Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03955 and MMP_RS03960 are separated by 196 nucleotides MMP_RS03960 and MMP_RS03965 are separated by 168 nucleotides MMP_RS03965 and MMP_RS08885 are separated by 114 nucleotides
MMP_RS03955: MMP_RS03955 - DUF3578 domain-containing protein, at 750,869 to 752,053
_RS03955
MMP_RS03960: MMP_RS03960 - hypothetical protein, at 752,250 to 752,480
_RS03960
MMP_RS03965: MMP_RS03965 - hypothetical protein, at 752,649 to 753,023
_RS03965
MMP_RS08885: MMP_RS08885 - tetratricopeptide repeat protein, at 753,138 to 753,662
_RS08885
Position (kb) 752
753 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 751.253 kb on + strand, within MMP_RS03955 at 751.253 kb on + strand, within MMP_RS03955 at 751.427 kb on - strand, within MMP_RS03955 at 751.427 kb on - strand, within MMP_RS03955 at 751.427 kb on - strand, within MMP_RS03955 at 751.670 kb on + strand, within MMP_RS03955 at 751.761 kb on - strand, within MMP_RS03955 at 751.799 kb on + strand, within MMP_RS03955 at 751.801 kb on + strand, within MMP_RS03955 at 751.801 kb on + strand, within MMP_RS03955 at 751.801 kb on + strand, within MMP_RS03955 at 751.801 kb on + strand, within MMP_RS03955 at 751.842 kb on + strand, within MMP_RS03955 at 751.842 kb on + strand, within MMP_RS03955 at 751.953 kb on + strand at 752.006 kb on + strand at 752.006 kb on + strand at 752.007 kb on - strand at 752.016 kb on + strand at 752.039 kb on - strand at 752.039 kb on - strand at 752.039 kb on - strand at 752.071 kb on + strand at 752.090 kb on - strand at 752.098 kb on - strand at 752.099 kb on + strand at 752.101 kb on - strand at 752.101 kb on - strand at 752.102 kb on + strand at 752.169 kb on + strand at 752.171 kb on - strand at 752.172 kb on + strand at 752.178 kb on + strand at 752.236 kb on - strand at 752.376 kb on - strand, within MMP_RS03960 at 752.526 kb on + strand at 752.528 kb on - strand at 752.531 kb on - strand at 752.534 kb on - strand at 752.535 kb on + strand at 752.776 kb on - strand, within MMP_RS03965 at 752.987 kb on - strand at 752.987 kb on - strand at 752.998 kb on + strand at 753.012 kb on - strand at 753.176 kb on - strand at 753.177 kb on + strand at 753.250 kb on + strand, within MMP_RS08885 at 753.269 kb on - strand, within MMP_RS08885 at 753.275 kb on - strand, within MMP_RS08885 at 753.275 kb on - strand, within MMP_RS08885 at 753.283 kb on + strand, within MMP_RS08885 at 753.285 kb on - strand, within MMP_RS08885 at 753.349 kb on + strand, within MMP_RS08885 at 753.349 kb on + strand, within MMP_RS08885 at 753.434 kb on - strand, within MMP_RS08885 at 753.447 kb on - strand, within MMP_RS08885 at 753.450 kb on - strand, within MMP_RS08885 at 753.454 kb on - strand, within MMP_RS08885 at 753.455 kb on + strand, within MMP_RS08885 at 753.478 kb on - strand, within MMP_RS08885
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 751,253 + MMP_RS03955 0.32 +0.6 751,253 + MMP_RS03955 0.32 +0.1 751,427 - MMP_RS03955 0.47 -0.1 751,427 - MMP_RS03955 0.47 +0.4 751,427 - MMP_RS03955 0.47 -0.8 751,670 + MMP_RS03955 0.68 +0.0 751,761 - MMP_RS03955 0.75 -0.0 751,799 + MMP_RS03955 0.78 -0.4 751,801 + MMP_RS03955 0.79 +0.1 751,801 + MMP_RS03955 0.79 +0.1 751,801 + MMP_RS03955 0.79 -0.0 751,801 + MMP_RS03955 0.79 +0.4 751,842 + MMP_RS03955 0.82 +0.2 751,842 + MMP_RS03955 0.82 -0.6 751,953 + -0.2 752,006 + -1.7 752,006 + +1.0 752,007 - +0.0 752,016 + +0.2 752,039 - -0.0 752,039 - +0.3 752,039 - -0.1 752,071 + +0.2 752,090 - -0.0 752,098 - +0.4 752,099 + -0.3 752,101 - -0.1 752,101 - +0.1 752,102 + -0.2 752,169 + -0.1 752,171 - +0.4 752,172 + +0.3 752,178 + -0.1 752,236 - +0.5 752,376 - MMP_RS03960 0.55 -0.7 752,526 + -1.8 752,528 - -3.0 752,531 - -1.0 752,534 - -0.9 752,535 + -1.1 752,776 - MMP_RS03965 0.34 -0.1 752,987 - -0.1 752,987 - +0.1 752,998 + +0.0 753,012 - -0.2 753,176 - -0.3 753,177 + -0.2 753,250 + MMP_RS08885 0.21 +0.1 753,269 - MMP_RS08885 0.25 -0.2 753,275 - MMP_RS08885 0.26 +0.1 753,275 - MMP_RS08885 0.26 +0.5 753,283 + MMP_RS08885 0.28 +0.2 753,285 - MMP_RS08885 0.28 -0.7 753,349 + MMP_RS08885 0.40 -0.5 753,349 + MMP_RS08885 0.40 -0.3 753,434 - MMP_RS08885 0.56 -0.3 753,447 - MMP_RS08885 0.59 -1.9 753,450 - MMP_RS08885 0.59 +0.1 753,454 - MMP_RS08885 0.60 +0.3 753,455 + MMP_RS08885 0.60 -0.1 753,478 - MMP_RS08885 0.65 -0.1
Or see this region's nucleotide sequence