100 0.83 -0.5 777,986 + -0.1 778,032 + +0.1 778,070 - -0.0 778,104 - MMP_RS04105 0.12 +0.4 778,201 - MMP_RS04105 0.32 -0.1 778,207 - MMP_RS04105 0.33 +0.1 778,208 + MMP_RS04105 0.33 +0.1 778,232 - MMP_RS04105 0.38 -0.1 778,263 - MMP_RS04105 0.44 -0.4 778,331 - MMP_RS04105 0.58 +0.1 778,352 - MMP_RS04105 0.62 +0.5 778,353 + MMP_RS04105 0.62 -0.2 778,417 - MMP_RS04105 0.75 +0.1 778,418 + MMP_RS04105 0.76 +0.8 778,437 + MMP_RS04105 0.79 +2.3 778,495 - -0.1 778,499 - -0.2 778,499 - +0.3 778,499 - -0.5 778,500 + +0.1 778,500 + -0.2 778,500 + -0.3 778,538 - +0.2 778,542 - -0.1 778,542 - -0.3 778,543 + -0.0 778,556 - -0.7 778,595 - +0.2 778,595 - -0.1 778,632 - -0.3 778,635 - +0.5 778,636 + -0.2 778,641 - +0.3 778,641 - -0.3 778,644 - +0.4 778,669 - -0.2 778,690 - -0.1 778,855 - +0.0 778,935 + +0.2 779,018 - MMP_RS04110 0.11 -0.1 779,058 + MMP_RS04110 0.13 -0.2 779,198 - MMP_RS04110 0.19 +0.3 779,341 - MMP_RS04110 0.25 +0.3 779,374 - MMP_RS04110 0.27 +0.1 779,502 - MMP_RS04110 0.33 -0.3 779,502 - MMP_RS04110 0.33 -1.6 779,502 - MMP_RS04110 0.33 +0.1 779,506 - MMP_RS04110 0.33 -0.4 779,507 + MMP_RS04110 0.33 -0.1 779,507 + MMP_RS04110 0.33 +0.3 779,526 - MMP_RS04110 0.34 -0.3 779,526 - MMP_RS04110 0.34 +0.4 779,526 - MMP_RS04110 0.34 +0.4 779,527 + MMP_RS04110 0.34 +0.0
Or see this region's nucleotide sequence