Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04045 and MMP_RS04050 are separated by 100 nucleotides MMP_RS04050 and MMP_RS04055 are separated by 15 nucleotides MMP_RS04055 and MMP_RS04060 are separated by 26 nucleotides MMP_RS04060 and MMP_RS04065 are separated by 29 nucleotides
MMP_RS04045: MMP_RS04045 - hypothetical protein, at 766,733 to 767,473
_RS04045
MMP_RS04050: MMP_RS04050 - hypothetical protein, at 767,574 to 767,810
_RS04050
MMP_RS04055: MMP_RS04055 - hypothetical protein, at 767,826 to 768,143
_RS04055
MMP_RS04060: MMP_RS04060 - hypothetical protein, at 768,170 to 768,685
_RS04060
MMP_RS04065: MMP_RS04065 - hypothetical protein, at 768,715 to 770,745
_RS04065
Position (kb) 767
768
769 Strain fitness (log2 ratio) -1
0
1 at 766.897 kb on - strand, within MMP_RS04045 at 766.985 kb on - strand, within MMP_RS04045 at 767.046 kb on + strand, within MMP_RS04045 at 767.053 kb on - strand, within MMP_RS04045 at 767.053 kb on - strand, within MMP_RS04045 at 767.054 kb on + strand, within MMP_RS04045 at 767.145 kb on - strand, within MMP_RS04045 at 767.182 kb on - strand, within MMP_RS04045 at 767.186 kb on - strand, within MMP_RS04045 at 767.199 kb on + strand, within MMP_RS04045 at 767.252 kb on - strand, within MMP_RS04045 at 767.274 kb on + strand, within MMP_RS04045 at 767.303 kb on - strand, within MMP_RS04045 at 767.397 kb on - strand, within MMP_RS04045 at 767.397 kb on - strand, within MMP_RS04045 at 767.398 kb on + strand, within MMP_RS04045 at 767.576 kb on + strand at 767.581 kb on + strand at 767.621 kb on - strand, within MMP_RS04050 at 767.677 kb on - strand, within MMP_RS04050 at 767.712 kb on + strand, within MMP_RS04050 at 767.742 kb on - strand, within MMP_RS04050 at 767.787 kb on - strand at 767.924 kb on + strand, within MMP_RS04055 at 768.292 kb on + strand, within MMP_RS04060 at 768.317 kb on - strand, within MMP_RS04060 at 768.425 kb on - strand, within MMP_RS04060 at 768.426 kb on + strand, within MMP_RS04060 at 768.491 kb on - strand, within MMP_RS04060 at 768.575 kb on - strand, within MMP_RS04060 at 768.576 kb on + strand, within MMP_RS04060 at 768.668 kb on + strand at 768.775 kb on - strand at 768.951 kb on + strand, within MMP_RS04065 at 768.992 kb on - strand, within MMP_RS04065 at 768.993 kb on + strand, within MMP_RS04065 at 769.010 kb on - strand, within MMP_RS04065 at 769.064 kb on - strand, within MMP_RS04065 at 769.103 kb on + strand, within MMP_RS04065
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 766,897 - MMP_RS04045 0.22 +1.0 766,985 - MMP_RS04045 0.34 -0.1 767,046 + MMP_RS04045 0.42 -0.1 767,053 - MMP_RS04045 0.43 +0.1 767,053 - MMP_RS04045 0.43 +0.2 767,054 + MMP_RS04045 0.43 -0.3 767,145 - MMP_RS04045 0.56 -0.6 767,182 - MMP_RS04045 0.61 -0.2 767,186 - MMP_RS04045 0.61 +0.4 767,199 + MMP_RS04045 0.63 -0.6 767,252 - MMP_RS04045 0.70 -0.2 767,274 + MMP_RS04045 0.73 +0.2 767,303 - MMP_RS04045 0.77 +0.1 767,397 - MMP_RS04045 0.90 +0.2 767,397 - MMP_RS04045 0.90 +0.0 767,398 + MMP_RS04045 0.90 -0.1 767,576 + +0.2 767,581 + -0.1 767,621 - MMP_RS04050 0.20 -0.2 767,677 - MMP_RS04050 0.43 +0.3 767,712 + MMP_RS04050 0.58 +0.0 767,742 - MMP_RS04050 0.71 -0.1 767,787 - -0.0 767,924 + MMP_RS04055 0.31 +0.2 768,292 + MMP_RS04060 0.24 -0.1 768,317 - MMP_RS04060 0.28 -0.2 768,425 - MMP_RS04060 0.49 -0.2 768,426 + MMP_RS04060 0.50 -0.8 768,491 - MMP_RS04060 0.62 +0.4 768,575 - MMP_RS04060 0.78 +0.6 768,576 + MMP_RS04060 0.79 -0.1 768,668 + -0.1 768,775 - +0.2 768,951 + MMP_RS04065 0.12 +0.2 768,992 - MMP_RS04065 0.14 -0.4 768,993 + MMP_RS04065 0.14 -0.1 769,010 - MMP_RS04065 0.15 -0.4 769,064 - MMP_RS04065 0.17 +0.2 769,103 + MMP_RS04065 0.19 +0.2
Or see this region's nucleotide sequence